The conservation utility of mitochondrial genetic diversity in macrogenetic research

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References

  1. Allio R, Donega S, Galtier N, Nabholz B (2017) Large variation in the ratio of mitochondrial to nuclear mutation rate across animals: implications for genetic diversity and the use of mitochondrial DNA as a molecular marker. Mol Biol Evol 34(11):2762–2772. https://doi.org/10.1093/molbev/msx197

    CAS  Article  PubMed  Google Scholar 

  2. Ballard JWO, Whitlock MC (2004) The incomplete natural history of mitochondria. Mol Ecol 13(4):729–744. https://doi.org/10.1046/j.1365-294X.2003.02063.x

    Article  PubMed  Google Scholar 

  3. Bazin E, Glémin S, Galtier N (2006) Population size does not influence mitochondrial genetic diversity in animals. Science 312(5773):570–572. https://doi.org/10.1126/science.1122033

    CAS  Article  Google Scholar 

  4. Blanchet S, Prunier JG, De Kort H (2017) Time to go bigger: emerging patterns in macrogenetics. Trends Genet 33(9):579–580. https://doi.org/10.1016/j.tig.2017.06.007

    CAS  Article  PubMed  Google Scholar 

  5. Bohonak AJ, Vandergast AG (2011) The value of DNA sequence data for studying landscape genetics. Mol Ecol 20(12):2477–2479. https://doi.org/10.1111/j.1365-294X.2011.05122.x

    Article  PubMed  Google Scholar 

  6. CBD and UNEP (2010) Strategic plan for biodiversity 2011–2020 and the Aichi targets

  7. Currie DJ (1991) Energy and large-scale patterns of animal- and plant-species richness. Am Nat 137(1):27–49

    Article  Google Scholar 

  8. DeBalsi KL, Hoff KE, Copeland WC (2017) Role of the mitochondrial DNA replication machinery in mitochondrial DNA mutagenesis, aging and age-related diseases. Ageing Res Rev 33:89–104. https://doi.org/10.1016/j.arr.2016.04.006

    CAS  Article  PubMed  Google Scholar 

  9. DiBattista JD (2008) Patterns of genetic variation in anthropogenically impacted populations. Conserv Genet 9(1):141–156. https://doi.org/10.1007/s10592-007-9317-z

    Article  Google Scholar 

  10. Edwards S, Bensch S (2009) Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008. Mol Ecol 18:2930–2933

    CAS  Article  Google Scholar 

  11. Falconer DS, Mackay TFC (1996) Introduction to quantitative genetics, 4th edn. Longman, Harlow

  12. Fisher RA (1930) The genetical theory of natural selection. Oxford University Press, Oxford

    Book  Google Scholar 

  13. Frankham R (1996) Relationship of genetic variation to population size in wildlife. Conserv Biol 10(6):1500–1508. https://doi.org/10.1046/j.1523-1739.1996.10061500.x

    Article  Google Scholar 

  14. Galtier N, Jobson RW, Nabholz B, Glémin S, Blier PU (2009a) Mitochondrial whims: metabolic rate, longevity and the rate of molecular evolution. Biol Lett 5(3):413–416. https://doi.org/10.1098/rsbl.2008.0662

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  15. Galtier N, Nabholz B, Glémin S, Hurst GDD (2009b) Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Mol Ecol 18(22):4541–4550. https://doi.org/10.1111/j.1365-294X.2009.04380.x

    CAS  Article  PubMed  Google Scholar 

  16. Hoban S, Bruford M, D’Urban Jackson J, Lopes-Fernandes M, Heuertz M, Hohenlohe PA, Paz-Vinas I, Sjögren-Gulve P, Segelbacher G, Vernesi C, Aitken S, Bertola LD, Bloomer P, Breed M, Rodríguez-Correa H, Funk WC, Grueber CE, Hunter ME, Jaffe R, Liggins L, Mergeay J, Moharrek F, O’Brien D, Ogden R, Palma-Silva C, Pierson J, Ramakrishnan U, Simo-Droissart M, Tani N, Waits L, Laikre L (2020) Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved. Biol Conserv 248:108654. https://doi.org/10.1016/j.biocon.2020.108654

