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Molecular S-genotyping and determination of S-RNase-based incompatibility groups in loquat [Eriobotrya japonica (Thunb.) Lindl.]

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Abstract

Loquat (Eriobotrya japonica Lindl.; Pyrinae, Rosaceae) is an evergreen fruit tree which is acquiring increasing importance as an alternative crop in warm-temperate and subtropical regions. Recent pollination studies suggest that crop intensification has resulted in a reduction of fruit productivity in different locations. Loquat exhibits gametophytic self-incompatibility (GSI) and, consequently, fruit set strongly depends on cross-pollination between intercompatible cultivars. S-genotyping and incompatibility group assignment is therefore essential for adequate loquat orchard design. This study reports the molecular characterization of the S-RNase allele composition of 31 loquat cultivars grown in Spain. PCR with primers developed from loquat S-RNase sequences was used in combination with high-performance capillary polyacrilamide electrophoresis for the fine-evaluation of length polymorphisms at the S-RNase gene. This approach allowed to uncover a new S-RNase allele (S 5), whose sequence is reported and to characterize the first six S-RNase-based incompatibility groups (I–VI) in loquat, resulting from the combination of five S-alleles (S 1S 5). The large number of cultivars that could be assigned to only six groups suggests a narrow genetic base for this crop in Spain and stresses the need for careful determination of the S-genotype of cultivars in an attempt to overcome production problems associated with inadequate pollination.

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References

  • Carrera L, Sanzol J, Herrero M, Hormaza JI (2009) Genomic characterization of self-incompatibility ribonucleases (S-RNases) in loquat (Eriobotrya japonica Lindl.) (Rosaceae, Pyrinae). Mol Breed 23:539–551

    Article  CAS  Google Scholar 

  • Choi C, Tao R, Andersen RL (2002) Identification of self-incompatibility alleles and pollen incompatibility groups in sweet cherry by PCR based S-allele typing and controlled pollination. Euphytica 123:9–20

    Article  CAS  Google Scholar 

  • Cuevas J, Hueso JJ, Puertas M (2003) Pollination requirements of loquat (Eriobotrya japonica Lindl.), cv Algerie. Fruits 58:157–165

    Article  Google Scholar 

  • Gisbert AD, Romero C, Martinez-Calvo J, Leida C, Llacer G, Badenes ML (2009) Genetic diversity evaluation of a loquat (Eriobotrya japonica (Thunb) Lindl) germplasm collection by SSRs and S-allele fragments. Euphytica 168:121–134

    Article  CAS  Google Scholar 

  • Guerra ME, Rodrigo J, López-Corrales M, Wünsch A (2009) S-RNase genotyping and incompatibility groups assignment by PCR and pollination experiments in Japanese plum. Plant Breed 128:304–311

    Article  CAS  Google Scholar 

  • Hormaza JI (2002) Molecular characterization and similarity relationships among apricot (Prunus armeniaca L.) genotypes using simple sequence repeats. Theor Appl Genet 104:321–328

    Article  PubMed  CAS  Google Scholar 

  • Ishimizu T, Inoue K, Shimonaka M, Saito T, Terai O, Norioka S (1999) PCR-based method for identifying the S-genotypes of Japanese pear cultivars. Theor Appl Genet 98:961–967

    Article  CAS  Google Scholar 

  • Janssens GA, Goderis IJ, Broekaert WF, Broothaerts W (1995) A molecular method for S-allele identification in apple based on allele-specific PCR. Theor Appl Genet 91:691–698

    Article  CAS  Google Scholar 

  • Jefferies CJ, Belcher AR (1974) A fluorescent brightener used for pollen tube identification in vivo. Stain Technol 49:199–202

    PubMed  CAS  Google Scholar 

  • Johansen DA (1940) Plant Microtechnique. McGraw-Hill, New York

    Google Scholar 

  • Lin SQ (2007) World loquat production and research with special reference to China. Acta Hort 750:37–44

    Google Scholar 

  • Linskens H, Esser K (1957) Über eine spezifische Anfärbung der Pollenschläuche im Griffel und die Zahl der Kallosepfropfen nach Selbstung und Fremdung. Naturwissenschaften 44:16

    Article  Google Scholar 

  • Marchese A, Tobutt KR, Raimondo A, Motisi A, Boskovic RI, Clarke J, Caruso T (2007) Morphological characteristics, microsatellite fingerprinting and determination of incompatibility genotypes of Sicilian sweet cherry cultivars. J Hort Sci Biotech 82:41–48

    CAS  Google Scholar 

  • Niska R, Goldway M, Schneider D (2010) S6-RNase is a marker for self-incompatibility in loquat (Eriobotrya japonica Lindl.). HortScience 45:1146–1149

