Abstract
Drought associated with global warming is a major limiting factor for crop production. This abiotic stress affects the quality and yield of rice (Oryza sativa L.) which is a model organism and also one of the major consumed products all over the world. In this study, we aimed to analyse morphologic (root length, shoot length, root wet weight, shoot wet weight, root dry weight and shoot dry weight) of rice varieties (Dhan 65, Dhan 71, Kızıltan and Karacadağ local rice) grown under drought stress during 21 days. For genetic properties, Hopi and Osr30 retrotransposon movements were investigated by using IRAP marker technique. Depending on the decreasing in the amount of water, we observed that all growth parameters showed variable results in four varieties. Moreover, IRAP-PCR indicated different polymorphism ratios among samples. These rates were 0–75% for Hopi and 0–50% for Osr30. As far as we know, this is the first detailed report on dhan 65, dhan 71, kızıltan and Karacadağ local rice varieties grown under drought stress.
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References
Araz O, Ekinci M, Yuce M, Shams M, Agar G, Yildirim E (2021) Low-temperature modified DNA methylation level, genome template stability, enzyme activity, and proline content in pepper (Capsicum annuum L.) genotypes. Scientia Hortic 294:110761
Arvas YE (2017) Genetiği Değiştirilmiş Bitkiler ve Tanısı. LAP Lambert Academic Publishing
Ault TR (2020) On the essentials of drought in a changing climate. Science 368:256–260
Aydin M, Arslan E, Agar G, Taspinar MS (2021) Overexpression of some stress tolerance genes confers enhanced pesticide tolerance in 5-aminolevulinic acid treated bean seedlings
Badirdast H, Salehi Lisar SY, Movafeghi A, Gholamalalipour Alamdari E (2021) Identification of ISSR, IRAP and iPBS markers containing information on rice characteristics under two conditions of flooding and drought stress. Cell Mol Res Iran J Biol 34:34–44
Chowhan S, Ali MKJ, Nahar K, Rahman MM, Ali MI, Islam M (2021) Yield and morpho physical characters of some modern aus rice varieties at Khagrachari. Plant Sci Today 8:155–160
Czajka K, Mehes-Smith M, Nkongolo K (2021) DNA methylation and histone modifications induced by abiotic stressors in plants. Genes Genom 44:1–19
Düzgüneş O, Kesici T, Kavuncu O, Gürbüz F (1987) Araştırma ve deneme metodları (İstatistik Metodları-II). Ankara Üniversitesi Ziraat Fakültesi Yayınları 1021:10–13
Fahad S, Adnan M, Hassan S, Saud S, Hussain S, Wu C, Wang D, Hakeem KR, Alharby HF, Turan V (2019) Rice responses and tolerance to high temperature. In: Advances in rice research for abiotic stress tolerance. Elsevier, pp 201–224
Fambrini M, Usai G, Vangelisti A, Mascagni F, Pugliesi C (2020) The plastic genome: the impact of transposable elements on gene functionality and genomic structural variations. Genesis. https://doi.org/10.1002/dvg.23399
Ferreira LM, Maia C, de Oliveira L, Arruda N, Braga RP, Tavares OCH, Regina S, de Souza M, Fernandes S, Santos LA (2020) Characteristics of the root system in two Brazilian upland rice varieties which exhibit contrasting behavior towards drought tolerance. Semina Ciências Agrárias 41(2):421–434. https://doi.org/10.5433/1679-0359.2020v41n2p421
Genua-Olmedo A, Temmerman S, Ibáñez C, Alcaraz C (2022) Evaluating adaptation options to sea level rise and benefits to agriculture: the Ebro Delta showcase. Sci Total Environ 806:150624
Ghotbi-Ravandi A, Shahbazi M, Shariati M, Mulo P (2014) Effects of mild and severe drought stress on photosynthetic efficiency in tolerant and susceptible barley (Hordeum vulgare L.) genotypes. J Agron Crop Sci 200:403–415
Gupta P, Mishra A, Lal R, Dhawan SS (2021) DNA fingerprinting and genetic relationships similarities among the accessions/species of ocimum using SCoT and ISSR markers system. Mol Biotechnol 63:446–457
Habig M, Lorrain C, Feurtey A, Komluski J, Stukenbrock EH (2021) Epigenetic modifications affect the rate of spontaneous mutations in a pathogenic fungus. Nat Commun 12:1–13
Hannan A, Hassan L, Hoque MN, Tahjib-Ul-Arif M, Robin AHK (2020) Increasing new root length reflects survival mechanism of rice (Oryza sativa L.) genotypes under PEG-induced osmotic stress. Plant Breed Biotechnol 8:46–57
Jaccard P (1908) Nouvelles recherches sur la distribution florale. Bull Soc Vaud Sci Nat 44:223–270
Kato Y, Kamoshita A, Yamagishi J (2007) Evaluating the resistance of six rice cultivars to drought: restriction of deep rooting and the use of raised beds. Plant Soil 300:149–161
Khairul Islam Md, Hossen K, Afroge M, Hosen A, Matin KAA, Masum MA, Osma Md, Joy IH, Chowdhury FY (2021) Effect of different age of seedlings on the growth and yield performance of transplanted Aus rice variety. Innov Agric 4:1–6
