Euphytica

, Volume 203, Issue 2, pp 295–308 | Cite as

Allelic relationships of flowering time genes in chickpea

  • Pooran M. Gaur
  • Srinivasan Samineni
  • Shailesh Tripathi
  • Rajeev K. Varshney
  • C. L. Laxmipathi Gowda
Article

Abstract

Flowering time and crop duration are the most important traits for adaptation of chickpea (Cicer arietinum L.) to different agro-climatic conditions. Early flowering and early maturity enhance adaptation of chickpea to short season environments. This study was conducted to establish allelic relationships of the early flowering genes of ICC 16641, ICC 16644 and ICCV 96029 with three known early flowering genes, efl-1 (ICCV 2), ppd or efl-2 (ICC 5810), and efl-3 (BGD 132). In all cases, late flowering was dominant to early-flowering. The results indicated that the efl-1 gene identified from ICCV 2 was also present in ICCV 96029, which has ICCV 2 as one of the parents in its pedigree. ICC 16641 and ICC 16644 had a common early flowering gene which was not allelic to other reported early flowering genes. The new early flowering gene was designated efl-4. In most of the crosses, days to flowering was positively correlated with days to maturity, number of pods per plant, number of seeds per plant and seed yield per plant and negatively correlated or had no correlation with 100-seed weight. The double-pod trait improved grain yield per plant in the crosses where it delayed maturity. The information on allelic relationships of early flowering genes and their effects on yield and yield components will be useful in chickpea breeding for desired phenology.

