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Table 4 Overview of GBS sequence data and alignment to the reference sequence

From: Construction of a single nucleotide polymorphism marker based QTL map and validation of resistance loci to bacterial wilt caused by Ralstonia solanacearum species complex in tomato

 

Total

Average/plant

Raw data

Reads

214,317,283

1,127,986

Bases (Mb)

21,646

114

Filtereda

Reads

203,971,914

1,073,536

Mappedb

Reads

187,279,899

985,684

Tags (regions)

333,914

 

Average depth

Reads

3.03

 
  1. aThe number of reads after filtering and removing barcodes
  2. bThe number of reads and tags mapped on reference genome of S_lycopersicum_chromosomes.2.40.fa