Environmental Monitoring and Assessment

, Volume 185, Issue 3, pp 2281–2295 | Cite as

Benthic macrofaunal assemblages of the San Francisco Estuary and Delta, USA

  • Bruce Thompson
  • J. Ananda Ranasinghe
  • Sarah Lowe
  • Aroon Melwani
  • Stephen B. Weisberg
Article

Abstract

The spatial and temporal distribution of macrobenthic assemblages in the San Francisco Estuary and Sacramento–San Joaquin River Delta were identified using hierarchical cluster analysis of 501 samples collected between 1994 and 2008. Five benthic assemblages were identified that were distributed primarily along the salinity gradient: (1) a polyhaline assemblage that inhabits the Central Bay, (2) a mesohaline assemblage that inhabits South Bay and San Pablo Bay, (3) a low-diversity oligohaline assemblage primarily in Suisun Bay, (4) a low-diversity sand assemblage that occurs at various locations throughout the Estuary, and (5) a tidal freshwater assemblage in the Delta. Most sites were classified within the same assemblage in different seasons and years, but a few sites switched assemblage designations in response to seasonal changes in salinity from freshwater inflows.

Keywords

Benthos Macrofauna San Francisco Bay Estuary Delta 

References

  1. Bald, J., Borja, A., Muxika, I., Franco, J., & Valencia, V. (2005). Assessing reference conditions and physio-chemical status according to the European water framework directive: A case-study from the Basque Country (Northern Spain). Marine Pollution Bulletin, 50, 1508–1522.CrossRefGoogle Scholar
  2. Boesch, D. F. (1973). Classification and community structure of macrobenthos in the Hampton roads area, Virginia. Marine Biology, 21, 226–244.CrossRefGoogle Scholar
  3. Boesch, D. F. (1977). A new look at the zonation of benthos along the estuarine gradient. In B. C. Coull (Ed.), Ecology of marine benthos (pp. 245–266). Columbia: University of South Carolina Press.Google Scholar
  4. Bradfield, G. E., & Kenkel, N. C. (1987). Nonlinear ordination using shortest path adjustment of ecological distances. Ecology, 68, 50–753.CrossRefGoogle Scholar
  5. Bray, J. R., & Curtis, J. T. (1957). An ordination of the upland forest communities of southern Wisconsin. Ecological Monographs, 27, 25–349.CrossRefGoogle Scholar
  6. Carriker, M. R. (1967). Ecology of estuarine benthic invertebrates: A perspective. In G. Lauff (Ed.), Estuaries (pp. 442–487). Washington DC: American Association for the Advancement of Science. Publication 83.Google Scholar
  7. Clifford, H. T., & Stephenson, W. (1975). An introduction to numerical classification. New York: Academic Press.Google Scholar
  8. Conomos, T. J. (1979). Properties and circulation of San Francisco Bay waters. In T. J. Conomos (Ed.), San Francisco Bay, the urbanized estuary (pp. 192–221). San Francisco: American Association for the Advancement of Science, Pacific Division.Google Scholar
  9. Conomos, T. J., Smith, R. E., & Gartner, J. W. (1985). Environmental setting of San Francisco Bay. Hydrobiologia, 129, 1–12.CrossRefGoogle Scholar
  10. Dauer, D. M., Stokes, T. L., Jr., Barber, H. R., Ewing, R. M., & Sourbeer, J. W. (1984). Macrobenthic communities of the lower Chesapeake Bay. IV. Baywide transects and the inner continental shelf. Internationale Revue der Gesamten Hydrobiologie, 69, 1–22.CrossRefGoogle Scholar
  11. Dauer, D. M., Ewing, R. M., & Rodi, A. J., Jr. (1987). Macrobenthic distribution within the sediment along an estuarine salinity gradient. Internationale Revue der Gesamten Hydrobiologie, 72, 529–538.CrossRefGoogle Scholar
