Albert EM, Arroyo JM, Godoy JA (2010) Isolation and characterization of microsatellite loci for the endangered Midwife Betic toad Alytes dickhilleni (Discoglossidae). Cons Genet Resour 3:251–253
Article
Google Scholar
Alexandrino J, Froufe E, Arntzen JW, Ferrand N (2000) Genetic subdivision, glacial refugia and postglacial recolonization in the golden-striped salamander, Chioglossa lusitanica (Amphibia: Urodela). Mol Ecol 9:771–781
Article
CAS
PubMed
Google Scholar
Andersen LW, Fog K, Damgaard C (2004) Habitat fragmentation causes bottlenecks and inbreeding in the European tree frog (Hyla arborea). Proc R Soc Lond B 271:1293–1302
Article
Google Scholar
Araújo MB, Thuiller W, Pearson RG (2006) Climate warming and the decline of amphibians and reptiles in Europe. J Biogeogr 33:1712–1728
Article
Google Scholar
Arévalo E, Davis SK, Sites JW Jr (1994) Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. Syst Biol 43:387–418
Article
Google Scholar
Arntzen JW, García-París M (1995) Morphological and allozyme studies of midwife toads (genus Alytes) including the description of two new taxa from Spain. Contrib Zool 65:5–34
Google Scholar
Bandelt HJ, Forster P, Rohl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37–48
Article
CAS
PubMed
Google Scholar
Barrett RDH, Schluter D (2008) Adaptation from standing genetic variation. Trends Ecol Evol 23:38–44
Article
PubMed
Google Scholar
Beebee TJC (2005) Conservation genetics of amphibians. Heredity 95:423–427
Article
CAS
PubMed
Google Scholar
Beebee TJC, Griffiths RA (2005) The amphibian decline crisis: a watershed for conservation biology? Biol Conserv 125:271–285
Article
Google Scholar
Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (2004) genetix 4.05, Population genetics software for Windows TM. Université de Montpellier II. Montpellier
Bosch J, González-Miras E (2012) Seguimiento de Alytes dickhilleni: informe final. Monografías SARE. Asociación Herpetológica Española, Ministerio de Agricultura, Alimentación y Medio Ambiente. Madrid
Bosch J, García-Alonso D, Fernández-Beaskoetxea S, Fisher MC, Garner TWJ (2013) Evidence for the introduction of lethal chytridiomycosis affecting wild betic midwife toads (Alytes dickhilleni). EcoHealth 10:82–89
Article
PubMed
Google Scholar
Burns EL, Crayn DM (2006) Phylogenetics and evolution of bell frogs (Litoria aurea species-group, Anura: Hylidae) based on mitochondrial ND4 sequences. Mol Phylogenet Evol 39:573–579
Article
CAS
PubMed
Google Scholar
Canestrelli D, Verardi A, Nascetti G (2007) Genetic differentiation and history of populations of the Italian treefrog Hyla intermedia: lack of concordance between mitochondrial and nuclear markers. Genetica 130:241–255
Article
PubMed
Google Scholar
Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Am J Hum Genet 19:233–257
PubMed Central
CAS
PubMed
Google Scholar
Chapuis M-P, Estoup A (2007) Microsatellite null alleles and estimation of population differentiation. Mol Biol Evol 24:621–631
Article
CAS
PubMed
Google Scholar
Chen C, Hill JK, Ohlemüller R, Roy DB, Thomas CD (2011) Rapid range shifts of species associated with high levels of climate warming. Science 333:1024–1026
Article
CAS
PubMed
Google Scholar
Chiucchi JE, Gibbs HL (2010) Similarity of contemporary and historical gene flow among highly fragmented populations of an endangered rattlesnake. Mol Ecol 19:5345–5358
Article
PubMed
Google Scholar
Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001–2014
PubMed Central
CAS
PubMed
Google Scholar
Crawford AJ (2003) Relative rates of nucleotide substitution in frogs. J Mol Evol 57:636–641
Article
CAS
PubMed
Google Scholar
Crawford NG (2010) smogd: software for the measurement of genetic diversity. Mol Ecol Resour 10:556–557
Article
PubMed
Google Scholar
Dieringer D, Schlštterer C (2003) microsatellite
analiser (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes 3:167–169
Article
CAS
Google Scholar
Drummond AJ, Rambaut A (2007) beast: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:214–221
Article
PubMed Central
PubMed
Google Scholar
Drummond AJ, Rambaut A, Shapiro B, Pybus OG (2005) Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22:1185–1192
Article
CAS
PubMed
Google Scholar
Earl DA, von Holddt BM (2011) structure
