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Seed development-related expression of ARGONAUTE4_9 class of genes in barley: possible role in seed dormancy

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Abstract

Resistance to pre-harvest sprouting is an important breeding objective for cereal crops like barley and wheat. Seed dormancy, which determines the resistance or susceptibility to pre-harvest sprouting (PHS), is a complex trait. It is largely controlled by the antagonistic action of the plant hormones abscisic acid and gibberellic acid, but also has a large component of genotype × environment interaction. Recent studies have revealed a role for epigenetic changes through histone modification in controlling seed dormancy. However, the role of DNA methylation in seed development and dormancy is not known. In this study, we explored the role of ARGONAUTE4_9 class genes of the DNA methylation pathway in seed development and dormancy in barley. Our results show that the two AGO4_9 class genes in barley, i.e. AGO1002 and AGO1003, are preferentially expressed in ovaries at meiosis and in embryos 25 days after pollination (DAP). The expression of AGO1003 is two to fivefold higher than that of AGO1002 in these tissues, demonstrating differential expression of these genes. We also analysed the expression of AGO1003 in embryos of PHS-resistant and -susceptible varieties at 25 DAP and found a significant variation in the expression of this gene in seeds of dormant and non-dormant lines. The observed expression pattern of AGO1002 and AGO1003 suggests a possible role in sporogenesis and post-fertilization seed development. Indirectly these results imply a potential role of DNA methylation in seed development and seed dormancy.

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References

  • Barrero JM, Jacobsen J, Gubler F (2008) Seed dormancy: approaches for finding new gene in cereals. In: Pua EC, Davey MR (eds) Plant developmental biology—biotechnological perspectives, vol 1. Springer, Berlin Heidelberg, pp 361–381

  • Bentsink L, Hanson J, Hanhart CJ, Blankestijn-de Vries H, Coltrane C, Keizer P, El-Lithy M, Alonso-Blanco C, de Andrés MT, Reymond M, van Eeuwijk F, Smeekens S, Koornneef M (2010) Natural variation for seed dormancy in arabidopsis is regulated by additive genetic and molecular pathways. Proc Natl Acad Sci USA 107:4264–4269

    Google Scholar 

  • Fang J, Chu C (2008) Abscisic acid and the pre-harvest sprouting in cereals. Plant Signal Behav 3:1046–1048

    Article  PubMed  Google Scholar 

  • Finkelstein R, Reeves W, Ariizumi T, Steber C (2008) Molecular aspects of seed dormancy. Annu Rev Plant Biol 59:387–415

    Article  PubMed  CAS  Google Scholar 

  • Fu W, Wu K, Duan J (2007) Sequence and expression analysis of histone deacetylases in rice. Biochem Biophys Res Commun 356:843–850

    Article  PubMed  CAS  Google Scholar 

  • Gao W, Clancy JA, Han F, Prada D, Kleinhofs A, Ullrich SE (2003) Molecular dissection of a dormancy QTL region near the chromosome 7 (5H) L telomere in barley. Theor Appl Genet 107:552–559

    Article  PubMed  CAS  Google Scholar 

  • Holdsworth MJ, Bentsink L, Soppe WJ (2008) Molecular networks regulating arabidopsis seed maturation, after-ripening, dormancy and germination. New Phytol 179:33–54

    Article  PubMed  CAS  Google Scholar 

  • Hutvagner G, Simard MJ (2008) Argonaute proteins: key players in RNA silencing. Natl Rev Mol Cell Biol 9:22–32

    Article  CAS  Google Scholar 

  • Kapazoglou A, Tondelli A, Papaefthimiou D, Ampatzidou H, Francia E, Stanca MA, Bladenopoulos K, Tsaftaris AS (2010) Epigenetic chromatin modifiers in barley: IV. The study of barley polycomb group (PcG) genes during seed development and in response to external ABA. BMC Plant Biol 10:73

    Article  PubMed  Google Scholar 

  • Ketting RF (2011) The many faces of RNAi. Dev Cell 20:148–161

    Article  PubMed  CAS  Google Scholar 

  • Liu Y, Koornneef M, Soppe WJJ (2007) The absence of histone H2B monoubiquitination in the arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy. Plant Cell 19:433–444

    Article  PubMed  Google Scholar 

  • Mallory A, Vaucheret H (2010) Form, function, and regulation of ARGONAUTE proteins. Plant Cell 22:3879–3889

