Abstract
Tomato plants showing symptoms of yellow mottle and leaf distortion, first observed in eastern Cuba in 2007, have been shown to be associated with the presence of a novel bipartite begomovirus (genus Begomovirus, family Geminiviridae) species, Tomato yellow leaf distortion virus (ToYLDV), for which the DNA-A has already been sequenced. Here, we present the completion of ToYLDV genome characterization by cloning and sequencing the DNA-B component. In addition, we constructed infectious clones that were used to inoculate tomato, soybean, Nicotiana tabacum and N. benthamiana plants by a biolistic procedure. Cloned ToYLDV reproduced the symptoms observed in tomato in the field, thus confirming that this begomovirus is the causal agent of the disease present in Cuba.
Similar content being viewed by others
References
Amarakoon, I. I., Roye, M. E., Briddon, R. W., Bedford, I. D., & Stanley, J. (2008). Molecular and biological characterization of Macroptilium yellow mosaic virus from Jamaica. Plant Pathology, 57, 417–426.
Briddon, R. W., & Markham, P. G. (2000). Cotton leaf curl virus disease. Virus Research, 71, 151–159.
Brown, J. K., Idris, A. M., Torres-Jerez, I., Banks, G. K., & Wyatt, S. D. (2001). The core region of the coat protein gene is highly useful for establishing the provisional identification and classification of begomoviruses. Archives of Virology, 146, 1–18.
Carrillo-Tripp, J., Lozoya-Gloria, E., & Rivera-Bustamante, R. F. (2007). Symptom remission and specific resistance of pepper plants after infection by Pepper golden mosaic virus. Phytopathology, 97, 51–57.
Castillo-Urquiza, G. P., Becerra, J. E. A., Bruckner, F. P., Lima, A. T. M., Varsani, A., Alfenas-Zerbini, P., et al. (2008). Six novel Begomoviruses infecting tomato and associated weeds in southeastern Brazil. Archives of Virology, 153, 1985–1989.
Collins, A. M., & Roye, M. E. (2007). Two new bipartite begomoviruses infecting Wissadula amplissima in Jamaica. Plant Pathology, 56, 340.
Crespi, S., Accotto, G. P., Caciagli, P., & Gronenborn, B. (1991). Use of digoxigenin-labelled probes for detection and host-range studies of tomato yellow leaf curl geminivirus. Research in Virology, 142, 283–288.
Domínguez, M., Ramos, P. L., Echemendía, A. L., Peral, R., Crespo, J., Andino, V., et al. (2002). Molecular characterization of tobacco leaf rugose virus, a new begomovirus infecting tobacco in Cuba. Plant Disease, 86, 1050.
Domínguez, M., Ramos, P. L., Sánchez, Y., Crespo, J., Andino, V., Pujol, M., et al. (2009). Tobacco mottle leaf curl virus, a new begomovirus infecting tobacco in Cuba. Plant Pathology, 58, 786.
FAOSTAT data (2012). Retrieved January 5, 2012, from www.faostat.fao.org/faostat.
Fiallo-Olivé, E., Martínez-Zubiaur, Y., & Rivera-Bustamante, R. (2009a). Tomato yellow leaf distortion virus, a new bipartite begomovirus infecting tomato in Cuba. Plant Pathology, 58, 785.
Fiallo-Olivé, E., Rivera-Bustamante, R., & Martínez-Zubiaur, Y. (2009b). Tobacco yellow crinkle virus, a new bipartite begomovirus infecting tobacco and pepper in Cuba. Plant Pathology, 58, 785.
Fiallo-Olivé, E., Rivera-Bustamante, R., & Martínez-Zubiaur, Y. (2010a). First report of tobacco as a natural host of Euphorbia mosaic virus in Cuba. Plant Pathology, 59, 795.
Fiallo-Olivé, E., Martínez-Zubiaur, Y., Moriones, E., & Navas-Castillo, J. (2010b). Complete nucleotide sequence of Sida golden mosaic Florida virus and phylogenetic relationships with other begomoviruses infecting malvaceous weeds in the Caribbean. Archives of Virology, 155, 1535–1537.
Fiallo-Olivé, E., Navas-Castillo, J., Moriones, E., & Martínez-Zubiaur, Y. (2010c). Two novel begomoviruses belonging to different lineages infecting Rhynchosia minima. Archives of Virology, 155, 2053–2058.
Fiallo-Olivé, E., Navas-Castillo, J., Moriones, E., & Martínez-Zubiaur, Y. (2012). Begomoviruses infecting weeds in Cuba: increased host range and a novel virus infecting Sida rhombifolia. Archives of Virology, 157, 141–146.
Garzón-Tiznado, J. A., Torres-Pacheco, I., Ascencio-Ibañez, J. T., Herrera-Estrella, L., & Rivera-Bustamante, R. F. (1993). Inoculation of peppers with infectious clones of a new geminivirus by a biolistic procedure. Phytopathology, 83, 514–521.
González, G. A., & Valdés, R. S. (1995). Virus del encrespamiento amarillo de las hojas del tomate en Cuba. CEIBA, 36, 103.