Khan MMH, Rafii MY, Ramlee SI, Jusoh M, Al Mamun M, Halidu J (2021) DNA fingerprinting, fixation-index (Fst), and admixture mapping of selected bambara groundnut (Vigna subterranea [L.] Verdc.) accessions using ISSR markers system. Sci Rep 11:1–23
Kidwell KK, Osborn TC (1992) Simple plant DNA isolation procedures. In: Plant genomes: methods for genetic and physical mapping. Springer, pp 1–13
Lancíková V, Žiarovská J (2020) Inter-retrotransposon amplified polymorphism markers revealed long terminal repeat retrotransposon insertion polymorphism in flax cultivated on the experimental fields around Chernobyl. J Environ Sci Health Part A 55:957–963
Naeem H, Awan FS, Dracatos PM, Sajid MW, Saleem S, Yousafi Q, Khan MS, Mehmood A, Zulfiqar B (2021) Population structure and phylogenetic relationship of Peach [Prunus persica (L.) Batsch] and Nectarine [Prunus persica var. nucipersica (L.) CK Schneid.] based on retrotransposon markers. Genet Resour Crop Evol 68:1–13
Noormohammadi Z, Torabizadeh E, Farahani F, Alishah O, Sheidai M (2020) Genetic and physiological analysis of cotton cultivars under salt stress. Genetika 52:751–764
Ramachandran M, Arulbalachandran D, Dilipan E, Ramya S (2021) Comparative analysis of abscisic acid recovery on two varieties of rice (Oryza sativa L) under drought condition. Biocatal Agric Biotechnol 33:102006
Ramakrishnan M, Satish L, Kalendar R, Narayanan M, Kandasamy S, Sharma A, Emamverdian A, Wei Q, Zhou M (2021) The dynamism of transposon methylation for plant development and stress adaptation. Int J Mol Sci 22:11387
Roy NS, Ramekar RV, Kim N-S (2021) Sequence-specific amplified polymorphism (SSAP) and sequence characterized amplified region (SCAR) markers in Zea mays. Methods Mol Biol 2250:207–218
Ruang-Areerate P, Travis AJ, Pinson SR, Tarpley L, Eizenga GC, Guerinot ML, Salt DE, Douglas A, Price AH, Norton GJ (2021) Genome-wide association mapping for grain manganese in rice (Oryza sativa L.) using a multi-experiment approach. Heredity 126:505–520
Scott MF, Ladejobi O, Amer S, Bentley AR, Biernaskie J, Boden SA, Clark M, Dell’Acqua M, Dixon LE, Filippi CV (2020) Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Heredity 125:396–416
Shata SM, Said WM, Abdel-Tawab FM, Lm K (2021) Phylogenetic relationships of some barley (Hordeum vulgare L.) accessions in egypt. Egypt J Genet Cytol 50:41–63
Shulaev V, Cortes D, Miller G, Mittler R (2008) Metabolomics for plant stress response. Physiol Plant 132:199–208
Tamzil MS, Alfiko Y, Mubarok AF, Purwantomo S, Suwanto A, Budiarti S (2021) Development of auxotrophic agrobacterium tumefaciens AGL1 by Tn5 transposon for rice (Oryza sativa L.) transformation. Biotechnol Bioprocess Eng 26:641–649
Turhan S, Taspinar MS, Yigider E, Aydin M, Agar G (2021) The role of long terminal repeat (LTR) responses to drought in selenium-treated wheat. Environ Eng Manag J 20:917–925
Violita V, Azhari S (2021) Effect of PEG-8000 imposed drought stress on rice varieties germination. J Phys Conf Ser 1940:012071
Wang W, Chen C, Wang X, Zhang L, Shen D, Wang S, Gao B, Mao J, Song C (2020) Development of molecular markers based on the L1 retrotransposon insertion polymorphisms in pigs (Sus scrofa) and their association with economic traits. Russ J Genet 56:183–191
Werner T, Nehnevajova E, Köllmer I, Novák O, Strnad M, Krämer U, Schmülling T (2010) Root-specific reduction of cytokinin causes enhanced root growth, drought tolerance, and leaf mineral enrichment in Arabidopsis and tobacco. Plant Cell 22:3905–3920
Yigider E, Taspinar MS, Aydin M, Agar G (2021) Humic acid effects on retrotransposon polymorphisms caused by zinc and iron in the maize (Zea mays L.) genome. Cereal Res Commun 49:193–198
Yuzbasioglu G, Marakli S, Gözükirmizi N (2017) Screening of Oryza sativa L. for hpt gene and evaluation of hpt positive samples using houba retransposon-based IRAP markers. Türkiye Tarımsal Araştırmalar Dergisi 4:59–64
Zarei A, Erfani-Moghadam J (2021) SCoT markers provide insight into the genetic diversity, population structure and phylogenetic relationships among three Pistacia species of Iran. Genet Resour Crop Evol 68:1625–1643
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All authors contributed to the study’s conception and design. Material preparation, data collection and analysis were performed by YEA, MSY and SM. The first draft of the manuscript was written by YEA and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.
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Arvas, Y.E., Yolci, M.S. & Marakli, S. Investigation the effect of drought stress on tolerant and resistant rice (Oryza sativa L.) varieties in terms of morphologic and genetic characters. Genet Resour Crop Evol 70, 427–436 (2023). https://doi.org/10.1007/s10722-022-01436-0
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DOI: https://doi.org/10.1007/s10722-022-01436-0