    Article  PubMed  CAS  Google Scholar 

  • McCarty DR (1995) Genetic control and integration of maturation and germination pathways in seed development. Annu Rev Plant Physiol Plant Mol Biol 46:71–93

    Article  CAS  Google Scholar 

  • Nyachiro J, Zantinge JL, Helm JH, Juskiw PE, Salmon DF, Chisholm S, Hartman Z (2005). In: J. Spunar, Janikova J (eds) Genotypic variations in preharvest sprouting resistance and seed dormancy in barley. Proc ASSA-CSSA-SSSA Annu Meet. ASSA-CSSA-SSSA, Madison

  • Ng T, Yu F, Roy S (2006) A homologue of the vertebrate SET domain and zinc finger protein Blimp-1 regulates terminal differentiation of the tracheal system in the Drosophila embryo. Dev Genes Evol 216(5):243–252

    Google Scholar 

  • Olmedo-Monfil V, Durán-Figueroa N, Arteaga-Vázquez M, Demesa-Arĕvalo E, Autran D, Grimanelli D, Slotkin RK, Martienssen RA, Vielle-Calzada JP (2010) Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature 464:628–632

    Google Scholar 

  • Peng J, Harberd NP (2002) The role of GA-mediated signalling in the control of seed germination. Curr Opin Plant Biol 5:376–381

    Article  PubMed  CAS  Google Scholar 

  • Shen Q, Chen CN, Brands A, Pan SM, Ho TH (2001) The stress- and abscisic acid-induced barley gene HVA22: developmental regulation and homologues in diverse organisms. Plant Mol Biol 45:327–340

    Article  PubMed  CAS  Google Scholar 

  • Singh J, Zhang S, Chen C, Cooper L, Bregitzer P, Sturbaum A, Hayes PM, Lemaux PG (2006) High-frequency Ds remobilization over multiple generations in barley facilitates gene tagging in large genome cereals. Plant Mol Biol 62:937–950

    Article  PubMed  CAS  Google Scholar 

  • Singh M, Lewis PE, Hardeman K, Bai L, Rose JK, Mazourek M, Chomet P, Brutnell TP (2003) Activator mutagenesis of the pink scutellum1/viviparous7 locus of maize. Plant Cell 15:874–884

    Article  PubMed  CAS  Google Scholar 

  • Singh M, Goel S, Meeley RB, Dantec C, Parrinello H, Michaud C, Leblanc O, Grimanelli D (2011) Production of viable gametes without meiosis in maize deficient for an ARGONAUTE protein. Plant Cell 23:443–458

    Article  PubMed  CAS  Google Scholar 

  • Sreenivasulu N, Radchu V, Strickert M, Miersch O, Weschke W, Wobus U (2006) Gene expression patterns reveal tissue-specific signaling networks controlling programmed cell death and ABA-regulated maturation in developing barley seeds. Plant J 4:310–327

    Article  Google Scholar 

  • Sridha S, Wu K (2006) Identification of AtHD2C as a novel regulator of abscisic acid responses in Arabidopsis. Plant J 46:124–133

    Article  PubMed  CAS  Google Scholar 

  • Sridhar VV, Kapoor A, Zhang K, Zhu J, Zhou T, Hasegawa PM (2007) Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination. Nature 447:735–738

    Article  PubMed  CAS  Google Scholar 

  • Ullrich SE, Clancy JA, del BIA, Lee H, Jitkov A, Han F, Kleinhofs A, Matsui K (2008) Genetic analysis of pre-harvest sprouting in barley. Mol Breed 21:249–259

  • Zhao S, Fernald RD (2005) Comprehensive algorithm for quantitative real-time polymerase chain reaction. J Comput Biol 12:1047–1064

    Article  PubMed  CAS  Google Scholar 

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Acknowledgements

This study is being supported by Natural Sciences and Engineering Research Council (NSERC) of Canada. The authors thank Neil Dylan Lamb-Palmer for help with the phylogenetic analysis.

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Correspondence to Jaswinder Singh.

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Singh, M., Singh, J. Seed development-related expression of ARGONAUTE4_9 class of genes in barley: possible role in seed dormancy. Euphytica 188, 123–129 (2012). https://doi.org/10.1007/s10681-012-0624-1

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  • DOI: https://doi.org/10.1007/s10681-012-0624-1

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