Skip to main content

Advertisement

Log in

Development of mutant RsF3′H allele-based marker for selection of purple and red root in radish (Raphanus sativus L. var. longipinnatus L. H. Bailey)

  • Published:
Euphytica Aims and scope Submit manuscript

Abstract

To develop a gene-based DNA selection marker for the purple and red colored root characteristics, multiplex-PCR was performed for genotyping of Raphanus sativus flavonoid 3′ hydroxylase (RsF3′H) in several cultivars and progenies. In cultivars, DNA with an approximately 450-bp in size was amplified from several radishes, such as purple-, white-, green-, and black-root radishes, whereas approximately 750-bp in size was amplified from red-root radishes. In progenies from red- and white-roots, almost F1 progenies had purple-root with DNA fragments of approximately 450- and 750-bp. In F2 progenies, two band patterns which are 450-bp, and both 450- and 750-bp fragments were amplified from purple-root individuals, whereas only 750-bp fragment were amplified from red-root individuals. In contrast, three band patterns were amplified from white-root individuals. Therefore, our data indicated that mutant RsF3′H allele-based marker could select the potential red root genotype effectively in breeding program of purple and red root radishes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+
from $39.99 /Month
  • Starting from 10 chapters or articles per month
  • Access and download chapters and articles from more than 300k books and 2,500 journals
  • Cancel anytime
View plans

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

Explore related subjects

Discover the latest articles and news from researchers in related subjects, suggested using machine learning.

References

  • Asako Y, Owaki Y, Ozeki Y, Sasaki N, Abe Y, Momose T, Shimomura K (2011) Parental line “Inuidani” of Japanese radish (Raphanus sativus L.) accumulating pelargonidin as a major anthocyanidin entirely within its underground part and preliminary genetic analysis. Breed Res 13:65–73 (in Japanese with English abstract)

    Article  Google Scholar 

  • Ban T, Kobayashi N, Hontani H, Kadowaki M, Matsumoto S (2009) Domestication and utilization of Japanese wild radish. Hortic Res 8:413–417 (in Japanese with English abstract)

    Article  Google Scholar 

  • Beale GH (1941) Gene relations and synthetic processes. J. Genet. 42:197–214

    Article  Google Scholar 

  • Cheon KS, Nakatsuka A, Gobara Y, Kobayashi N (2017) Mutant RoPI-1 allele-based marker development for selection of the hose-in-hose flower phenotype in Rhododendron obtusum cultivars. Euphytica 213:3

    Article  Google Scholar 

  • Edwards MC, Gibbs RA (1994) Multiplex PCR: advantages, development, and applications. Genome Res 3:65–75

    Article  Google Scholar 

  • Freyre R, Uzdevenes C, Liwei G, Quesenberry KH (2015) Genetics and anthocyanin analysis of flower color in Mexican Petunia. J Am Soc Hortic Sci 140:45–49

    Article  CAS  Google Scholar 

  • Holton TA, Cornish EC (1995) Genetics and biochemistry of anthocyanin biosynthesis. Plant Cell 7:1071–1083

    Article  CAS  Google Scholar 

  • Hoshi T (1975) Genetical study on the formation of anthocyanins and flavonols in turnip varieties. Genetical studies on anthocyanins in Brassicaceae II. J Plant Res 88:249–254

    CAS  Google Scholar 

  • Hoshi T, Takemura E, Hayashi K (1963) Genetic modification of hydroxylation pattern in radish anthocyanins. Studies on anthocyanins, XLII. Bot Mag Tokyo 76:431–439

    Article  CAS  Google Scholar 

  • Jing P, Zhao SJ, Ruan SY, Xie ZH, Dong Y, Yu L (2012) Anthocyanin and glucosinolate occurrences in the roots of Chinese red radish (Raphanus sativus L.), and their stability to heat and pH. Food Chem 133:1569–1576

    Article  CAS  Google Scholar 

  • Kato K, Sato K, Kanazawa T, Shono H, Kobayashi N, Tatsuzawa F (2013) Relationship between root colors and anthocyanins from radishes (Raphanus sativus L.). Hortic Res 12:229–234 (in Japanese with English abstract)

    Article  CAS  Google Scholar 

  • Kim S, Binzel M, Yoo K, Park S, Pike L (2004) Inactivation of DFR (dihydroflavonol 4-reductase) gene transcription results in blockage of anthocyanin production in yellow onions (Allium cepa). Mol Breed 14:253–263

    Article  CAS  Google Scholar 

  • Kim S-J, Uddin MR, Park S-U (2013) Glucosinolate accumulation in three important radish (Raphanus sativus) cultivars. Aust J Crop Sci 7:1843–1847

    CAS  Google Scholar 

  • Kobayashi N, Horikoshi T, Katsuyama H, Handa T, Takayanagi K (1998) A simple and efficient DNA extraction method from the plants, especially from woody plants. Plant Tissue Cult Biotechnol 4:76–80

