Abstract
Multiple-scale assessments of fish-habitat associations are limited despite the fact that riverine fish assemblages are influenced by factors operating over a range of spatial scales. A method for assessing fish-habitat assemblages at multiple scales is proposed and tested in a large Australian dryland river, the Barwon–Darling River. Six discrete mesohabitat types (large wood, smooth bank, irregular bank, matted bank, mid-channel and deep pool) nested within 10 km long river reaches were sampled. Individual reaches were, in turn, nested within four larger geomorphological zones, previously identified along the river. Fish assemblages varied significantly between mesohabitat types and at different spatial scales. Golden perch (Macquaria ambigua), Murray cod (Maccullochella peelii peelii) and common carp (Cyprinus carpio) were strongly associated with large wood, but golden perch and Murray cod exhibited higher habitat specificity than carp. Bony herring (Nematalosa erebi) were more common in shallow edgewater habitats. At the river-scale, regional differences in the fish assemblage occurred at scales closely corresponding to geomorphological zones and these differences were associated with changes in the relative abundance of species rather than the addition or replacement of species. The proposed hierarchical framework improves the efficiency of fish surveys in large rivers by viewing meso-scale fish-habitat associations in the context of larger-scale geomorphological processes.
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References
Aadland L. P. (1993). Stream habitat types: their fish assemblages and relationship to flow. North American Journal of Fisheries Management 13: 790–806
Aarts B. G. W. and Nienhuis P. H. (2003). Fish zonations and guilds as the basis for assessment of ecological integrity of large rivers. Hydrobiologia 500: 157–178
Abramovitz J. N. (1996). Imperiled Waters, Impoverished Future: The Decline of Freshwater Ecosystems Worldwatch Paper 28. Worldwatch Institute, Washington D.C
Allan J. D. and Flecker A. S. (1993). Biodiversity conservation in running waters. Identifying the major factors that threaten destruction of riverine species and ecosystems. Bioscience 43: 32–43
Allen G. R. (1989). Freshwater Fishes of Australia. T. F. H. Publications, Neptune City
Angermeier P. L. and Karr J. R. (1984). Relationships between woody debris and fish habitat in a small warmwater stream. Transactions of the American Fisheries Society 113: 716–726
Angermeier, P. L., 1987. Spatiotemporal variation in habitat selection by fishes in small Illinois streams. In Proceedings of the Symposium on Community and Evolutionary Ecology of North America Stream Fishes. 10th June (1985). In Matthews, W. J. & D. C. Heins, (eds), Knoxville, University of Oklahoma Press, London, 52–60
Bisson P. A., Sullivan K. and Nielsen J. L. (1982). A system of naming habitat types in small streams with examples of habitat utilisation by salmonids during low streamflow. In: Armantrout, N.B. (eds) Aquisition and Utilization of Aquatic Habitat Inventory Information, pp 62–73. American Fisheries Society, Bethesda
Bray J. R. and Curtis J. T. (1957). An ordination of the upland forest communities of Southern Wisconsin. Ecological Monographs 27: 325–349
Briggs I. C. and McDowall R. M. (1996). Family Clupeidae: Herrings. In: McDowall, R. M. (eds) Freshwater Fishes of South-eastern Australia, pp 44–47. Reed Books, Sydney
Bull L. J. and Kirkby M. J. (2002). Dryland river characteristic and concepts. In: Bull, L. J. and Kirkby, M. J. (eds) Dryland Rivers: Hydrology and Geomorphology of Semi-Arid Channels, pp 3–15. Wiley, Chichester