harvester: a website and program for visualizing Structure output and implement the Evanno method. Cons Genet Resour 4:359–361
Article
Google Scholar
Emaresi G, Pellet J, Dubey S, Hirzel AH, Fumagalli L (2011) Landscape genetics of the Alpine newt (Mesotriton alpestris) inferred from a strip-based approach. Conserv Genet 12:41–50
Article
Google Scholar
Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14:2611–2620
Article
CAS
PubMed
Google Scholar
Evans SR, Sheldon BC (2008) Interspecific patterns of genetic diversity in birds: correlations with extinction risk. Conserv Biol 22:1016–1025
Article
PubMed
Google Scholar
Ewers RM, Didham RK (2006) Confounding factors in the detection of species responses to habitat fragmentation. Biol Rev 81:117–142
Article
PubMed
Google Scholar
Felsenstein J (2010) phylip (Phylogeny Inference Package) version 3.69, University of Washington, Seattle
Frankham R, Ballou JD, Briscoe DA (2009) Introduction to conservation genetics, 2nd edn. Cambridge University Press, Cambridge
Google Scholar
Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915–925
PubMed Central
CAS
PubMed
Google Scholar
Funk WC, Blouin MS, Corn PS, Maxell BA, Pilliod DS, Amish S, Allendorf F (2005a) Population structure of Columbia spotted frogs (Rana luteiventris) is strongly affected by the landscape. Mol Ecol 14:483–496
Article
CAS
PubMed
Google Scholar
Funk WC, Greene AE, Corn PS, Allendorf FW (2005b) High dispersal in a frog species suggests that it is vulnerable to habitat fragmentation. Biol Lett 1:13–16
Article
PubMed Central
PubMed
Google Scholar
Gao X, Giorgi F (2008) Increased aridity in the Mediterranean region under greenhouse gas forcing estimated from high resolution simulations with a regional climate model. Global Planet Change 62:195–209
Article
Google Scholar
García-París M (2000) Alytes (Alytes) dickhilleni. In: Ramos MA et al (eds) Fauna Ibérica, vol 24., Museo Nacional de Ciencias NaturalesCSIC, Madrid, pp 288–293
Google Scholar
García-París M, Arntzen JW (2002) Alytes dickhilleni (Arntzen and García-París 1995). In: Pleguezuelos JM, Márquez R, Lizana M (eds) Atlas y Libro Rojo de los Anfibios y Reptiles de España, Dirección General de Conservación de la Naturaleza, Asociación Herpetológica Española, Madrid, pp 76–78
Garza JC, Williamson EG (2001) Detection of reduction in population size using data from microsatellite loci. Mol Ecol 10:305–318
Article
CAS
PubMed
Google Scholar
Giordano AR, Ridenhour BJ, Storfer A (2007) The influence of altitude and topography on genetic structure in the long-toed salamander (Ambystoma macrodactulym). Mol Ecol 16:1625–1637
Article
CAS
PubMed
Google Scholar
Gonçalves H, Martínez-Solano I, Ferrand N, García-París M (2007) Conflicting phylogenetic signal of nuclear vs mitochondrial DNA markers in midwife toads (Anura, Discoglossidae, Alytes): deep coalescence or ancestral hybridization? Mol Phylogenet Evol 44:494–500
Gonçalves H, Martínez-Solano I, Pereira R, Carvalho B, García-París M, Ferrand N (2009) High levels of population subdivision in a morphologically conserved mediterranean toad (Alytes cisternasii) result from recent, multiple refugia: evidence from mtDNA, microsatellites and nuclear genealogies. Mol Ecol 18:5143–5160
Article
PubMed
Google Scholar
Goudet J (2002) fstat, a program to estimate and test gene diversities and fixation indices (version 2.9.3.2). Available from http://www2.unil.ch/popgen/softwares/fstat.htm
Guindon S, Gascuel O (2003) A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Syst Biol 52:696–704
Article
PubMed
Google Scholar
Hof C, Araújo MB, Jetz W, Rahbek C (2011) Additive threats from pathogens, climate and land-use change for global amphibian diversity. Nature 480:516–519
CAS
PubMed
Google Scholar
Holleley CE, Geerts PG (2009) Multiplex manager 1.0: a crossplatform computer program that plans and optimizes multiplex PCR. Biotechniques 46:511–517
Article
CAS
PubMed
Google Scholar
IPCC (2014) Summary for policymakers. In: Climate change 2014: impacts, adaptation, and vulnerability. Part A: global and sectoral aspects. Contribution of working group II to the fifth assessment report of the intergovernmental panel on climate change (eds Field CB et al) Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, pp. 1–32.
