Skip to main content
Log in

Molecular identification of arsenic-resistant estuarine bacteria and characterization of their ars genotype

  • Published:
Ecotoxicology Aims and scope Submit manuscript

Abstract

In the present study, 44 arsenic-resistant bacteria were isolated through serial dilutions on agar plate with concentrations ≥0.05 mM of sodium arsenite and ≥10 mM of sodium arsenate from Mandovi and Zuari—estuarine water systems. The ars genotype characterization in 36 bacterial isolates (resistant to 100 mM of sodium arsenate) revealed that only 17 isolates harboured the arsA (ATPase), B (arsenite permease) and C (arsenate reductase) genes on the plasmid DNA. The arsA, B and C genes were individually detected using PCR in 16, 9 and 13 bacterial isolates respectively. Molecular identification of the 17 isolates bearing the ars genotype was carried using 16S rDNA sequencing. A 1300 bp full length arsB gene encoding arsenite efflux pump and a 409 bp fragment of arsC gene coding for arsenate reductase were isolated from the genera Halomonas and Acinetobacter. Phylogenetic analysis of arsB and arsC genes indicated their close genetic relationship with plasmid borne ars genes of E. coli and arsenate reductase of plant origin. The putative arsenate reductase gene isolated from Acinetobacter species complemented arsenate resistance in E. coli WC3110 and JM109 validating its function. This study dealing with isolation of native arsenic-resistant bacteria and characterization of their ars genes might be useful to develop efficient arsenic detoxification strategies for arsenic contaminated aquifers.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  • Achour AR, Bauda P, Billard P (2007) Diversity of arsenite transporter genes from arsenic-resistant soil bacteria. Res Microbiol 158:128–137

    Article  CAS  Google Scholar 

  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410

    CAS  Google Scholar 

  • Anderson CR, Cook GM (2004) Isolation and characterization of arsenate-reducing bacteria from arsenic-contaminated sites in New Zealand. Curr Microbiol 48:341–347

    Article  CAS  Google Scholar 

  • Branco R, Chung AP, Morais PV (2008) Sequencing and expression of two arsenic resistance operons with different functions in the highly arsenic-resistant strain Ochrobactrum tritici SCII24T. BMC Microbiol 8:95

    Article  Google Scholar 

  • Butcher BG, Deane SM, Rawlings DE (2000) The chromosomal arsenic resistance genes of Thiobacillus ferrooxidans have an unusual arrangement and confer increased arsenic and antimony resistance to Escherichia coli. Appl Environ Microbiol 66:1826–1833

    Article  CAS  Google Scholar 

  • Cai L, Liu G, Rensing C, Wang G (2009) Genes involve in arsenic transformation and resistance associated with different levels of arsenic-contaminated soils. BMC Microbiol 9:1471–2180

    Article  Google Scholar 

  • Cavalca L, Zanchi R, Corsini A, Colombo M, Romagnoli C, Canzi E, Andreoni V (2010) Arsenic-resistance bacteria associated with roots of the wild Cirsium arvense (L.) plant from an arsenic polluted soil, and screening of potential plant growth-promoting characteristics. Syst Appl Microbiol 33:154–164

    Article  CAS  Google Scholar 

  • Cervantes C, Ji G, Ramirez JL, Silver S (1994) Resistance to arsenic compounds in microorganisms. FEMS Microbiol Rev 15:355–367

    Article  CAS  Google Scholar 

  • Chang JS, Yoon IH, Lee JH, Kim KR, An J, Kim KW (2010) Arsenic detoxification potential of aox genes in arsenite oxidizing bacteria isolated from natural and constructed wetlands in the Republic of Korea. Environ Geochem Health 32:95–105

    Article  CAS  Google Scholar 

  • Chauhan NS, Ranjan R, Purohit HJ, Kalia VC, Sharma R (2009) Identification of genes conferring arsenic resistance to Escherichia coli from an effluent treatment plant sludge metagenomic library. FEMS Microbiol Ecol 67:130–139