Keywords

Allelic relationship Chickpea Early flowering Early maturity Inheritance 

References

  1. Anbessa Y, Warkentin T, Vandenberg A, Ball R (2006) Inheritance of time to flowering in chickpea in a short-season temperate environments. J Hered 97:55–61CrossRefPubMedGoogle Scholar
  2. Anbessa Y, Warkentin T, Bueckert R, Vandernerg A (2007) Short internode, double podding and early flowering effects on maturity and other agronomic characters in chickpea. Field Crops Res 102:43–50CrossRefGoogle Scholar
  3. Aryamanesh N, Nelson MN, Yan G, Clarke HJ, Siddique KHM (2010) Mapping a major gene for growth habit and QTLs for ascochyta blight resistance and flowering time in a population between chickpea and Cicer reticulatum. Euphytica 173:307–319CrossRefGoogle Scholar
  4. Berger JD, Turner NC, Siddique KHM, Knights EJ, Brinsmead RB, Mock I, Edmondson C, Khan TN (2004) Genotype by environment studies across Australia reveal the importance of phenology for chickpea (Cicer arietinum L.) improvement. Aust J Agric Res 55:1–14CrossRefGoogle Scholar
  5. Berger JD, Ali M, Basu PS, Chaudhary BD, Chaturvedi SK et al (2006) Genotype by environment studies demonstrate the critical role of phenology in adaptation of chickpea (Cicer arietinum L.) to high and low yielding environments of India. Field Crops Res 98:230–244CrossRefGoogle Scholar
  6. Berger JD, Milroy SP, Turner NC, Siddique KHM, Imtiaz M, Malhotra R (2011) Chickpea evolution has selected for contrasting phenological mechanisms among different habitats. Euphytica 180:1–15CrossRefGoogle Scholar
  7. Bernard RL (1971) Two genes for time of flowering and maturity in soybeans. Crop Sci 11:242–244CrossRefGoogle Scholar
  8. Bonato ER, Vello NA (1999) E6, a dominant gene conditioning early flowering and maturity in soybeans. Genet Molec Biol 22:229–232CrossRefGoogle Scholar
  9. Buzzell RI (1971) Inheritance of a soybean flowering response to fluorescent-daylength conditions. Can J Genet Cytol 13:703–707Google Scholar
  10. Buzzell RI, Voldeng HD (1980) Inheritance of insensitivity to long daylength. Soybean Genet Newsl 7:26–29Google Scholar
  11. Chao S, Kumar J, Shultz JL, Anupama K, Tefera F, Muehlbauer FJ (2002) Mapping genes for double podding and other morphological traits in chickpea. Euphytica 128:285–292CrossRefGoogle Scholar
  12. Cober ER, Voldeng HD (2001) A new soybean maturity and photoperiod-sensitivity locus linked to E1 and T. Crop Sci 41:698–701CrossRefGoogle Scholar
  13. Cobos MJ, Rubio J, Fernandez-Romero MD, Garza R, Moreno MT, Millan T, Gil J (2007) Genetic analysis of seed size, yield and days to flowering in a chickpea recombinant inbred line population derived from a Kabuli x Desi cross. Ann Appl Biol 151:33–42CrossRefGoogle Scholar
  14. Cobos MJ, Winter P, Kharrat M, Cubero JI, Gil J, Millan T, Rubio J (2009) Genetic analysis of agronomic traits in a wide cross of chickpea. Field Crop Res 111:130–136CrossRefGoogle Scholar
  15. Coyne DP, Mattson RH (1964) Inheritance of time of flowering and length of blooming period in Phaseolus vulgaris L. J Amer Soc Hort Sci 85:366–373Google Scholar
  16. Craufurd PQ, Soko HS, Jones JK, Summerfield RJ (2001) Inheritance of duration from sowing to first flowering in pigeonpea. Euphytica 119:323–333CrossRefGoogle Scholar
  17. FAOSTAT (2014) http://faostat.fao.org/faostat/. Accessed 10 Sep 2014
  18. Gaur PM, Gowda CLL, Knights EJ, Warkentin TD, Acikgoz N, Yadav SS, Kumar J (2007) Chapter 19: Breeding achievements. In: Yadav SS, Redden B, Chen W, Sharma B (eds) Chickpea Breeding and Management. CAB International, UK, pp 391–416CrossRefGoogle Scholar
  19. Gaur PM, Krishnamurthy L, Kashiwagi J (2008a) Improving drought-avoidance root traits in chickpea (Cicer arietinum L.): current status of research at ICRISAT. Plant Prod Sci 11:3–11CrossRefGoogle Scholar