Bult T. P., Haedrich R. L. and Schneider D. C. (1998). New technique describing spatial scaling and habitat selection in riverine habitats. Regulated Rivers: Research & Management 14: 107–118
Cadwallader P. and Lawrence B. (1990). Fish. In: Mackay, N. a. E. D. (eds) The Murray, pp 316–335. Murray-Darling Basin Commision, Canberra
Cadwallader P. L. and Backhouse G. N. (1983). A Guide to the Freshwater Fish of Victoria. Victorian Government Printing Office, Melbourne
Chessman B. and Jones H. (2001). Intergrated Monitoring of Environmental Flows: Design Report. New South Wales Department of Land and Water Conservation, Sydney
Clarke K. R. (1993). Non-parametric multivariate analyses of changes in community structure. Australian Journal of Ecology 18: 117–143
Clarke, K. R. & R. N. Gorley, 2001. Primer v5: User Manual/Tutorial. Primer, Plymouth
Clarke K. R. and Warwick R. M. (2001). Change in Marine Communities: An Approach to Statistical Analysis and Interpretation. Plymouth Marine Laboratory, Plymouth
Crook D. A. and Robertson A. I. (1999). Relationships between riverine fish and woody debris: implications for lowland rivers. Marine and Freshwater Research 50: 941–953
Crook D. A., Robertson A. I., King A. I. and Humphries P. (2001). The influence of spatial scale and habitat arrangement on diel patterns of habitat use by two lowland river fishes. Oecologia 129: 525–533
Davies B. R., Thoms M. C., Walker K. F., O’Keefe H. J. and Gore J. A. (1994). Dryland rivers: their ecology, conservation and management. In: Calow, P. and Petts, G. E. (eds) The Rivers Handbook: Hydrological and Ecological Principles, pp 484–511. Blackwell Scientific Publications, Oxford
Essington T. E. and Kitchell J. F. (1999). New perspectives in the analysis of fish distributions: a case study on the spatial distribution of largemouth bass (Micropterus salmoides). Canadian Journal of Fisheries, Aquatic Sciences 56(Suppl. 1): 52–60
Faragher R. A. and Rodgers M. (1997). Performance of sampling-gear types in the New South Wales Rivers Survey. In: Harris, J. H. and Gehrke, P. C. (eds) Fish and Rivers in Stress: The NSW Rivers Survey, pp 251–268. NSW Fisheries Office of Conservation and CRC for Freshwater Ecology, Sydney
Fausch K. D., Torgersen C. E., Baxter C. V. and Li H. W. (2002). Landscapes to riverscapes: bridging the gap between research and conservation of stream fishes. Bioscience 52: 483–498
Frissell C. A., Liss W. J., Warren C. E. and Hurley M. D. (1986). A hirarchical framework for stream habitat classification: viewing streams in a watershed context. Environmental Management 10: 199–214
Frothingham K. M., Rhoads B. L. and Herricks E. E. (2002). A multiscale conceptual framework for integrated ecogeomorphological research to supprot stream naturalisation in the agricultural midwest. Environmental Management 29: 16–33
Gehrke P. C. (1992). Diel abundance, migration and feeding of fish larvae (Eleotridae) in a floodplain billabong. Journal of Fish Biology 40: 695–707
Gehrke P. C. and Harris J. H. (2000). Large-scale patterns in species richness and composition of temperate riverine fish communities, south eastern Australia. Marine and Freshwater Research 51: 165–182
Gehrke P. C. and Harris J. H. (2004). Fish in the Darling River System. In: Breckwoldt, R., Boden, R. and Andrew, J. (eds) The Darling River, pp 260–277. Murray-Darling Basin Commission, Canberra
Growns I. O., Pollard D. A. and Harris J. H. (1996). A comparison of electric fishing and gillnetting to examine the effects of anthropogenic disturbance on riverine fish communities. Fisheries Management, Ecology 3: 13–24