    Article  CAS  Google Scholar 

  • Escalante G, Campos VL, Valenzuela C, Yanez J, Zaror C, Mondaca MA (2009) Arsenic resistant bacteria isolated from arsenic contaminated river in the Atacama desert (Chile). Bull Environ Contam Toxicol 83:657–661

    Article  CAS  Google Scholar 

  • Fan H, Su C, Wang Y, Yao J, Zhao K, Wang Y, Wang G (2008) Sedimentary arsenite-oxidizing and arsenate reducing bacteria associated with high arsenic ground water from Shanyin, Northwestern China. J Appl Microbiol 105:529–539

    Article  CAS  Google Scholar 

  • Filali BK, Taoufik J, Zeroual Y, Dzairi FZ, Talbi M, Blaghen M (2000) Waste water bacteria resistant to heavy metals and antibiotics. Curr Microbiol 41:151–156

    Article  CAS  Google Scholar 

  • Hartwig A, Groblinghoff UD, Beyersmann D, Nataranjan AT, Filon R, Mullenders LHF (1997) Interaction of arsenic(III) with nucleotide excision repair in UV-irradiated human fibroblasts. Carcinogenesis 18:399–405

    Article  CAS  Google Scholar 

  • Hughes MF (2002) Arsenic toxicity and its potential mechanisms of action. Toxicol Lett 133:1–16

    Article  CAS  Google Scholar 

  • Jackson CR, Dugas SL (2003) Phylogenetic analysis of bacterial and archeal arsC gene sequences suggests an ancient, common origin for arsenic reductase. BMC Evol Biol 3:18

    Article  Google Scholar 

  • Jackson CR, Harrison KG, Dugas SL (2005) Enumeration and characterization of culturable arsenate resistant bacteria in a large estuary. Syst Appl Microbiol 28:727–734

    Article  CAS  Google Scholar 

  • Kaur S, Kamli MR, Ali A (2009) Diversity of arsenate reductase genes (arsC genes) from arsenic-resistant environmental isolates of E. coli. Curr Microbiol 59:288–294

    Article  CAS  Google Scholar 

  • Lynn S, Lai HT, Gurr JR, Jan KY (1997) Arsenite retards DNA break rejoining by inhibiting DNA ligation. Mutagenesis 12:353–358

    Article  CAS  Google Scholar 

  • Macur RE, Wheeler JT, McDermott TR, Inskeep WP (2001) Microbial populations associated with the reduction and enhanced mobilization of arsenic in mine tailings. Environ Sci Technol 35:3676–3682

    Article  CAS  Google Scholar 

  • Mahimairaja S, Bolan NS, Adriano DC, Robinson B (2005) Arsenic contamination and its risk management in complex environmental settings. Adv Agron 86:2–64

    Google Scholar 

  • Mahtani S, Mavinkurve S (1979) Microbial purification of longifolene: a sesquiterpene. J Ferment Technol 57:529–533

    CAS  Google Scholar 

  • Marchesi JR, Sato T, Weightman AJ, Martin TA, Fry JC, Hiom SJ, Dymock D, Wade WG (1998) Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microbiol 64:795–799

    CAS  Google Scholar 

  • Martin P, DeMel S, Shi J, Gladysheva T, Gatti DL, Rosen BP, Edwards BFP (2001) Insights into the structure, solvation, and mechanism of the ArsC arsenate reductase, a novel arsenic detoxification enzyme. Structure 9:1071–1081

    Article  CAS  Google Scholar 

  • Martinez RJ, Wang Y, Raimondo MA, Coombs JM, Barkay T, Sobecky PA (2006) Horizontal gene transfer of PIB-type ATPases among bacteria isolated from radionuclide- and metal-contaminated subsurface soils. Appl Environ Microbiol 72:3111–3118

