Gill SR, Pop M, Deboy RT, et al. Metagenomic analysis of the human distal gut microbiome. Science. 2006;312:1355–1359.
PubMed
Article
CAS
Google Scholar
Hooper LV, Macpherson AJ. Immune adaptations that maintain homeostasis with the intestinal microbiota. Nat Rev Immunol. 2010;10:159–169.
PubMed
Article
CAS
Google Scholar
Hooper LV, Gordon JI. Commensal host-bacterial relationships in the gut. Science. 2001;292:1115–1118.
PubMed
Article
CAS
Google Scholar
Neish AS. Microbes in gastrointestinal health and disease. Gastroenterology. 2009;136:65–80.
PubMed
Article
Google Scholar
Bjorksten B, Sepp E, Julge K, et al. Allergy development and the intestinal microflora during the first year of life. J Allergy Clin Immunol.. 2001;108:516–520.
PubMed
Article
CAS
Google Scholar
Turnbaugh PJ, Ley RE, Mahowald MA, et al. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 2006;444:1027–1031.
PubMed
Article
Google Scholar
Rawls JF. Enteric infection and inflammation alter gut microbial ecology. Cell Host Microbe. 2007;22:73–74.
Article
Google Scholar
Matsuki T, Watanabe K, Fujimoto J, et al. Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces. Appl Environ Microbiol. 2004;70:7220–7228.
PubMed
Article
CAS
Google Scholar
Eckburg PB, Bik EM, Bernstein CN, et al. Diversity of the human intestinal microbial flora. Science. 2005;308:1635–1638.
PubMed
Article
Google Scholar
Zoetendal EG, Rajilic-Stojanovic M, de Vos WM. High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut. 2008;57:1605–1615.
PubMed
Article
CAS
Google Scholar
Ohara T, Yoshino K, Kitajima M. Possibility of preventing colorectal carcinogenesis with probiotics. Hepatogastroenterology. 2010;57:1411–1415.
PubMed
Google Scholar
Sobhani I, Tap J, Roudot-Thoraval F, et al. Microbial dysbiosis in colorectal cancer (CRC) patients. PLoS ONE. 2011;6:e16393.
PubMed
Article
CAS
Google Scholar
Scanlan PD, Shanahan F, Clune Y, et al. Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis. Environ Microbiol. 2008;10:789–798.
PubMed
Article
CAS
Google Scholar
Matsuda K, Tsuji H, Asahara T, et al. Sensitive quantitative detection of commensal bacteria by rRNA-targeted reverse transcription-PCR. Appl Environental Microbiol.. 2007;73:32–39.
Article
CAS
Google Scholar
Matsuda K, Tsuji H, Asahara T, et al. Establishment of an analytical system for the human fecal microbiota, based on reverse transcription-quantitative PCR targeting of multicopy rRNA molecules. Appl Environental Microbiol.. 2009;75:1961–1969.
Article
CAS
Google Scholar
Bird AR, Brown IL, Topping DL. Starches, resistant starches, the gut microflora and human health. Curr Issues Intest Microbiol.. 2000;1:25–37.
PubMed
CAS
Google Scholar
Wong JM, de Souza R, Kendall CW, et al. Colonic health: fermentation and short chain fatty acids. J Clin Gastroenterol. 2006;40:235–243.
PubMed
Article
CAS
Google Scholar
Tjalsma H, Scholler-Guinard M, Lasonder E, et al. Profiling the humoral immune response in colon cancer patients: diagnostic antigens from Streptococcus bovis. Int J Cancer. 2006;119:2127–2135.
PubMed
Article
CAS
Google Scholar
Ellmerich S, Djouder N, Scholler M, Klein JP. Production of cytokines by monocytes, epithelial and endothelial cells activated by Streptococcus bovis. Cytokine. 2000;12:26–31.
PubMed
Article
CAS
Google Scholar
Hill MJ, Drasar BS, Hawksworth G, et al. Bacteria and aetiology of cancer of large bowel. Lancet. 1971;1:95–100.