Harmon M. E., Franklin J. F., Swanson F. J., Sollins P., Gregory S. V., Lattin J. D., Anderson N. H., Cline S. P., Aumen N. G., Sedell J. R., Lienkaemper G. W. and Cummins K. W. (1986). Ecology of coarse woody debris in temperate ecosystems. Advances in Ecological Research 15: 133–302
Harris, J. H., 1994. Fish/Habitat associations in NSW rivers. In Brierley, G. J. & F. Nagel (eds), Geomorphology and River Health in NSW Rivers. Proceedings of a one day conference at Macquarie University, October 7 1994. 101–107
Harris J. H. (1995). The use of fish in ecological assessments. Australian Journal of Ecology 20: 65–80
Harris J. H. and Rowland J. (1996). Australian freshwater cods and basses. In: McDowall, R. M. (eds) Freshwater Fishes of South Eastern Australia, pp 150–163. Reed, Sydney
Harris J. H. and Gehrke P. C. (1997). Fish and Rivers in Stress: The NSW Rivers Survey. NSW Fisheries Office of Conservation and CRC for freshwater Ecology, Sydney
Hawkins C. P., Kersner J. L., Bisson P. A., Bryant M. D., Decker S. V., Gregory S. V., McCullough D. A., Overton C. K., Reeves G. H., Steedman R. J. and Young M. K. (1993). A hierarchical approach to classifying stream habitat features. Fisheries 18: 3–12
Horne J. K. and Schneider D. C. (1995). Spatial variance in ecology. Oikos 74: 18–26
Huet M. (1959). Profiles and biology of Western European streams as related to fish management. Transactions of the American Fisheries Society 88: 155–163
Inoue M., Nakano S. and Nakamura F. (1997). Juvenile masu salmon (Oncorhynchus masou) abundance and stream habitat relationships in northern Japan. Canadian Journal of Fisheries and Aquatic Sciences 54: 1331–1341
Jowett I. G. and Richardson J. (1995). Habitat preferences of common, riverine New Zealand native fishes and implications for flow management. New Zealand Journal of Marine and Freshwater Research 29: 13–23
Jungworth M., Muhar S. and Schmutz S. (2000). Fundamentals of fish ecological integrity and their relation to the extended serial discontinuity concept. Hydrobiologia 422: 85–97
Karr J. R. (1991). Biological integrity: a long neglected aspect of water resource management. Ecological Applications 1: 66–84
Kearney, R. E., K. M. Davis & K. E. Beggs, 1999. Issues affecting the sustainability of Australia’s freshwater fisheries resources and identification of research strategies. (FRDC Final report No. 97/142)
Koehn, J., 1996. Habitats and movements of freshwater fish in the Murray-Darling Basin. In Proceedings of the (1995) Riverine Environment Research Forum. Banens, R. J. & R. Lehane (eds), Attwood, Victoria. Murray-Darling Basin Commission, Canberra
Koehn, J. & S. Nicol, 1997. Habitat and movement requirements of fish. In Proceedings of the Riverine Environmental Research Forum of MDBC Natural Resource Management Strategy Funded Projects. Brisbane, Queensland. Murray-Darling Basin Commission, Canberra
Koehn J. D. and O’Connor W. G. (1990). Biological Information for Management of Native Freshwater Fish in Victoria. Department of Conservation and Environment, Melbourne
Koehn J. D. (1995). Conserving Australian native freshwater fishes: the way forward. In: Bennett, A. and Backhouse, G. (eds) People and Nature Conservation: Perspectives on Private Land Use and Endangered Species Recovery, pp. The Royal Zoological Society of New South Wales, Australia
Kruskal J. B. and Wish M. (1978). Multidimensional Scaling. Sage Publications, London
Lake, P. S. 1994. Understanding the Ecology of Australian Running Waters: An Assessment of Current Endeavours and the Future Priorities. LWRRDC Occasional Paper Series, 13/94
Lammens E. H. R. R. and Hoogenboezem W. (1991). Diets and feeding behaviour. In: Winfield, I. J. and Nelson, J. S. (eds) Cyprinid Fishes: Systematics, Biology and Exploitation, pp 353–376. Chapman and Hall, London
