Abstract
Compared with annual cultivated rice, perennial rice had great advantages of soil erosion control, labor saving, water and fertilizer management, etc. As the key organ for perenniality, rhizome can help grasses to achieve rapid expansion to occupy more environmental resources, and withstand the harsh environmental conditions. Oryza longistaminata, a perennial wild relative of rice with vigorous rhizomes, is an ideal donor for transferring perenniality to Asian cultivated rice (Oryza sativa). However, some hybrid F1 between O. longistaminata and cultivated rice didn’t have rhizomes. Obtaining rhizomatous hybrid progeny becomes a prerequisite for the rhizomes study. In this work, four varieties of O. sativa and three accessions of O. longistaminata were used to carry out an incomplete diallel cross experiment. It was found that most F1 hybrids had rhizomes with varying length and numbers. Data analysis showed that the general combining ability (GCA) of the female parents had significant effect on rhizome-related trait of the F1s. Nevertheless, the GCA of the male parents and special combining ability of the hybrid combination played minor effect. And we speculated that the appropriate choice for female parents is more crucial to obtain rhizomatous hybrid. As the first incomplete diallel cross between O. longistaminata and O. sativa, this work would be benefit to appropriate parent selection for genetic research and breeding of perennial rice.
Similar content being viewed by others
Data availability
All data were first published in this paper, never used for other paper.
Code availability
Microsoft office software and SPSS (Statistical Product and Service Solutions) 17.0 software was used for data processing.
References
Angeles ER, Cabunagan RC, Tiongco ER, Azzam O, Teng PS, Khush GS, Chancellor TCB (1998) Advanced breeding lines with resistance to rice tungro viruses. Int Rice Res Notes 23:17–18
Batello C, Wade L, Cox S, Pogna N, Bozzini A, Choptiany J (2014) Perennial crops for food security, proceedings of the FAO expert workshop. FAO, Rome
Chang TT, Oka HI (1976) Genetic variousness in the climatic adaptation of rice cultivars. In: Symposium on climate & rice. International Rice Research Institute, Los Banos, Philippines
Chen Z, Hu F, Xu P, Li J, Tao D (2009) QTL analysis for hybrid sterility and plant height in interspecific populations derived from a wild rice relative, Oryza longistaminata. Jpn J Breed 59:441–445. https://doi.org/10.1270/jsbbs.59.441
Chu YE, Oka HI (1970) The genetic basis of crossing barriers between Oryza perennis subsp. Barthii and its related taxa. Evolution 24:135–144. https://doi.org/10.1111/j.1558-5646.1970.tb01746.x
Cissé F, Khouma MP (2016) Improvement of wild rice Oryza longistaminata through mutation induction. J Food Sci Eng 6:82–89. https://doi.org/10.17265/2159-5828/2016.01.004
Cox TS, Glover JD, Tassel DLV, Cox CM, Dehaan LR (2006) Prospects for developing perennial grain crops. Bioscience 56:649–659. https://doi.org/10.1641/0006-3568(2006)56%5b649:pfdpgc%5d2.0.co;2
Dehaan LR, Van Tassel DL, Cox TS (2005) Perennial grain crops: a synthesis of ecology and plant breeding. Renew Agric Food Syst 20:5–14. https://doi.org/10.1079/raf200496
Ghesquiere A (1985) Evolution of Oryza longistaminata. In: Stephen J (ed) Rice genetics I. International Rice Research Institute (IRRI), Philippines, pp 15–27
Glover JD et al (2010a) Harvested perennial grasslands provide ecological benchmarks for agricultural sustainability. Agric Ecosyst Environ 137:3–12. https://doi.org/10.1016/j.agee.2009.11.001
Glover JD et al (2010b) Increased food and ecosystem security via perennial grains. Science 328:1638–1639. https://doi.org/10.1126/science.1188761