    Article  CAS  Google Scholar 

  • Matilda OJ, Hari HPC, Raphael DI, Omotayo RA (2010) The case for visual analytics of arsenic concentrations in foods. Int J Environ Res Public Health 7:1970–1983

    Article  Google Scholar 

  • Mukhopadhyay R, Rosen BP (2002) Arsenate reductases in prokaryotes and eukaryotes. Environ Health Persp 110:745–748

    Article  CAS  Google Scholar 

  • Mukhopadhyay R, Shi J, Rosen BP (2000) Purification and characterization of Acr2p, the Saccharomyces cerevisiae arsenate reductase. J Biol Chem 275:21149–21157

    Article  CAS  Google Scholar 

  • Mukhopadhyay R, Rosen BP, Phung LT, Silver S (2002) Microbial arsenic: from geocycles to genes and enzymes. FEMS Microbiol Rev 26:311–325

    Article  CAS  Google Scholar 

  • Nagvenkar GS, Ramaiah N (2010) Arsenite tolerance and biotransformation potential in estuarine bacteria. Ecotoxicol 19:604–613

    Article  CAS  Google Scholar 

  • Nair M, Joseph T, Balachandran KK, Nair KKC, Paimpillii JS (2003) Arsenic enrichment in estuarine sediments-impact of iron and manganese mining. Fate of arsenic in the environment. In: Ahmed, MF, Ali MA, Adeel Z (eds.) (Int. Symp. on Fate of Arsenic in the Environment, Dhaka; Bangladesh; Feb 2003). International Training Network (ITN), Dhaka, pp 57–67

  • Nemergut DR, Martin AP, Schmidt SK (2004) Integron diversity in heavy-metal contaminated mine tailings and inferences about integron evolution. Appl Environ Microbiol 70:1160–1168

    Article  CAS  Google Scholar 

  • Ng JC, Wang JP, Shraim A (2003) A global health problem caused by arsenic from natural sources. Chemosphere 52:1353–1359

    Article  CAS  Google Scholar 

  • Nordstrom DK (2002) Public health. Worldwide occurrences of arsenic in ground water. Science 296:2143–2145

    Article  CAS  Google Scholar 

  • Ordonez E, Letek M, Valbuena N, Gil JA, Mateos LM (2005) Analysis of genes involved in arsenic resistance in Corynebacterium glutamicum ATCC 13032. Appl Environ Microbiol 71:6206–6215

    Article  CAS  Google Scholar 

  • Oremland RS, Stolz JF (2003) The ecology of arsenic. Science 9:939–944

    Article  Google Scholar 

  • Oyetibo GO, Ilori MO, Adebusoye SA, Obayori OS, Amund OO (2010) Bacteria with dual resistance to elevated concentrations of heavy metals and antibiotics in Nigerian contaminated systems. Environ Monit Assess 168:305–314

    Article  CAS  Google Scholar 

  • Page RDM (1996) Tree view: an application to display phylogenetic tress on personal computers. Comp Appl Biosci 12:357–358

    CAS  Google Scholar 

  • Pepi M, Volterrani M, Renzi M, Marvasi M, Gasperini S, Franchi E, Focardi SE (2007) Arsenic-resistant bacteria isolated from contaminated sediments of the Orbetello Lagoon, Italy, and their characterization. J Appl Microbiol 103:2299–2308

    Article  CAS  Google Scholar 

  • Qin J, Rosen BP, Zhang Y, Wang G, Franke S, Rensing C (2006) Arsenic detoxification and evolution of trimethylarsine gas by a microbial arsenite S-adenyosylmethionine methyltransferase. Proc Natl Acad Sci USA 103:2075–2080

    Article  CAS  Google Scholar 

  • Rosen BP (2002) Biochemistry of arsenic detoxification. FEBS Lett 529:86–92

    Article  CAS  Google Scholar 

  • Rozen S, Skaletsky HJ (2000) Primer 3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365–386