PubMed
Article
CAS
Google Scholar
Moore WE, Moore LH. Intestinal floras of populations that have a high risk of colon cancer. Appl Environ Microbiol. 1995;61:3202–3207.
PubMed
CAS
Google Scholar
Scheppach W. Effects of short chain fatty acids on gut morphology and function. Gut. 1994;35:S35–S38.
PubMed
Article
CAS
Google Scholar
Augenlicht LH, Mariadason JM, Wilson A, et al. Short chain fatty acids and colon cancer. J Nutr. 2002;132:3804S–3808S.
PubMed
Google Scholar
Fearon ER, Vogelstein B. A genetic model for colorectal tumorigenesis. Cell. 1990;61:759–767.
PubMed
Article
CAS
Google Scholar
Johnson IT, Lund EK. Review article: nutrition, obesity and colorectal cancer. Aliment Pharmacol Ther. 2007;26:161–181.
PubMed
Article
CAS
Google Scholar
Matsubara N. Epigenetic regulation and colorectal cancer. Dis Colon Rectum. 2012;55:96–104.
PubMed
Article
Google Scholar
Liu Z, Qin H, Yang Z, et al. Randomised clinical trial: the effects of perioperative probiotic treatment on barrier function and post-operative infectious complications in colorectal cancer surgery—a double-blind study. Aliment Pharmacol Ther. 2011;33:50–63.
PubMed
Article
CAS
Google Scholar
Gianotti L, Morelli L, Galbiati F, et al. A randomized double-blind trial on perioperative administration of probiotics in colorectal cancer patients. World J Gastroenterol. 2010;16:167–175.
PubMed
Article
CAS
Google Scholar
Worthley DL, Le Leu RK, Whitehall VL, et al. A human, double-blind, placebo-controlled, crossover trial of prebiotic, probiotic, and synbiotic supplementation: effects on luminal, inflammatory, epigenetic, and epithelial biomarkers of colorectal cancer. Am J Clin Nutr. 2009;90:578–586.
PubMed
Article
CAS
Google Scholar
Quintero E. Chemical or immunological tests for the detection of fecal occult blood in colorectal cancer screening? Gastroenterol Hepatol. 2009;32:565–576.
PubMed
Article
Google Scholar
Mueller S, Saunier K, Hanisch C, et al. Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study. Appl Environ Microbiol. 2006;72:1027–1033.
PubMed
Article
CAS
Google Scholar
Zhao L, Xu W, Ibrahim SA, et al. Effects of age and region on fecal microflora in elderly subjects living in Bama, Guangxi. China. Curr Microbiol.. 2011;62:64–70.
Article
CAS
Google Scholar
Cummings JH, Pomare EW, Branch WJ, et al. Short chain fatty acids in human large intestine, portal, hepatic and venous blood. Gut. 1987;28:1221–1227.
PubMed
Article
CAS
Google Scholar
Kikuchi H, Yamada T. Correlation between water-holding capacity of different types of cellulose in vitro and gastrointestinal retention time in vivo of rats. J Sci Food Agric. 1992;60:139–146.
Article
CAS
Google Scholar
Matsuki T. Development of quantitative PCR detection method with 16S rRNA gene-targeted genus- and species-specific primers for the analysis of human intestinal microflora and its application. Nippon Saikingaku Zasshi. 2007;62:255–261.
PubMed
Article
CAS
Google Scholar
Matsuki T, Watanabe K, Tanaka R, et al. Distribution of bifidobacterial species in human intestinal microflora examined with 16S rRNA-gene-targeted species-specific primers. Appl Environ Microbiol. 1999;65:4506–4512.
PubMed
CAS
Google Scholar
Matsuda K, Tsuji H, Asahara T, et al. Sensitive quantification of Clostridium difficile by reverse transcription—quantitative PCR (RT-qPCR) targeting rRNA molecules. Appl Environ Microbiol. 2012;78:5111–5118.
PubMed
Article
CAS
Google Scholar
Kikuchi E, Miyamoto Y, Narushima S, et al. Design of species-specific primers to identify 13 species of Clostridium harbored in human intestinal tracts. Microbiol Immunol. 2002;46:353–358.
PubMed
CAS
Google Scholar