Griffing B (1956) Concept of general and specific combining ability in relation to diallel crossing system. Aust J Biol Sci 9:463–493. https://doi.org/10.1071/bi9560463
Hashemi SM, Peshin R, Feola G (2014) From the farmers’ perspective: pesticide use and pest control. In: Pimentel D, Peshin R (eds) Integrated pest management. Springer, Dordrecht, pp 409–432
He R et al (2014) A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement. BMC Plant Biol 14:46. https://doi.org/10.1186/1471-2229-14-46
Hu FY et al (2003) Convergent evolution of perenniality in rice and sorghum. Proc Natl Acad Sci U S A 100:4050–4054. https://doi.org/10.1111/j.1753-4887.1981.tb06752.x
Huang Y, Liu F (1980) Quantitative genetics basis of crops VI. Combining ability: incomplete diallel hybridization. Hereditas (Beijing) 2:43–46 (in Chinese)
Ikeda R, Khush GS, Tabien R (1990) A new resistance gene to bacterial blight derived from O. longistaminata. Rice Genet Newslett 7:121–122
Ilyas M, Naveed M, Khan TM, Khan IA (2007) Combining ability studies in some quantitative and qualitative traits of Gossypium hirsutum L. J Agric Soc Sci 3:39–42. https://doi.org/10.1007/978-3-540-87563-5_13
Jernstedt JA, Bouton JH (1985) Anatomy, morphology, and growth of tall fescue rhizomes. Crop Sci 25:539–542. https://doi.org/10.2135/cropsci1985.0011183X002500030026x
Junghyun S (2012) Perennial rice: improving rice productivity for a sustainable upland ecosystem. SABRAO J Breed Genet 44:191–201
Khan SA et al (2015) Combining ability studies for yield and fiber traits in upland cotton. J Anim Plant Sci 25:698–707
Khush G, Bacalango E, Ogawa T (1990) A new gene for resistance to bacterial blight from O. longisramìnara. Rice Genet Newsl 7:121–122
Lin YJ, Zhang Q (2005) Optimising the tissue culture conditions for high efficiency transformation of indica rice. Plant Cell Rep 23:540–547. https://doi.org/10.1007/s00299-004-0843-6
Liu L, Lafitte R, Guan D (2004) Wild Oryza species as potential sources of drought-adaptive traits. Euphytica 138:149–161. https://doi.org/10.1023/b:euph.0000046801.27042.14
Mackill DJ, Lei XM (1997) Genetic variation for traits related to temperate adaptation of rice cultivars. Crop Sci 37:1340–1346. https://doi.org/10.2135/cropsci1997.0011183X003700040051x
Maekawa M (1996) Identifying cold tolerance gene(s) in rice at the booting stage. In: Khush GS, Hettel G, Rola T (eds) Rice genetics III: (In 2 parts), vol 3. International Rice Research Institute (IRRI), Philippines, pp 428–433
Maekawa M, Inukai T, Rikiishi K, Matsuura T, Noda K (1998) Inheritance of the rhizomatous trait in hybrids of Oryza longistaminata Chev. et Roehr. and O. sativa L. SABRAO J Breed Genet 30:69–72
Masoud AA, Arafa N, El-Bouraie M (2018) Patterns and trends of the pesticide pollution of the shallow nile delta aquifer (Egypt). Water Air Soil Pollut 229:23. https://doi.org/10.1007/s11270-018-3802-5
Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plant 15:473–497. https://doi.org/10.1111/j.1399-3054.1962.tb08052.x
Nguyen NV, Ferrero A (2006) Meeting the challenges of global rice production. Paddy Water Environ 4:1–9. https://doi.org/10.1007/s10333-005-0031-5
Randall GW, Huggins DR, Russelle MP, Fuchs DJ, Nelson WW, Anderson JL (1997) Nitrate losses through subsurface tile drainage in conservation reserve program, alfalfa, and row crop systems. J Environ Qual 26:1240–1247. https://doi.org/10.2134/jeq1997.00472425002600050007x
Rasche F, Blagodatskaya E, Emmerling C, Belz R, Musyoki MK, Zimmermann J, Martin K (2017) A preview of perennial grain agriculture: knowledge gain from biotic interactions in natural and agricultural ecosystems. Ecosphere 8:24. https://doi.org/10.1002/ecs2.2048