  20. Gaur PM, Kumar J, Gowda CLL, Pande S, Siddique KHM, Khan TN, Warkentin TD, Chaturvedi SK, Than AM, Ketema D (2008b) Breeding chickpea for early phenology: perspectives, progress and prospects. In: Kharkwal MC (ed) Food legumes for nutritional security and sustainable agriculture, vol 2. Indian Society of genetics and Plant Breeding, New Delhi, pp 39–48Google Scholar
  21. Gaur PM, Tripathi S, Gowda CLL, Ranga Rao GV, Sharma HC, Pande S, Sharma M (2010) Chickpea seed production manual. International Crops Research Institute for the Semi-Arid Tropics, PatancheruGoogle Scholar
  22. Gaur PM, Jukanti AK, Srinivasan S, Gowda CLL (2012) Chickpea (Cicer arietinum L.). In: Bharadwaj DN (ed) Breeding of field crops. Agrobios, Jodhpur, pp 165–194Google Scholar
  23. Gaur PM, Jukanti AK, Srinivasan S, Chaturvedi SK, Basu PS, Babbar A et al (2014a) Climate change and heat stress tolerance in chickpea. In: Tuteja N, Gill SS (eds) Climate change and plant abiotic stress tolerance. Wiley-VCH Verlag GmbH & Co, KGaA, Weinheim, pp 839–855Google Scholar
  24. Gaur PM, Thudi M, Srinivasan S, Varshney RK (2014b) Advances in Chickpea genomics. In: Gupta S, Nadarajan N, Gupta DS (eds) Legumes in the Omic Era. Springer, New York, pp 73–94CrossRefGoogle Scholar
  25. Gumber RK, Sarvjeet S (1996) Genetics of flowering time in chickpea: a preliminary report. Crop Improv 23:295–296Google Scholar
  26. Hegde VS (2010) Genetics of flowering time in chickpea in a semi-arid environment. Plant Breed 129:683–687CrossRefGoogle Scholar
  27. Hossain S, Ford R, McNeil DL, Pittock C, Pannozzo JF (2010) Development of a selection tool for seed shape and QTL analysis of seed shape with other morphological traits for selective breeding in chickpea (Cicer arietinum L.). Aust J Crop Sci 4:278–288Google Scholar
  28. Hovav R, Upadhyaya KC, Beharav A, Abbo S (2003) Major flowering time gene and polygene effects on chickpea seed weight. Plant Breed 122:539–541CrossRefGoogle Scholar
  29. IARI (2006) New source of earliness in kabuli chickpea. Annual Report 2005–2006. Indian Agricultural Research Institute, New Delhi, India, p. 35Google Scholar
  30. Jamalabadi JG, Saidi A, Karami E, Kharkesh M, Talebi R (2013) Molecular mapping and characterization of genes governing time to flowering, seed weight, and plant height in an intraspecific genetic linkage map of chickpea (Cicer arietinum). Biochem Genet 51:387–397CrossRefPubMedGoogle Scholar
  31. Koebner R, Saxena KB, Byth DE, Wallis ES (1991) Inheritance of flowering time in pigeonpea. Int. Chickpea Pigeonpea Newsl 1:12Google Scholar
  32. Kumar J, Abbo S (2001) Genetics of flowering time in chickpea and its breeding on productivity in semiarid environments. Adv Agron 72:107–137CrossRefGoogle Scholar
  33. Kumar J, Rao BV (1996) Super early chickpea developed at ICRISAT Asia center. Int. Chickpea Pigeonpea Newsl 3:17–18Google Scholar
  34. Kumar J, van Rheenen HA (2000) A major gene for time of flowering in chickpea. J Hered 91:67–68CrossRefPubMedGoogle Scholar
  35. Kumar J, Srivastava RK, Ganesh M (2000) Penetrance and expressivity of the gene for double-podding in chickpea. J Hered 91:234–236CrossRefPubMedGoogle Scholar
  36. Kumar J, Pannu RK, Rao BV (2001) Development of a short duration chickpea for the subtropics. Int. Chickpea Pigeonpea Newsl 8:7–8Google Scholar
  37. Lichtenzveig J, Bonfil DJ, Zhang HB, Shtienberg D, Abbo S (2006) Mapping quantitative trait loci in chickpea associated with time to flowering and resistance to Didymella rabiei, the causal agent of Ascochyta blight. Theor Appl Genet 113:1357–1369CrossRefPubMedGoogle Scholar
  38. McBlain B, Bernard RL (1987) A new gene affecting the time of flowering and maturity in soybean. J Hered 78:160–162Google Scholar
  39. Murfet IC (1985) Pisum sativum. In: Halevy AH (ed) Handbook of Flowering. CRC Press, Boca Raton, pp 97–126Google Scholar
  40. Or E, Hovav R, Abbo S (1999) A major gene for flowering time in chickpea. Crop Sci 39:315–322Google Scholar
  41. Pundir RPS, Reddy KN, Mangesha MH (1988) ICRISAT chickpea germplasm catalogue: evaluation and analysis. ICRISAT, PatancheruGoogle Scholar