    Google Scholar 

  • Kobayashi N, Masukawa T, Kadowaki M, Nakatsuka A, Ban T (2018) Development and spread of new variety of Japanese wild radish “Izumo Orochi Daikon” cv. ‘Susanoo’ using regional genetic resources and its characterization. Hortic Res 17:369–375 (in Japanese with English abstract)

    Article  Google Scholar 

  • Lim SH, Song JH, Kim DH, Kim JK, Lee JY, Kim YM, Ha SH (2016) Activation of anthocyanin biosynthesis by expression of the radish R2R3-MYB transcription factor gene RsMYB1. Plant Cell Rep 35:1–13

    Article  Google Scholar 

  • Masukawa T, Cheon KS, Mizuta D, Nakatsuka A, Kobayashi N (2018a) Insertion of a retrotransposon into a flavonoid 3′-hydroxylase homolog confers the red root character in the radish (Raphanus sativus L. var. longipinnatus L. H. Bailey). Hortic J 87:89–96

    Article  CAS  Google Scholar 

  • Masukawa T, Kadowaki M, Matsumoto T, Nakatsuka A, Cheon KS, Kato K, Tatsuzawa F, Kobayashi N (2018b) Enhancement of food functionality of a local pungent radish “Izumo orochi daikon” ‘Susanoo’ by introduction of a colored root character. Hortic J 87:356–363

    Article  CAS  Google Scholar 

  • Matsubara K, Chen S, Lee J, Ando T (2006) PCR-based markers for the genotype identification of flavonoid-3′, 5′-hydroxylase genes governing floral anthocyanin biosynthesis in commercial Petunias. Breed Sci 56:389–397

    Article  CAS  Google Scholar 

  • Matsufuji H, Kido H, Misawa H, Yaguchi J, Otsuki T, Chino M, Takeda M, Yamagata K (2007) Stability to light, heat, and hydrogen peroxide at different pH values and DPPH radical scavenging activity of acylated anthocyanins from red radish extract. J Agric Food Chem 55:3692–3701

    Article  CAS  Google Scholar 

  • Mizuta D, Ban T, Miyajima I, Nakatsuka A, Kobayashi N (2009) Comparison of flower color with anthocyanin composition patterns in evergreen azalea. Sci Hortic 122:594–602

    Article  CAS  Google Scholar 

  • Nakatsuka T, Haruta KS, Pitaksutheepong C, Abe Y, Kakizaki Y, Yamamoto K, Shimada N, Yamamura S, Nishihara M (2008) Identification and characterization of R2R3-MYB and bHLH transcription factors regulating anthocyanin biosynthesis in gentian flowers. Plant Cell Physiol 49:1818–1829

    Article  CAS  Google Scholar 

  • Nakatsuka T, Saito M, Sato-Ushiku Y, Yamada E, Nakasato T, Hoshi N, Fujiwara K, Hikage T, Nishihara M (2012) Development of DNA markers that discriminate between white- and blue-flowers in Japanese gentian plants. Euphytica 184:335–344

    Article  CAS  Google Scholar 

  • Park NI, Xu H, Li X, Jang IH, Park S, Ahn GH, Lim YP, Kim SJ, Park SU (2011) Anthocyanin accumulation and expression of anthocyanin biosynthetic genes in radish (Raphanus sativus). J Agric Food Chem 59:6034–6039

    Article  CAS  Google Scholar 

  • Schoen DJ, Giannasi DE, Ennos RA, Clegg MT (1984) Stem color and pleiotropy of genes determining flower color in the common morning glory. J Hered 75:113–116

    Article  Google Scholar 

  • Tasaki K, Higuchi A, Fujita K, Watanabe A, Sasaki N, Fujiwara K, Abe H, Naito Z, Takahashi R, Hikage T, Nishihara M (2017) Development of molecular markers for breeding of double flowers in Japanese gentian. Mol Breed 37:33

    Article  Google Scholar 

  • Tatebe T (1940) Studies on the inheritance of color in the Japanese and Chinese radish (II). J Jpn Soc Hortic Sci 11:300–316 (in Japanese with English abstract)

    Article  Google Scholar 

  • Wei J, Miao H, Wang Q (2011) Effect of glucose on glucosinolates, antioxidants and metabolic enzymes in Brassica sprouts. Sci Hortic 129:535–540

    Article  CAS  Google Scholar 

  • Winkel-Shirley B (2001) Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol 126:485–493

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This study was supported by Grant-in-Aid for Scientific Research (KAKENHI No. 16K07597) from Japan Society for the Promotion of Science (JSPS).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nobuo Kobayashi.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (PPTX 2029 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Masukawa, T., Cheon, KS., Mizuta, D. et al. Development of mutant RsF3′H allele-based marker for selection of purple and red root in radish (Raphanus sativus L. var. longipinnatus L. H. Bailey). Euphytica 215, 119 (2019). https://doi.org/10.1007/s10681-019-2442-1

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s10681-019-2442-1

Keywords