Lamouroux N., Capra H., Pouilly M. and Souchon Y. (1999). Fish habitat preferences in large streams of southern France. Freshwater Biology 42: 673–687
Lanka R. P., Hubert W. A. and Wesche T. A. (1987). Relations of geomorphology to stream habitat and trout standing stock in small Rocky Mountain streams. Transactions of the American Fisheries Society 116: 21–28
Legendre P. (1993). Spatial autocorrelation: trouble or new paradigm? Ecology 74: 1659–1673
Levin S. A. (1992). The problem of pattern and scale in ecology. Ecology 73: 1943–1967
Lobb M. D. and Orth D. J. (1991). Habitat use by an assemblage of fish in a large warmwater stream. Transactions of the American Fisheries Society 120: 65–78
Maddock I. (1999). The importance of physical habitat assessment for evaluating river health. Freshwater Biology 41: 373–391
Maitland, P. S., 1987. Conserving Fish in Australia. In Proceedings of the Conference on Australian Threatened Fish. Melbourne, 1985: 63–67
Maitland P. S. (1995). The conservation of freshwater fish: past and present experience. Biological Conservation 72: 259–270
Mallen-Cooper, M., 1989. Fish passage in the Murray-Darling Basin. In Proceedings of the Native Fish Management Workshop. Lawrence, B. (ed.), Murray-Darling Basin Commission: Canberra, 123–136
Mallen-Cooper, M., I. G. Stuart, F. Hides-Pearson, J. H. Harris, 1995. Fish Migration in the Murray River and Assessment of the Torrumbarry fishway. NSW Fisheries Research Institute and the Cooperative Centre for Freshwater Ecology, Sydney (Final report for Natural Resources Management Stratergy, Project N002)
Mason D. M. and Brandt S. B. (1999). Space, time and scale: new perspectives in fish ecology and management. Canadian Journal of Fisheries, Aquatic Sciences 56(Suppl. 1): 1–3
MDBC, 2003. Native Fish Strategy for the Murray-Darling Basin 2003–2013. Murray-Darling Basin Ministerial Council, Canberra
MDBC, 2004. Fish Theme Pilot Audit Technical Report – Sustainable Rivers Audit. Murray-Darling Basin Commission, Canberra
Menge B. A. and Olson A. M. (1990). Role of scale and environmental factors in regulation of community structure. Trends in Ecology Evolution 5: 52–57
Montgomery D. M. (1999). Process domains and the river continuum. Journal of the American Water Resources Association 36: 397–410
Morris S. A., Pollard D. A., Gehrke P. C. and Pogonoski J. J. (2001). Threatened and Potentiially Threatened Freshwater Fishes of Coastal New South Wales and the Murray–Darling Basin. NSW Fisheries, Sydney
Nanson G. C., Tooth S. and Knighton A. D. (2002). A global perspective on dryland rivers: perceptions, misconceptions and distinctions. In: Bull, L. J. and Kirkby, M. J. (eds) Dryland Rivers: Hydrology and Geomorphology of Semi-arid Channels, pp 17–54. Wiley, Chichester
Nykanen M. and Huusko A. (2003). Size-related changes in habitat selection by larval grayling (Thymallus thymallus L.). Ecology of Freshwater Fish 12: 127–133
Parasiewicz P. (2001). MesoHABSIM: a concept for application of instream flow models in river restoration planning. Fisheries 26: 6–13
Poizat G. and Pont D. (1996). Multi-scale approach to species-habitat relationships: juvenile fish in a large river section. Freshwater Biology 36: 611–622
Power M. E. (1987). Predator avoidance by grazing fishes in temperate and tropical streams. In: Kerfoot, W. C. and Sih, A. (eds) Predation: Direct and Indirect Impacts on Aquatic Communities, pp. University Press of New England, Hanover
Puckridge J., Sheldon F., Walker K. and Boulton A. (1992). Significance and conservation of arid zone rivers. Newsletter of the Australian Society for Fish Biology 22: 48
Puckridge J. T., Sheldon F., Walker K. F. and Boulton A. J. (1998). Flow variability and the ecology of large rivers. Marine, Freshwater Research 49: 55–72
