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The ABC1K gene family in Chinese cabbage: phylogeny, structure and function

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Abstract

The ABC1K gene family (activity of BC1 complex kinase), found in bacteria, archaea, and eukaryotes, plays a vital role in regulating cellular metabolism. Despite its significance, the evolutionary history and functional diversity of the ABC1K gene family little in Brassica crops, are not well understood. Chinese cabbage, a crop of Brassica genus extensively cultivated and consumed in East Asia, has a complex evolutionary history that includes polyploidization and whole-genome duplication. Through comprehensive analyses of gene structures, phylogenetic relationships, chromosomal locations, microsynteny, gene duplication, and gene expression, the ABC1K gene family in Chinese cabbage was characterized. We identified 25 members of the Chinese cabbage ABC1K gene family, all of which harbor the AarF domain. Notably, we further reported the occurrence of gene fusion, resulting in the formation of the BraraABC1K15-2 gene in Brassica. Additionally, we observed that the ABC1K genes displayed highly tissue-specific patterns, with significantly higher levels observed in flowers and leaves compared to other tissues. Remarkably, genes BraraABC1K4 and BraraABC1K14 were found for the first time to participate in plant photosynthesis. The findings presented here will help to understand the functions of ABC1K genes in plant development, growth, and stress response.

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Acknowledgements

We thank Professor Jian Wu from Chinese Academy of Agricultural Sciences Institute of Vegetables and Flowers (Beijing, China) for seed provided. This study was supported by the Doctoral Enhancement Program of Suzhou Polytechnic Institute of Agriculture (Grant no. BS2101)

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Authors and Affiliations

  1. Anhui Provincial Key Laboratory of the Conservation and Exploitation of Biological Resources, College of Life Sciences, Anhui Normal University, Wuhu, 241000, China

    Yuanxin Ye, Hengwu Ding, Shiyun Han, Sijia Zhang & Xianzhao Kan

  2. Suzhou Polytechnic Institute of Agriculture, Suzhou, 215000, China

    De Bi

  3. School of Food and Bioengineering, Wuhu Institute of Technology, Wuhu, 241003, China

    Wen Ge & Yuhong Liu

  4. School of Basic Medical Sciences, Wannan Medical College, Wuhu, 241002, China

    Jianke Yang

  5. The Institute of Bioinformatics, College of Life Sciences, Anhui Normal University, Wuhu, 241000, China

    Shiyun Han, Sijia Zhang & Xianzhao Kan

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  1. Yuanxin Ye
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  2. Hengwu Ding
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  3. De Bi
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  4. Wen Ge
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  7. Sijia Zhang
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  8. Yuhong Liu
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  9. Xianzhao Kan
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Contributions

Xianzhao Kan: conceptualization, project administration, supervision, and writing—review & editing. Yuanxin Ye and Hengwu Ding data curation, methodology, and writing—original draft. De Bi: funding acquisition. Wen Ge, Jianke Yang and Shiyun Han: software, investigation and validation. Sijia Zhang and Yuhong Liu: resources and formal analysis.

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Correspondence to Xianzhao Kan.

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Supplementary Information

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10722_2024_1925_MOESM1_ESM.pdf

Supplementary file1 (PDF 26520 KB) Fig. 1 The Neutrality Plot of ABC1K gene members in Chinese cabbage. Slopes that are less than 0.5 represent selective pressure is the primary driver of the coding sequence's composition, rather than mutation.

10722_2024_1925_MOESM2_ESM.pdf

Supplementary file2 (PDF 2509 KB) Fig. 2 A. The GO Enrichment ScatterPlot of cluster 5. B. The GO Enrichment ScatterPlot of cluster 10.

Supplementary file3 (XLSX 134 KB)

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Ye, Y., Ding, H., Bi, D. et al. The ABC1K gene family in Chinese cabbage: phylogeny, structure and function. Genet Resour Crop Evol (2024). https://doi.org/10.1007/s10722-024-01925-4

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