    Google Scholar 

  • Potter D, Eriksson T, Evans RC, Oh S, Smedmark JEE, Morgan DR, Kerr M, Robertson KR, Arsenault M, Dickinson TA, Campbell CS (2007) Phylogeny and classification of Rosaceae. Plant Sys Evol 266:5–43

    Article  Google Scholar 

  • Rodrigo J, Herrero M (1996) Evaluation of pollination as the cause of erratic fruit set in apricot ‘Moniqui’. J Hort Sci 71:801–805

    Google Scholar 

  • Sanzol J, Herrero M (2002) Identification of self-incompatibility alleles in pear cultivars (Pyrus communis L.). Euphytica 128:325–331

    Article  CAS  Google Scholar 

  • Sanzol J, Robbins TP (2008) Combined analysis of S-alleles in European pear by pollinations and PCR-based S-genotyping; correlation between S-phenotypes and S-RNase genotypes. J Am Soc Hort Sci 133:213–224

    Google Scholar 

  • Soler E, Martínez-Calvo J, Llácer G, Badenes ML (2007) Loquat in Spain: production and marketing. Acta Hort 750:45–48

    Google Scholar 

  • Soriano JM, Romero C, Vilanova S, Llacer G, Badenes ML (2005) Genetic diversity of loquat germplasm [Eriobotrya japonica (Thunb) Lindl] assessed by SSR markers. Genome 48:108–114

    Article  PubMed  CAS  Google Scholar 

  • Tamura M, Ushijima K, Sassa H, Hirano H, Tao R, Gradziel TM, Dandekar AM (2000) Identification of self-incompatibility genotypes of almond by allele-specific PCR analysis. Theor Appl Genet 101:344–349

    Article  CAS  Google Scholar 

  • Tao R, Iezzoni AF (2010) The S-RNase-based gametophytic self-incompatibility system in Prunus exhibits distinct genetic and molecular features. Sci Hort 124:423–433

    Article  CAS  Google Scholar 

  • Vilanova S, Badenes ML, Martinez-Calvo J, Llacer G (2001) Analysis of loquat germplasm (Eriobotrya japonica Lindl) by RAPD molecular markers. Euphytica 121:25–29

    Article  CAS  Google Scholar 

  • Vilanova S, Romero C, Llacer G, Badenes ML, Burgos L (2005) Identification of self-(in) compatibility alleles in apricot by PCR and sequence analysis. J Am Soc Hort Sci 130:893–898

    CAS  Google Scholar 

  • Wünsch A, Hormaza JI (2004) S-allele identification by PCR analysis in sweet cherry cultivars. Plant Breed 123:327–331

    Article  Google Scholar 

  • Yamane H, Tao R (2009) Molecular basis of self-(in) compatibility and current status of S-genotyping in Rosaceous fruit trees. J Jpn Soc Hort Sci 78:137–157

    Article  CAS  Google Scholar 

  • Yamane H, Tao R, Murayama H, Sugiura A (2000) Determining the S-genotypes of several sweet cherry cultivars based on PCR-RFLP analysis. J Hort Sci Biotech 75:562–567

    CAS  Google Scholar 

  • Zhang H, Peng S, Cai L, Fang D (1990) The germplasm resources of the genus Eriobotrya with special reference on the origin of E. japonica Lindl. Acta Hort Sinica 17:5–12

    Google Scholar 

  • Zuccherelli S, Tassinari P, Broothaerts W, Tartarini S, Dondini L, Sansavini S (2002) S-allele characterization in self-incompatible pear (Pyrus communis L.). Sex Plant Reprod 15:153–158

    Article  CAS  Google Scholar 

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Acknowledgements

The authors thank Pilar Escribano and Yolanda Verdún for help in the molecular analyses, and Reyes López for help with the microscope observations. LC was supported by a doctoral (FPI) fellowship of the Spanish Ministry of Education and with a Torres Quevedo contract. Financial support for this work was provided by the Spanish Ministry of Education (project grants AGL2006-13529-C02, AGL2007-60130/AGR, AGL2009-12621-CO1-C02 and AGL2010-15140), GIEX-Aragón 43 and a contract with Coop. Ruchey (Callosa d’en Sarrià, Spain).

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Correspondence to Jose I. Hormaza.

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Carrera, L., Sanzol, J., Soler, E. et al. Molecular S-genotyping and determination of S-RNase-based incompatibility groups in loquat [Eriobotrya japonica (Thunb.) Lindl.]. Euphytica 181, 267–275 (2011). https://doi.org/10.1007/s10681-011-0426-x

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