Gregorio-Jorge, J., Bernal-Alcocer, A., Bañuelos-Hernández, B., Alpuche-Solís, A. G., Hernández-Zepeda, C., Moreno-Valenzuela, O., et al. (2010). Analysis of a new strain of Euphorbia mosaic virus with distinct replication specificity unveils a lineage of begomoviruses with short Rep sequences in the DNA-B intergenic region. Virology Journal, 7, 275.
Hall, G. C., Graham, A. P., & Roye, M. E. (2008). Tobacco leaf curl Cuba virus infects the weed Malachra alceifolia in Jamaica. Plant Pathology, 57, 398.
Hanley-Bowdoin, L., Settlage, S. B., Orozco, B. M., Nagar, S., & Robertson, D. (1999). Geminiviruses: Models for plant DNA replication, transcription and cell cycle regulation. Critical Review in Plant Sciences, 18, 71–106.
Idris, A. M., & Brown, J. K. (1998). Sinaloa tomato leaf curl geminivirus: biological and molecular evidence for a new subgroup III virus. Phytopathology, 88, 648–657.
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics, 23, 2947–2948.
Martin, D. P., Williamson, C., & Posada, D. (2005). RDP2: recombination detection and analysis from sequence alignments. Bioinformatics, 21, 260–262.
Martínez, Y., Zabalgogeazcoa, I., de Blas, C., Sánchez, F., Peralta, E. L., Romero, J., et al. (1996). Geminivirus associated with diseased tomatoes in Cuba. Journal of Phytopathology, 144, 277–279.
Martinez, Y., de Blas, C., Zabalgogeazcoa, I., Quiñones, M., Castilian, C., Peralta, E. L., et al. (1997). A bipartite geminivirus infecting tomatoes in Cuba. Plant Disease, 81, 1215.
Martínez, Y., Quinones, M., & Fonseca, D. (2003). National survey of tomato begomovirus in Cuba. Revista Protección Vegetal, 18, 168–175.
Martínez-Zubiaur, Y., Fiallo-Olivé, E., Carrillo-Tripp, J., & Rivera-Bustamante, R. (2008). First report of Tomato chlorosis virus infecting tomato in single and mixed infections with Tomato yellow leaf curl virus in Cuba. Plant Disease, 92, 836.
Morales, F. (2006). History and current distribution of begomoviruses in Latin America. Advances in Virus Research, 67, 127–162.
Morán, Y. M., Ramos, P. L., Domínguez, M., Fuentes, A. D., Sánchez, Y., & Crespo, J. A. (2006). Tobacco leaf curl Cuba virus, a new begomovirus infecting tobacco (Nicotiana tabacum) in Cuba. Plant Pathology, 55, 570.
Navas-Castillo, J., Fiallo-Olivé, E., & Sánchez-Campos, S. (2011). Emerging virus diseases transmitted by whiteflies. Annual Review of Phytopathology, 49, 219–248.
Polston, J. E., & Anderson, P. K. (1997). The emergence of whitefly-transmitted geminiviruses in tomato in the Western Hemisphere. Plant Disease, 81, 1358–1369.
Ramos, P. L., Guerra, O., Peral, R., Oramas, P., Guevara, R. G., & Rivera-Bustamante, R. (1997). Taino tomato mottle virus, a new bipartite Geminivirus from Cuba. Plant Disease, 81, 1095.
Ramos, P. L., Fernández, A., Castrillo, G., Díaz, L., Echemendía, A. L., Fuentes, A., et al. (2002). Macroptilium yellow mosaic virus, a new begomovirus infecting Macroptilium lathyroides in Cuba. Plant Disease, 86, 1049.
Ribeiro, S. G., Ambrozevicius, L. P., Ávila, A. C., Becerra, I. C., Calegario, R. F., Fernandes, J. J., et al. (2003). Distribution and genetic diversity of tomato-infecting begomoviruses in Brazil. Archives of Virology, 148, 281–295.
Rojas, M. R., Gilbertson, R. L., Russell, D. R., & Maxwell, D. P. (1993). Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Disease, 77, 340–347.
Rojas, M., Hagen, C., Lucas, W., & Gilbertson, R. (2005). Exploiting chinks the plant’s armor: evolution and emergence of geminiviruses. Annual Review of Phytopathology, 43, 361–394.
Tamura, K., Dudley, J., Nei, M., & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596–1599.
Varma, A., & Malathi, V. (2003). Emerging geminivirus problems: a serious threat to crop production. Annals of Applied Biology, 142, 145–164.
Acknowledgements
The authors are thankful to Dr. Enrique Moriones for the critical reading of the manuscript. E. F.-O. would like to thank the Red Latinoamericana de Botánica for a fellowship (RLB08-P10). The work in Cuba was partially supported by the International Foundation for Science, Stockholm, Sweden, through a grant (C/4778-1) to E. F.-O.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Fiallo-Olivé, E., Hernández-Zepeda, C., Trejo-Saavedra, D. et al. Complete genome and pathogenicity of Tomato yellow leaf distortion virus, a bipartite begomovirus infecting tomato in Cuba. Eur J Plant Pathol 134, 13–21 (2012). https://doi.org/10.1007/s10658-012-0016-3
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10658-012-0016-3