    Article  Google Scholar 

  17. Hoffmann S, Spitkovsky D, Radicella JP, Epe B, Wiesner RJ (2004) Reactive oxygen species derived from the mitochondrial respiratory chain are not responsible for the basal levels of oxidative base modifications observed in nuclear DNA of mammalian cells. Free Radic Biol Med 36(6):765–773. https://doi.org/10.1016/j.freeradbiomed.2003.12.019

    CAS  Article  PubMed  Google Scholar 

  18. James J, Eyre-Walker A (2020) Mitochondrial DNA sequence diversity in mammals: a correlation between the effective and census population sizes. Genome Biol Evol. https://doi.org/10.1093/gbe/evaa222

    Article  PubMed  PubMed Central  Google Scholar 

  19. Johnson MTJ, Munshi-South J (2017) Evolution of life in urban environments. Science 358(6363):eaam8327. https://doi.org/10.1126/science.aam8327

    CAS  Article  PubMed  Google Scholar 

  20. Lanfear R, Thomas JA, Welch JJ, Brey T, Bromham L (2007) Metabolic rate does not calibrate the molecular clock. Proc Natl Acad Sci USA 104(39):15388–15393. https://doi.org/10.1073/pnas.0703359104

    Article  PubMed  Google Scholar 

  21. Lawrence ER, Fraser DJ (2020) Latitudinal biodiversity gradients at three levels: linking species richness, population richness and genetic diversity. Glob Ecol Biogeogr. https://doi.org/10.1111/geb.13075

    Article  Google Scholar 

  22. Leigh DM, Hendry AP, Vázquez-Domínguez E, Friesen VL (2019) Estimated six per cent loss of genetic variation in wild populations since the industrial revolution. Evol Appl 12(8):1505–1512. https://doi.org/10.1111/eva.12810

    Article  PubMed  PubMed Central  Google Scholar 

  23. Li H, Xiang-Yu J, Dai G, Gu Z, Ming C, Yang Z, Ryder OA, Li WH, Fu YX, Zhang YP (2016) Large numbers of vertebrates began rapid population decline in the late 19th century. Proc Natl Acad Sci USA 113(49):14079–14084. https://doi.org/10.1073/pnas.1616804113

    CAS  Article  PubMed  Google Scholar 

  24. Loveless M, Hamrick J (1984) Ecological determinants of genetic structure in plant populations. Annu Rev Ecol Syst 51:65–95

    Article  Google Scholar 

  25. Manel S, Guerin PE, Mouillot D, Blanchet S, Velez L, Albouy C, Pellissier L (2020) Global determinants of freshwater and marine fish genetic diversity. Nat Commun 11(1):1–9. https://doi.org/10.1038/s41467-020-14409-7

    CAS  Article  Google Scholar 

  26. Millette KL, Fugère V, Debyser C, Greiner A, Chain FJJ, Gonzalez A (2020) No consistent effects of humans on animal genetic diversity worldwide. Ecol Lett 23(1):55–67. https://doi.org/10.1111/ele.13394

    Article  PubMed  Google Scholar 

  27. Miraldo A, Li S, Borregaard MK, Florez-Rodriguez A, Gopalakrishnan S, Rizvanovic M, Wang Z, Rahbek C, Marske KA, Nogues-Bravo D (2016) An Anthropocene map of genetic diversity. Science 353(6307):1532–1535. https://doi.org/10.1126/science.aaf4381

    CAS  Article  PubMed  Google Scholar 

  28. Mittelbach GG, Schemske DW, Cornell HV, Allen AP, Brown JM, Bush MB, Harrison SP, Hurlbert AH, Knowlton N, Lessios HA, McCain CM, McCune AR, McDade LA, McPeek MA, Near TJ, Price TD, Ricklefs RE, Roy K, Sax DF, Schluter D, Sobel JM, Turelli M (2007) Evolution and the latitudinal diversity gradient: speciation, extinction and biogeography. Ecol Lett 10(4):315–331. https://doi.org/10.1111/j.1461-0248.2007.01020.x

