Molecular phylogeny of glacial relict species: a case of freshwater Valvatidae molluscs (Mollusca: Gastropoda) in North and East Asia
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The study of glacial relict species has been focused on understanding how the biogeographic patterns of species have developed. A number of studies using phylogenetic and population genetics approaches have been conducted for terrestrial glacial relict species, and the mechanisms of their formation have been elucidated. On the other hand, less focus has been placed on glacial relict species inhabiting freshwater systems. In particular, stable lakes can serve as refugia during a glacial period, but research studies on freshwater relict species inhabiting lakes have not been well conducted. In order to clarify the mechanism of the glacial relict species in freshwater, we conducted a molecular phylogeny analysis, divergence time estimation, and a biogeographic reconstruction on freshwater Valvatidae molluscs, which have been considered as a glacial relict in the Japanese Archipelago. Our study shows that the valvatid fauna in the Japanese Archipelago was produced by multiple dispersal events from the Asian continent and by vicariance events during the period of the Pliocene–Quaternary glaciation. It includes multiple relict species that survived interglacial periods in different lakes. These findings suggest that the lakes can serve as refugia not only during glacial periods, but also during interglacial periods.
KeywordsJapan Lake Phylogeography Refugia
We are thankful to H. Fukuda for providing samples information. We also thank T. Shimada, J.U. Otani, Y. Murai, K. Kawabe, T. Haga, Omachi City Cultural Property Center, and Katata Fishermen’s Cooperative for collecting materials. Finally, we thank two anonymous referees for providing us with helpful comments on this manuscript. This study was funded in part by Japan Society for the Promotion of Science Research Fellow Grant Number 16J04692.
- Baba, Y., Y. Fujimaki, S. Klaus, O. Butorina, S. Drovetskii & H. Koike, 2002. Molecular population phylogeny of the hazel grouse Bonasa bonasia in East Asia inferred from mitochondrial control-region sequences. Wildlife Biology 8: 251–259.Google Scholar
- Bolotov, I. N., O. V. Aksenova, Y. V. Bespalaya, M. Y. Gofarov, A. V. Kondakov, I. S. Paltser, A. Stefansson, O. V. Travina & M. V. Vinarski, 2017. Origin of a divergent mtDNA lineage of a freshwater snail species, Radix balthica, in Iceland: cryptic glacial refugia or a postglacial founder event? Hydrobiologia 787: 73–98.CrossRefGoogle Scholar
- Fujita, T. & T. Habe, 1991. Cincinna kizakikoensis n. sp. of the Family Valvatidae from Lakes Kizaki and Nakatsuna, Nagano Prefecture, Japan. Venus 50: 23–26.Google Scholar
- Glöer, P., 2002. Süßwassergastropoden Nord- und Mitteleuropas. Bestimmungsschluüssel, Lebensweise, Verbreitung. ConchBooks, Hackenheim.Google Scholar
- Habe, T., 1990. The list of Japanese freshwater mollusks:1. Hitachiobi 54: 3–6.Google Scholar
- Habe, T. & A. Kawakami, 1982. Glacial relic species, Cincinna piscinalis japonica (Martens). Chiribotan 13: 64–65.Google Scholar
- Habel, J. C., T. Assmann, T. Schmitt & J. C. Avise, 2010a. Relict species: from past to future. In Habel, J. C. & T. Assmann (eds), Relict Species Phylogeography and Conservation Biology. Springer, Berlin: 1–5.Google Scholar