Ray DK, Ramankutty N, Mueller ND, West PC, Foley JA (2012) Recent patterns of crop yield growth and stagnation. Nat Commun 3:1293. https://doi.org/10.1038/ncomms2296
Schmit V (1997) Interspecific hybridization between O. sativa and O.longistaminata to develop a perennial upland rice. Paper presented at the Africa/Asia Joint Research on Interspecific Hybridization between the African (O. glaberrima) and Asian (O. sativa) Rice Species. WARDA M’bé, Bouaké, Cote d’Ivoire
Soriano I, Schmit V, Brar D, Prot J, Reversat G (1999) Resistance to rice root-knot nematode Meloidogyne graminicola identified in Oryza longistaminata and O. glaberrima. Nematology 1:395–398. https://doi.org/10.1163/156854199508397
Suzuki S (1982) Cold tolerance in rice plants with special reference to the floral characters, II: relations between floral characters and the degree of cold tolerance in segregating generations. Jpn J Breed 32:9–16 in Japanese with English abstract
Tao D, Prapa S (2000) Preliminary report on transfer traits of vegetative propagation from wild rice species to Oryza sativa via distant hybridization and embryo rescue. Kasetsart J (Nat Sci) 34:1–11
Tao D et al. (2000) Rhizomatous individual was obtained from interspecific BC1F1 progenies between Oryza sativa and O. lognisatminata. In: Paper presented at the international rice genetic symposium, Los Baños, Philippines
Tao D et al (2001) Rhizomatous individual was obtained from interspecific BC2F1progenies between Oryza sativa and Oryza longistaminata. Rice Genet Newsl 18:11–13
Tilman D et al (2001) Forecasting agriculturally driven global environmental change. Science 292:281. https://doi.org/10.1126/science.1057544
Vaughan DA (1994) The wild relatives of rice: a Genetic resources handbook. International Rice Research Institute (IRRI), Manila
Wagoner P (1990) Perennial grain development: past efforts and potential for the future. Crit Rev Plant Sci 9:381–408. https://doi.org/10.1080/07352689009382298
Wang D et al (2016) Genome-wide association mapping of cold tolerance genes at the seedling stage in rice. Rice 9:10. https://doi.org/10.1186/s12284-016-0133-2
Xu P et al (2015) Identification and mapping of a novel blast resistance gene Pi57(t) in Oryza longistaminata. Euphytica 205:95–102. https://doi.org/10.1007/s10681-015-1402-7
Zhang T et al (2017) Differential transcriptome profiling of chilling stress response between shoots and rhizomes of Oryza longistaminata using RNA sequencing. PLoS ONE 12:e0188625. https://doi.org/10.1371/journal.pone.0188625
Acknowledgements
We thank Professor Ruiyang Zhou of College of Agriculture, Guangxi University for providing wild relative of rice.
Funding
This work was supported by Grants from the National Natural Science Foundation of China (31901486, 31471476), the Guangxi Natural Science Foundation of China (2018GXNSFDA050010, 2018GXNSFBA138022), Guangxi Science and Technology Development Program (AD19110145),the Scientific Research Foundation of Guangxi University (XTZ131548, XMPZ160942) and the State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources (SKLCUSA-a201916, SKLCUSA-a202004), and the Innovation Project of Guangxi Graduate Education (YCBZ2018021).
Author information
Authors and Affiliations
Contributions
ZF collected and analyzed the data and drafted the manuscript. KW, YF and LT revised the manuscript. JY designed the experiment and revised the manuscript. All authors have read and approved the content of the manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Fan, Z., Wang, K., Fan, Y. et al. Combining ability analysis on rhizomatousness via incomplete diallel crosses between perennial wild relative of rice and Asian cultivated rice. Euphytica 216, 140 (2020). https://doi.org/10.1007/s10681-020-02676-w
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s10681-020-02676-w