  12. de Paz, L., Patrício, J., Marques, J. C., Borja, A., & Laborda, A. J. (2008). Ecological status assessment in the lower eco estuary (Spain). The challenge of habitat heterogeneity integration: A benthic perspective. Marine Pollution Bulletin, 56, 1275–1283.CrossRefGoogle Scholar
  13. Diaz, R. J. (1989). Pollution and tidal benthic communities of the James River Estuary, Virginia. Hydrobiologica, 180, 195–211.CrossRefGoogle Scholar
  14. DWR. (2006). Water quality conditions in the Sacramento-San Joaquin Delta and Suisun and San Pablo Bays during 2003. Sacramento: California Department of Water Resources, Division of Environmental Services.Google Scholar
  15. Engle, V. D., Summers, K. J., & Gaston, G. G. (1994). A benthic index of environmental condition of the Gulf of Mexico Estuaries. Estuaries, 17, 372–384.CrossRefGoogle Scholar
  16. Gower, J. C. (1967). Multivariate analysis and multidimensional geometry. The Statistician, 17, 13–28.CrossRefGoogle Scholar
  17. Gross, E. S., Koseff, J. R., & Monismith, S. G. (1999). Three-dimensional salinity simulations of South San Francisco Bay. Journal of Hydraulic Engineering, 25, 1199–1209.CrossRefGoogle Scholar
  18. Hammerstrom, K.K., Ranasinghe, J.A., Weisberg, S.B., Oliver, J.S., Fairey, W.R., Slattery, P.N., & Oakden J.N. (2012). The effect of sample area and sieve size on benthic macrofaunal community condition assessments in California enclosed bays and estuaries. Integrated Environmental Assessment and Management. doi:10.1002/ieam.78
  19. Hughes, R. M., Larsen, D. P., & Omernik, J. M. (1986). Regional reference sites: A method for assessing stream potentials. Environmental Management, 10, 29–635.CrossRefGoogle Scholar
  20. Hyland, J. L., Balthis, W. L., Posey, M. H., Hackney, C. T., & Alphin, T. D. (2004). The soft-bottom macrobenthos of North Carolina estuaries. Estuaries, 27, 501–514.CrossRefGoogle Scholar
  21. Jassby, A. D., Kimmerer, W. J., Monismith, S., Armor, C., Cloern, J. E., Powell, T. M., et al. (1995). Isohaline position as a habitat indicator for estuarine populations. Ecological Applications, 5, 272–289.CrossRefGoogle Scholar
  22. Jassby, A. D., Cloern, J. E., & Cole, B. E. (2002). Annual primary production: Patterns and mechanisms of change in a nutrient-rich tidal ecosystem. Limnology and Oceanography, 47, 698–712.CrossRefGoogle Scholar
  23. Lance, G. H., & Williams, W. T. (1967). A general theory of classificatory sorting strategies. I. Hierarchical systems. Computer Journal, 9, 373–380.Google Scholar
  24. Llansó, R. J., Aasen, S., & Welch, K. I. (1998). Marine sediment monitoring program-II. Distribution and structure of benthic communities in Puget Sound, 1989–1993 (pp. 98–328). Olympia: Washington State Department of Ecology, Publication.Google Scholar
  25. Moyle, P. B., Lund, J. R., Bennett, W. A., & Fleenor, W. E. (2010). Habitat variability and complexity in the upper San Francisco Estuary. San Francisco Estuary and Watershed Science, 8, 1–18.Google Scholar
  26. Nichols, F. H. (1973). A review of benthic faunal surveys in San Francisco Bay (p. 677). Menlo Park: U.S. Geological Survey, Circular.Google Scholar
  27. Nichols, F. H., & Thompson, J. K. (1985). Time scales of change in the San Francisco Bay benthos. Hydrobiologia, 129, 121–138.CrossRefGoogle Scholar
  28. Nichols, F. H., Thompson, J. K., & Schemel, L. E. (1990). Remarkable invasion of San Francisco Bay (CA) by the Asian Clam Potamocorbula amurensis. II. Displacement of a former community. Marine Ecology Progress Series, 66, 95–101.CrossRefGoogle Scholar
  29. Peterson, H. A., & Vayssiere, M. (2010). Benthic assemblage variability in the upper San Francisco Estuary: A 27-year retrospective. San Francisco Estuary and Watershed Science, 8, 18–30.Google Scholar