- Habel, J. C., C. Drees, T. Schmitt & T. Assmann, 2010b. Review refugial areas and postglacial colonizations in the Western Palearctic. In Habel, J. C. & T. Assmann (eds), Relict Species Phylogeography and Conservation Biology. Springer, Berlin: 189–197.Google Scholar
- Habel, J. C., T. Schmitt & T. Assmann, 2010c. Relict species research: some concluding remarks. In Habel, J. C. & T. Assmann (eds), Relict Species Phylogeography and Conservation Biology. Springer, Berlin: 441–442.Google Scholar
- Hultén, E. & M. Fries, 1986. Atlas of North European Vascular Plants North of the Tropic of Cancer 1–3. Koeltz Scientific Books, Königstein.Google Scholar
- Ikeda, H., K. Senni, N. Fujii & H. Setoguchi, 2008. Survival and genetic divergence of an arctic-alpine plant, Diapensia lapponica subsp. obovata (Fr. Schm.) Hultén (Diapensiaceae), in the high mountains of central Japan during climatic oscillations. Plant Systematics and Evolution 272: 197–210.CrossRefGoogle Scholar
- Ito, T., A. Ohtaka, R. Ueno, Y. Kuwahara, H. Ubukata, S. Hori, T. Itoh, S. Hiruta, K. Tomikawa, N. Matsumoto, S. Kitaoka, S. Togashi, I. Wakana & A. Ohkawa, 2005. Aquatic macroinvertebrate fauna in Lake Takkobu, Kushiro Marsh, northern Japan. Japanese Journal of Limnology 66: 117–128.CrossRefGoogle Scholar
- Jobb, G., 2008. TREEFINDER version of October 2008 [available on internet at http://www.treefinder.de].
- Kawabe, K., T. Sonohara, T. Yoshida & I. Aihara, 2006. Cincinna japonica (Gastropoda: Valvatidae) collected from a water reservoir on the Sagami River, Kanagawa Prefecture, Japan. Chiribotan 36: 116–118.Google Scholar
- Kihira, H., O. Masuda & R. Uchiyama, 2009. Freshwater mollusks of Japan 1: freshwater mollusks of Lake Biwa and Yodogawa River. In Pisces, Revised Edition, Kanagawa.Google Scholar
- Kobayashi, M., 2008. Eruption history of the Hakone Central Cone Volcanoes, and geographical development closely related to eruptive activity in the Hakone Caldera. Research Report of Kanagawa Prefectural Museum Natural History 13: 43–60.Google Scholar
- Lomolino, M. V., B. R. Riddle & J. H. Brown, 2006. Biogeography. Sinauer, Sunderland.Google Scholar
- Masuda, O. & R. Uchiyama, 2004. Freshwater mollusks of Japan 2: freshwater mollusks of Japan. Including brackish water species. In Pisces, Tokyo.Google Scholar
- Miyadi, D., 1935. Descriptions of three new subspecies of Valvata from Nippon. Venus 5: 59–62, Pl. 3.Google Scholar
- Nakatani, T., S. Usami & T. Itoh, 2007a. Phylogeographic history of the Japanese Alpine Ringlet Erebia niphonica (Lepidoptera, Nymphalidae): fragmentation and secondary contact. Transactions of the Lepidopterological Society of Japan 58: 253–275.Google Scholar
- Nakatani, T., S. Usami & T. Itoh, 2007b. Molecular phylogenetic analysis of the Erebia aethiops groups (Lepidoptera, Nymphalidae). Transactions of the Lepidopterological Society of Japan 58: 387–404.Google Scholar
- Nakatani, T., S. Usami & T. Itoh, 2012. Historic cycles of fragmentation and expansion in the Alpine butterfly Erebia ligea (Lepidoptera, Nymphalidae) on the Japanese Archipelago, inferred from mitochondrial DNA. Lepidoptera Science 63: 204–216.Google Scholar
- Ohyagi, A., 2010a. Valvata hokkaidoensis. In Aomori Prefecture Red Data Book Revision and Review Board and Nature Conservation Division in Aomori Prefecture (eds), The Rare Wildlife in Aomori Prefecture – Aomori Prefecture Red Data Book (2010 Revised Edition). Aomori Prefecture, Aomori: 311.Google Scholar