    Article  PubMed  Google Scholar 

  29. Mittell EA, Nakagawa S, Hadfield JD (2015) Are molecular markers useful predictors of adaptive potential? Ecol Lett 18(8):772–778. https://doi.org/10.1111/ele.12454

    Article  PubMed  Google Scholar 

  30. Nabholz B, Glémin S, Galtier N (2008a) Strong variations of mitochondrial mutation rate across mammals—the longevity hypothesis. Mol Biol Evol 25(1):120–130. https://doi.org/10.1093/molbev/msm248

    CAS  Article  PubMed  Google Scholar 

  31. Nabholz B, Mauffrey JF, Bazin E, Galtier N, Glemin S (2008b) Determination of mitochondrial genetic diversity in mammals. Genetics 178(1):351–361. https://doi.org/10.1534/genetics.107.073346

    Article  PubMed  PubMed Central  Google Scholar 

  32. Nevo E, Beiles A, Ben-Shlomo R (1984) The evolutionary significance of genetic diversity: ecological, demographic, and life history correlates. In: Mani GS (ed) Lecture Notes in Biomathematics vol 53, evolutionary dynamics of genetic diversity. Springer, Berlin, pp 13–213. https://doi.org/10.1007/978-3-642-51588-0

    Chapter  Google Scholar 

  33. Pontarp M, Bunnefeld L, Cabral JS, Etienne RS, Fritz SA, Gillespie R, Graham CH, Hagen O, Hartig F, Huang S, Jansson R, Maliet O, Münkemüller T, Pellissier L, Rangel TF, Storch D, Wiegand T, Hurlbert AH (2019) The latitudinal diversity gradient: novel understanding through mechanistic eco-evolutionary models. Trends Ecol Evol 34(3):211–223. https://doi.org/10.1016/j.tree.2018.11.009

    Article  PubMed  Google Scholar 

  34. Rubinoff D, Holland BS (2005) Between two extremes: mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference. Syst Biol 54(6):952–961. https://doi.org/10.1080/10635150500234674

    Article  PubMed  Google Scholar 

  35. Schmidt C, Domaratzki M, Kinnunen RP, Bowman J, Garroway CJ (2020a) Continent-wide effects of urbanization on bird and mammal genetic diversity. Proc R Soc B Biol Sci 287(1920):20192497. https://doi.org/10.1098/rspb.2019.2497

    CAS  Article  Google Scholar 

  36. Schmidt C, Dray S, Garroway CJ (2020b) Genetic and species-level biodiversity patterns are linked by demography and ecological opportunity. bioRxiv. https://doi.org/10.1101/2020.06.03.132092

    Article  PubMed  PubMed Central  Google Scholar 

  37. Soulé ME (1976) In: Ayala FJ (ed) Allozyme variation, its determinants in space and time. Sinauer Associates, Sunderland, Massachusetts. pp. 60–77

  38. Stearns SC (1992) The evolution of life histories. Oxford University Press, New York

    Google Scholar 

  39. Theodoridis S, Fordham DA, Brown SC, Li S, Rahbek C, Nogues-Bravo D (2020) Evolutionary history and past climate change shape the distribution of genetic diversity in terrestrial mammals. Nat Commun 11(1):2557. https://doi.org/10.1038/s41467-020-16449-5

    CAS  Article  PubMed  PubMed Central  Google Scholar 

  40. Zink RM, Barrowclough GF (2008) Mitochondrial DNA under siege in avian phylogeography. Mol Ecol 17(9):2107–2121. https://doi.org/10.1111/j.1365-294X.2008.03737.x

    CAS  Article  PubMed  Google Scholar 

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Funding

C.S. and C.J.G. were supported by a Natural Sciences and Engineering Research Council of Canada Discovery Grant to C.J.G. C.S. was also supported by a U. Manitoba Graduate Fellowship, and a U. Manitoba Graduate Enhancement of Tri-council funding grant to C.J.G.

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C.S. and C.J.G. wrote the manuscript.

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Correspondence to Chloé Schmidt or Colin J. Garroway.

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Schmidt, C., Garroway, C.J. The conservation utility of mitochondrial genetic diversity in macrogenetic research. Conserv Genet 22, 323–327 (2021). https://doi.org/10.1007/s10592-021-01333-6

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