Revenga C., Brunner J., Henninger N. and Kassem K. (2000). Pilot Analysis of Global Ecosystems: Freshwater Systems. World Resources Institute, Washington, DC
Reynolds L. F. (1983). Migration patterns of five fish species in the Murray- Darling River system. Australian Journal of Marine, Freshwater Research 34: 857–872
Schiemer F. (2000). Fish as indicators for the assessment of the ecological integrity of large rivers. Proceedings on a workshop on ecological integrity in Vienna. Hydrobiologia 422: 271–278
Schiemer F., Keckeis H. and Kamler E. (2003). The early life history stages of riverine fish: ecophysiological and environmental bottlenecks. Comparative Biochemistry, Physiology Part A 133: 439–449
Schiller C. B., Bruce A. M. and Gehrke P. C. (1997). Distribution and abundance of native fish in New South Wales rivers. In: Harris, J. H. and Gehrke, P. C. (eds) Fish and Rivers in Stress: The NSW Rivers Survey, pp 71–102. NSW Fisheries Office of Conservation and the Cooperative Research Centre for Freshwater Ecology, Sydney
Schlosser I. J. (1987). The role of predation in age- size-related habitat use by stream fishes. Ecology 66: 651–659
Sheldon F. and Walker K. F. (1998). Spatial distribution of littoral invertebrates in the lower Murray-Darling River system, Australia. Marine and Freshwater Research 49: 171–181
Thoms M. C. and Walker K. F. (1992). Morphological changes along the River Murray, South Australia. In: Carling, P. A. and Petts, G. E. (eds) Lowland Floodplain Rivers: Geomorphological Perspectives, pp 235–249. Wiley, Chichester
Thoms M. C. and Sheldon F. (2000a). Lowland Rivers: An Australian introduction. Regulated Rivers: Research, Management 16: 375–383
Thoms M. C. and Sheldon F. (2000b). Water resource development and hydrological change in a large dryland river: the Barwon–Darling River, Australia. Journal of Hydrology 228: 10–21
Thoms, M. C., 2001. Australian inland rivers. In Proceedings of the Report of the Inland Rivers Workshop. Webster R. (ed.), Alice Springs, Northern Territory. Land and Water Australia, 116
Thoms M. C., Hill S. M., Spry M. J., Chen X. Y., Mount T. J. and Sheldon F. (2004). The Geomorphology of the Barwon–Darling Basin. In: Breckwodt, R., Boden, R., and Andrew, J. (eds) The Darling, pp 68–103. Murray-Darling Basin Commission, Canberra
Thoms, M. C. in press. Channel morphology of a large dryland river: the Barwon–Darling, Australia. Earth Surface Processes and Landforms
Orth D. J. (2001). Formulation of habitat suitability models for stream fish guilds: do the standard methods work?. Transactions of the American Fisheries Society 130: 217–235
Wager, R. & P. D. Jackson, 1993. The Action Plan for Australian Freshwater Fishes. Australian Nature Conservation Agency
Walters D. M., Leigh D. S., Freeman M. C., Freeman B. J. and Pringle C. M. (2003). Geomorphology and fish assemblages in a Piedmont river basin U.S.A. Freshwater Biology 48: 1950–1970
Weins J. A. (2002). Riverine landscapes: taking landscape ecology into the water. Freshwater Biology 47: 501–515
Wiens J. A. (1989). Spatial scaling in Ecology. Functional Ecology 3: 385–397
Zalewski M. (1985). The estimate of fish density and biomass in rivers on the basis of relationships between specimen size and efficiency of electrofishing. Fisheries Research 3: 147–155
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Boys, C.A., Thoms, M.C. A Large-scale, Hierarchical Approach for Assessing Habitat Associations of Fish Assemblages in Large Dryland Rivers. Hydrobiologia 572, 11–31 (2006). https://doi.org/10.1007/s10750-005-0004-0
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DOI: https://doi.org/10.1007/s10750-005-0004-0