- Ohyagi, A. 2010b. Cincinna japonica. In Aomori Prefecture Red Data Book Revision and Review Board and Nature Conservation Division in Aomori Prefecture (eds), The Rare Wildlife in Aomori Prefecture – Aomori Prefecture Red Data Book (2010 Revised Edition). Aomori Prefecture, Aomori: 311.Google Scholar
- Palumbi, S. R., A. Martin, S. Romano, W. O. Mcmillan, L. Stice & G. Grabowski, 1991. The Simple Fool’s Guide to PCR. University of Hawaii Press, Honolulu.Google Scholar
- Preston, H. B. 1916. Description of new freshwater shells from Japan. The Annals and Magazine of Natural History; Zoology, Botany, and Geology Being a Continuation of the Annals Combined with Loudon and Charlesworth’s Magazine of Natural History 8th Series 17: 159–163, Pl. 9.Google Scholar
- Prozorova, L. A., T. Ya. Sitnikova, M. O. Zasypkina, P. O. Matafonov & A. Dulmaa, 2009. Freshwater Gastropoda in the Basin of Lake Baikal and adjacent territories. In Timoshkin, O. A. (ed.), Index of Animal Species Inhabiting Lake Baikal and Its Catchment Area. Basins and Channels in the South of East Siberia and North Mongolia, Book 1, Part 1, Vol. 2. Nauka, Novosibirsk: 170–188.Google Scholar
- Quante, M., 2010. The changing climate: past, present, future. In Habel, J. C. & T. Assmann (eds), Relict Species Phylogeography and Conservation Biology. Springer, Berlin: 9–56.Google Scholar
- Rambaut, A., A. J. Drummond & M. Suchard, 2013. Tracer v1.6 [available on internet at http://tree.bio.ed.ac.uk/software/tracer/].
- Ray, N. & J. M. Adams, 2001. A GIS-based vegetation map of the world at the Last Glacial Maximum (25,000–15,000 BP). Internet Archaeology 11 [available on internet at http://intarch.ac.uk/journal/issue11/bristow_index.html].
- Schmitt, T., C. Muster & P. Schönswetter, 2010. Are disjunct alpine and arctic-alpine animal and plant species in the western palearctic really “Relics of a cold past”? In Habel, J.C. & T. Assmann (eds), Relict Species Phylogeography and Conservation Biology. Springer, Berlin: 239–252.Google Scholar
- Senni, K., N. Fujii, H. Takahashi, T. Sugawara & M. Wakabayashi, 2005. Intraspecific chloroplast DNA variation of the alpine plants in Japan. Acta Phytotaxonomica et Geobotanica 56: 265–275.Google Scholar
- Starobogatov, Ya. I., L. A. Prozorova, V. V. Bogatov & E. M. Sayenko, 2004. Molluscs. In Bogatov, V. V. & S. J. Tsalolikhin (eds), Key to Freshwater Invertebrates of Russia and adjacent lands, Vol. 6., Molluscus, Polychaetes, Nemerteans Nauka, St. Petersburg: 10–491.Google Scholar
- Tanabe, A. S., 2012. Phylogears version 2.2.2012.02.13 [available on internet at http://www.fifthdimension.jp/].
- Vinarski, M. & Y. Kantor, 2016. Analytical Catalogue of Fresh and Brackish Water Molluscs of Russia and Adjacent Countries. KMK Scientific Press, Moscow.Google Scholar
- von Martens, E., 1877. Übersicht über die von Hilgendorf und Dönitz in Japan gesammelten Binnenmollusken. Sitzungsberichte der Gesellschaft natur- forschender Freunde zu Berlin 1877: 97–123.Google Scholar
- Xu, S., P. D. N. Hebert, A. A. Kotov & M. E. Cristescu, 2009. The noncosmopolitanism paradigm of freshwater zooplankton: insights from the global phylogeography of the predatory cladoceran Polyphemus pediculus (Linnaeus, 1761) (Crustacea, Onychopoda). Molecular Ecology 18: 5161–5179.CrossRefPubMedGoogle Scholar