  42. Ray JD, Hinson K, Manjono JEB, Malo MF (1995) Genetic control of a long-juvenile trait in soybean. Crop Sci 35:1001–1006CrossRefGoogle Scholar
  43. Rehman AU, Malhotra RS, Bett K, Tar’an B, Bueckert R, Warkentin TD (2011) Mapping QTL associated with traits affecting grain yield in chickpea (Cicer arietinum L.) under terminal drought stress. Crop Sci 51:450–463CrossRefGoogle Scholar
  44. Reid JB (1979) Flowering in Pisum: effects of the parental environment. Ann Bot 44:461–467Google Scholar
  45. Roberts EH, Hadley P, Summerfield RJ (1985) Effects of temperature and photoperiod on flowering in chickpea (Cicer arietinum L.). Ann Bot 55:881–892Google Scholar
  46. Rubio J, Flores F, Moreno MT, Cubero JI, Gil J (2004) Effects of erect/bushy habit, single/double pod and late/early flowering genes on yield and seed size and their stability in chickpea. Field Crops Res 90:255–262CrossRefGoogle Scholar
  47. Sandhu JS, Gupta SK, Gaur PM, Saxena AK, Sharma S, Kaur P (2007) Studies on early podding varieties and post-harvest management of immature green grains of chickpea to be used as vegetable. Acta Hortic 752:353–358Google Scholar
  48. Sarker A, Erskine W, Sharma B, Tyagi MC (1999) Inheritance and linkage replationships of days to flower and morphological loci in lentil (Lens culinaris Medikus subsp. Culinaris). J Hered 90:270–275CrossRefGoogle Scholar
  49. Saxena NP (1984) Chickpea. In: Goldworthy PR, Fisher NM (eds) The physiology of tropical field crops. Wiley, New York, pp 419–452Google Scholar
  50. Saxena KB, Sharma D (1990) Pigeonpea: genetics. In: Nene YL, Hall SD, Sheila VK (eds) The Pegionpea. CAB International, Wallingford, pp 137–157Google Scholar
  51. Sheldrake AR, Saxena NP, Krishnamurthy L (1978) The expression and influence on yield of the double podded character in chickpeas (Cicer arietinum L.). Field Crops Res 1:243–253CrossRefGoogle Scholar
  52. Singh KB, Bejiga G, Malhotra RS (1990) Associations of some characters with seed yield in chickpea collections. Euphytica 49:83–88CrossRefGoogle Scholar
  53. Subbarao GV, Johansen C, Slinkard AE, Nageswara Rao RC, Saxena NP, Chauhan YS (1995) Strategies for improving drought resistance in grain legumes. Critic Rev Plant Sci 14:469–523CrossRefGoogle Scholar
  54. Than AM, Maw JB, Aung T, Gaur PM, Gowda CLL (2007) Development and adoption of improved chickpea varieties in Myanmar. J SAT Agric Res 5(1). Available online at http://www.ejournal.icrisat.orgvolume5/ChickPea_PigeonPea/cp1.pdf/. Accessed 10 Sep 2014
  55. Upadhyaya HD, Salimath PM, Gowda CLL, Singh S (2007) New early-maturing germplasm lines for utilization in chickpea improvement. Euphytica 157:195–208CrossRefGoogle Scholar
  56. Varshney RK, Mohan SM, Gaur PM, Gangarao NVPR, Pandey MK, Bohra A, Sawargaonkar S, Kimurto PK, Janila P, Saxena KB et al (2013a) Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnol Adv 31:1120–1134CrossRefPubMedGoogle Scholar
  57. Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG et al (2013b) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat Biotechnol 31:240–246CrossRefPubMedGoogle Scholar
  58. Warkentin T, Vandenberg A, Banniza S, Tar’an B, Tullu A, Lulsdorf M, Anbessa Y, Slinkard A, Malhotra R, Kumar J (2003) Breeding chickpea for improved Ascochyta blight resistance and early maturity in western Canada. In: Sharma RN, Yasin M, Swami SL, Khan MA, William AJ (eds) Proceedings of International Chickpea Conference, Indira Gandhi Agricultural University, 20-22 Jan. Raipur, India, pp 1–4Google Scholar

Copyright information

© Springer Science+Business Media Dordrecht 2014

Authors and Affiliations

  • Pooran M. Gaur
    • 1
  • Srinivasan Samineni
    • 1
  • Shailesh Tripathi
    • 2
  • Rajeev K. Varshney
    • 1
  • C. L. Laxmipathi Gowda
    • 1
  1. 1.International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)HyderabadIndia
  2. 2.Indian Agricultural Research Institute (IARI)New DelhiIndia

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