  30. Pinto, R., Patricio, J., Baeta, A., Fath, B. D., Neto, J. M., & Marques, J. C. (2009). Review and evaluation of estuarine biotic indices to assess benthic condition. Ecological Indicators, 9, 1–25.CrossRefGoogle Scholar
  31. Ranasinghe, J. A., Weisberg, S. B., Smith, R. W., Montagne, D. E., Thompson, B., Oakden, J. M., Huff, D. D., Cadien, D. B., Velarde, R. G., & Ritter, K. J. (2009). Calibration and evaluation of five indicators of benthic community condition in two California bay and estuary habitats. Marine Pollution Bulletin, 59, 5–13.CrossRefGoogle Scholar
  32. Ranasinghe, J.A., Welch, K.I., Slattery, P.N., Montagne, D.E., Huff, D.D., Lee II, H., Hyland, J.L., Thompson, B., Weisberg, S.B., Oakden, J.M., Cadien, D.B., & Velarde, RG. (2012). Habitat-related benthic macrofaunal assemblages of bays and estuaries of the western United States. Integrated Environmental Assessment and Management. doi:10.1002/ieam.20090591
  33. SCAMIT. (2008). A taxonomic listing of macro- and mega-invertebrates from infaunal & epibenthic monitoring programs in the Southern California Bight (5th ed.). Los Angeles: Southern California Association of Marine Invertebrate Taxonomists, Natural History Museum of Los Angeles County.Google Scholar
  34. Smith, R. W. (1976). Numerical analysis of ecological survey data. Los Angeles: University of Southern California, Ph.D. Thesis.Google Scholar
  35. Smith, R. W., Bernstein, B. B., & Cimberg, R. L. (1988). Community-environmental relationships in the benthos: Applications of multivariate analytical techniques. In D. F. Soule & G. S. Kleppel (Eds.), Marine Organisms as indicators (pp. 247–326). New York: Springer-Verlag.Google Scholar
  36. Thompson, B., & Lowe, S. (2002). Benthic assemblages in the Napa-Sonoma Marsh. Richmond: San Francisco Estuary Institute. Technical Report.Google Scholar
  37. Thompson, B., Lowe, S., & Gravitz, L. (1999). Sediment conditions near wastewater discharges in San Francisco Bay. Richmond: San Francisco Estuary Institute. Technical Report.Google Scholar
  38. Thompson, B., Lowe, S., & Kellogg, M. (2000). Results of the benthic pilot study 1994–1997: Macrobenthic assemblages of the San Francisco Bay-Delta and their responses to abiotic factors. Richmond: San Francisco Estuary Institute. Technical Report 39.Google Scholar
  39. U.S. EPA. (2004). National Coastal Condition Report II. Washington, DC: U.S. Environmental Protection Agency, Office of Research and Development, EPA-620/R-03/002.Google Scholar
  40. Van Dolah, R. F., Hyland, J. L., Holland, A. F., Rosen, J. S., & Snoots, T. R. (1999). A benthic index of biological integrity for assessing habitat quality in estuaries of the southeastern United States. Marine Environmental Research, 48, 269–283.CrossRefGoogle Scholar
  41. Weisberg, S. B., Ranasinghe, J. A., Schaffner, L. C., Diaz, R. J., Dauer, D. M., & Frithsen, J. B. (1997). An estuarine benthic index of biotic integrity (B-IBI) for Chesapeake Bay. Estuaries, 20, 149–158.CrossRefGoogle Scholar
  42. Williamson, M. H. (1978). The ordination of incidence data. Journal of Ecology, 66, 911–920.CrossRefGoogle Scholar

Copyright information

© Springer Science+Business Media B.V. 2012

Authors and Affiliations

  • Bruce Thompson
    • 1
  • J. Ananda Ranasinghe
    • 2
  • Sarah Lowe
    • 1
  • Aroon Melwani
    • 1
    • 3
  • Stephen B. Weisberg
    • 2
  1. 1.San Francisco Estuary InstituteRichmondUSA
  2. 2.Southern California Coastal Water Research ProjectCosta MesaUSA
  3. 3.Department of Biological SciencesMacquarie UniversitySydneyAustralia

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