Abstract
Surveying and quantifying the bushmeat crisis in Africa requires up-front, reliable species-level identification. We conducted a comprehensive survey of 31 trading places where bushmeat are sold in Côte d’Ivoire (West Africa) and two seizures from Europe, using a multi-gene DNA-typing approach and a dedicated species-assignment pipeline (DNAbushmeat). We identified 47 wild and five domestic species-level taxa from 348 collected carcasses, including mammals (15 Cetartiodactyla, 10 Rodentia, seven Carnivora, seven Primates, two Pholidota, two Lagomorpha, one Hyracoidea, one Chiroptera), reptiles (two Squamata), birds (one Bucerotiformes, one Galliformes, one Otidiformes) and fish (one Perciformes). Our DNA-based approach allowed the detection of two separate lineages of red-flanked duikers (Cephalophus rufilatus), a yet unreferenced cane rat (but possibly Thryonomys gregorianus) and two cryptic species of Gambian rat (Cricetomys). We also observed important levels of intraspecific diversity in several mammals and squamates, suggesting additional cryptic diversity within bushmeat species from Côte d’Ivoire. More than half of the bushmeat carcasses were inaccurately identified, with European customs peaking at 100% inaccuracy. Our study also explored the use of diversity indices among bushmeat markets to identify ‘hotspot’ market places where biodiversity would be the most impacted. Overall, 12 protected species (including pangolins, crocodiles, primates and antelopes) were impacted by the bushmeat trade in Côte d’Ivoire, indicating weak law enforcement related to game protection. We suggest that the recognition of the bushmeat sector by the state and its DNA-based surveillance is necessary to reach a sustainable management of the bushmeat trade in Côte d’Ivoire.
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Data availability
The nucleotide sequences used in this study are deposited in Genbank.
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Acknowledgements
KJG and SGB received funding from the Ministère de l’Enseignement Supérieur et de la Recherche Scientifique (MESRS) of Côte d’Ivoire, as part of the Debt Reduction-Development Contracts (C2Ds) managed by the Institut de Recherche pour le Développement (IRD). KJG received a grant through a PhD scholarship from "Appui à la Modernisation et à la Réforme des Universités et Grandes Ecoles de Côte d’Ivoire" (AMRUGE-CI_N°2). Field research and sampling was conducted under the authority of Ministère des Eaux et Forêts of Côte d'Ivoire, through Direction Générale des Forêts et de la Faune and Direction de la Faune et des Ressources Cynégétiques. PANGO-GO (ANR ANR-17-CE02-0001) and BUSHRISK (FCT IC&DT 02/SAICT/2017—n° 032130) supported the lab work. Investigations on the Brussels’ airport samples were supported by the Federal Public Service Health, Food Chain Safety and Environment of Brussels, Belgium (Cahier spécial des charges n° DG5/AMSZ/LF/16018). We are grateful to V. Benoît and L. Cervantes (Institut de Recherche Criminelle de la Gendarmerie Nationale, Cergy Pontoise, France) for the samples seized at Roissy airport. We thank the plateau Biologie Moléculaire et Microbiologie (B2M) at Laboratoire d’Evolution et Diversité Biologique, Toulouse, and the GenSeq platform of LabEx CeMEB (Centre Méditerranéen Environnement et Biodiversité), Montpellier for the technical facilities and support. Two reviewers significantly improved the quality of the early draft of the manuscript.
Funding
KJG and SGB received funding from the Ministère de l’Enseignement Supérieur et de la Recherche Scientifique (MESRS) of Côte d’Ivoire, as part of the Debt Reduction-Development Contracts (C2Ds) managed by the Institut de Recherche pour le Développement (IRD). KJG received a grant through a PhD scholarship from "Appui à la Modernisation et à la Réforme des Universités et Grandes Ecoles de Côte d’Ivoire" (AMRUGE-CI_N°2). Field research and sampling was conducted under the authority of Ministère des Eaux et Forêts of Côte d'Ivoire, through Direction Générale des Forêts et de la Faune and Direction de la Faune et des Ressources Cynégétiques. PANGO-GO (ANR ANR-17-CE02-0001) and BUSHRISK (FCT IC&DT 02/SAICT/2017—n° 032130) supported the lab work. Investigations on the Brussels’ airport samples were supported by the Federal Public Service Health, Food Chain Safety and Environment of Brussels, Belgium (Cahier spécial des charges n° DG5/AMSZ/LF/16018).
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Conception and design of the study: Sery Gonedelé Bi, Philippe Gaubert. Data collection: Koffi Jules Gossé, Sery Gonedelé Bi, Bamba Kramoko, Anne-Lise Chaber. Lab work: Koffi Jules Gossé, Sery Gonedelé Bi, Fabienne Justy, Philippe Gaubert. Data analysis: Koffi Jules Gossé, Sery Gonedelé Bi, Philippe Gaubert. Funding: Sery Gonedelé Bi, Anne-Lise Chaber, Philippe Gaubert. The first draft of the manuscript was written by Koffi Jules Gossé, Sery Gonedelé Bi and Philippe Gaubert. All authors commented on the final draft of the manuscript.
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Gossé, K.J., Gonedelé-Bi, S., Justy, F. et al. DNA-typing surveillance of the bushmeat in Côte d'Ivoire: a multi-faceted tool for wildlife trade management in West Africa. Conserv Genet 23, 1073–1088 (2022). https://doi.org/10.1007/s10592-022-01474-2
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DOI: https://doi.org/10.1007/s10592-022-01474-2