    Google Scholar 

  • Saltikov CW, Olson BH (2002) Homology of Escherichia coli R773 arsA, arsB, and arsC genes in arsenic-resistant bacterial isolated from raw sewage and arsenic-enriched creek waters. Appl Environ Microbiol 68:280–288

    Article  CAS  Google Scholar 

  • Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York

    Google Scholar 

  • Sawkar K, Pvethamony Babu MT, Dias C, Mesquita A, Fernandes B, Moses S, Padmavati M, Naik S (2003) Measuring, modeling and grading the health of water bodies. Coastal tourism, environment, and sustainable local development, pp 179–210

  • Shi J, Vlamis-Gardikas A, Aslund F, Holmgren A, Rosen BP (1999) Reactivity of glutaredoxins 1, 2, and 3 from Escherichia coli shows that glutaredoxin 2 is the primary hydrogen donor to ArsC-catalyzed arsenate reduction. J Biol Chem 274:36039–36042

    Article  CAS  Google Scholar 

  • Stocker J, Balluch D, Gsell M, Harms H, Feliciano J, Daunert S, Malik KA, Meer VD (2003) Development of a set of simple bacterial biosensors for quantitative and rapid measurements of arsenite and arsenate in potable water. Environ Sci Technol 37:4743–4750

    Article  CAS  Google Scholar 

  • Suresh K, Prabagaran SR, Sengupta S, Shivaji S (2004) Bacillus indicus sp. nov., an arsenic-resistant bacterium isolated from an aquifer in West Bengal, India. Int J Syst Evol Microbiol 54:1369–1375

    Article  CAS  Google Scholar 

  • Suzuki K, Wakao N, Kimura T, Sakka K, Ohmiya K (1998) Expression and regulation of the arsenic resistance operon of Acidophilium multivorum AIU 301 plasmid pKW301 in Escherichia coli. Appl Environ Microbiol 64:411–418

    CAS  Google Scholar 

  • Villegas-Torres MF, Bedoya-Reina OC, Salazar C, Vives-Florez MJ, Dussan J (2011) Horizontal arsC gene transfer among microorganisms isolated from arsenic polluted soil. Int biodeter biodegr 65:147–152

    Article  CAS  Google Scholar 

  • Wang L, Chen S, Xiao X, Huang X, You D, Zhou X, Deng Z (2006) arsRBOCT Arsenic resistance system encoded by linear plasmid pHZ227 in Streptomyces sp. strain FR-008. Appl Environ Microbiol 72:3738–3742

    Article  CAS  Google Scholar 

  • Xu C, Zhou TQ, Kuroda M, Rosen BP (1998) Metalloid resistance mechanisms in prokaryotes. J Biochem 123:16–23

    CAS  Google Scholar 

  • Zingde MD, Singbal SYS, Moraes CP, Reddy CVG (1976) Arsenic, Cu, Zn and Mn in the marine flora and fauna of coastal and estuarine waters around Goa. Indian J Mar Sci 5:212–217

    CAS  Google Scholar 

Download references

Acknowledgments

M. Sri Lakshmi Sunita would like to thank Council of Scientific and Industrial Research—University Grants Commission, New Delhi for providing JRF and SRF fellowships. We gratefully acknowledge Dr. Rita Mukhopadhyay, Prof. B. P. Rosen, Wayne State University, Detroit, USA, for gifting E. coli arsC deletion strain WC3110. We also thank anonymous reviewers for their helpful and constructive comments on the manuscript. We are also thankful to the University Grants Commission and the Department of Biotechnology, New Delhi for the financial assistance in the form of DBT-OU-ISLARE program.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to P. B. Kavi Kishor.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Sri Lakshmi Sunita, M., Prashant, S., Bramha Chari, P.V. et al. Molecular identification of arsenic-resistant estuarine bacteria and characterization of their ars genotype. Ecotoxicology 21, 202–212 (2012). https://doi.org/10.1007/s10646-011-0779-x

Download citation

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10646-011-0779-x

Keywords

Navigation