Jakobsson M, Rosenberg NA (2007) clumpp: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23:1801–1806
Article
CAS
PubMed
Google Scholar
Johansson M, Primmer CR, Sahlsten J, Merilä J (2005) The influence of landscape structure on occurrence, abundance and genetic diversity of the common frog, Rana temporaria. Glob Change Biol 11:1664–1679
Article
Google Scholar
Johansson M, Primmer CR, Merilä J (2006) History vs. current demography: explaining the genetic population structure of the common frog (Rana temporaria). Mol Ecol 15:975–983
Article
CAS
PubMed
Google Scholar
Jost L (2008) Gst and its relatives do not measure differentiation. Mol Ecol 17:4015–4026
Article
PubMed
Google Scholar
Keller LF, Waller DM (2002) Inbreeding effects in wild populations. Trends Ecol Evol 17:230–241
Article
Google Scholar
Kraaijeveld-Smit FJL, Beebee TJC, Griffiths RA, Moore RD, Schley L (2005) Low gene flow but high genetic diversity in the threatened Mallorcan midwife toad Alytes muletensis. Mol Ecol 14:3303–3315
Article
Google Scholar
Krijgsman W, Hilgen FJ, Raffi I, Sierro FJ, Wilson DS (1999) Chronology, causes and progression of the Messinian salinity crisis. Nature 400:652–655
Article
CAS
Google Scholar
Kuntner M, Năpăruş M, Li D, Coddington JA (2014) Phylogeny predicts future habitat shifts due to climate change. PLoS ONE 9(6):e98907. doi:10.1371/journal.pone.0098907
Article
PubMed Central
PubMed
Google Scholar
Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–1452
Article
CAS
PubMed
Google Scholar
Luikart G, Cornuet JM (1998) Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv Biol 12:228–237
Article
Google Scholar
Luikart G, Allendorf FW, Cornuet JM, Sherwin WB (1998) Distortion of allele frequency distributions provides a test for recent population bottlenecks. J Hered 89:238–247
Article
CAS
PubMed
Google Scholar
MAGRAMA (2012) Inventario Español de Especies Terrestres. Inventario Español del Patrimonio Natural y de la Biodiversidad. Ministerio de Agricultura, Alimentación y Medio Ambiente. http://www.magrama.es/es/biodiversidad/temas/inventarios-nacionales/inventario-especies-terrestres/inventario-nacional-de-biodiversidad/default.aspx
Maia-Carvalho B, Gonçalves H, Ferrand N, Martínez-Solano I (2014a) Multilocus assessment of phylogenetic relationships in Alytes (Anura, Alytidae). Mol Phylogenet Evol DOI: 10.1016/j.ympev.2014.05.033
Maia-Carvalho B, Gonçalves H, Martínez-Solano I, Gutiérrez-Rodríguez J, Lopes S, Ferrand N, Sequeira F (2014b) Intraspecific genetic variation in the common midwife toad (Alytes obstetricans): subspecies assignment using mitochondrial and microsatellite markers. J Zool Syst Evol Res 52:170–175
Article
Google Scholar
Manel S, Holderegger R (2013) Ten years of landscape genetics. Trends Ecol Evol 28:614–621
Article
PubMed
Google Scholar
Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209–220
CAS
PubMed
Google Scholar
Martínez-Solano I, González EG (2008) Patterns of gene flow and source-sink dynamics in high altitude populations of the common toad Bufo bufo (Anura: Bufonidae). Biol J Linn Soc 95:824–839
Article
Google Scholar
Martínez-Solano I, París M, Izquierdo E, García-París M (2003) Larval growth plasticity in wild populations of the betic midwife toad, Alytes dickhilleni (Anura: Discogloddidae). Herpetol J 13:89–94
Google Scholar
Martínez-Solano I, Rey I, García-París M (2005) The impact of historical and recent factors on genetic variability in a mountain frog: the case of Rana iberica (Anura: Ranidae). Anim Conserv 8:431–441
Article
Google Scholar
Milá B, Carranza S, Guillaume O, Clobert J (2010) Marked genetic structuring and extreme dispersal limitation in Pyrenean brook newt Calotriton asper (Amphibia: Salamandridae) revealed by genome- wide AFLP but not mtDNA. Mol Ecol 19:108–120
Article
PubMed
Google Scholar
Miller M (2005) Alleles In Space (AIS): computer software for the joint analysis of interindividual spatial and genetic information. J Hered 96:722–724
Article
CAS
PubMed
Google Scholar
Molecular Ecology Resources Primer Development Consortium et al (2011) Permanent genetic resources added to molecular ecology resources database december 2010–2031 January 2011: isolation and characterization of 13 highly polymorphic microsatellite loci in the Betic midwife toad Alytes dickhilleni. Mol Ecol Resour 11:586–589
Article
Google Scholar
Monsen KJ, Blouin M (2003) Genetic structure in a montane ranid frog: restricted gene flow and nuclear–mitochondrial discordance. Mol Ecol 12:3275–3286
Article
CAS
PubMed
Google Scholar
Noël S, Ouellet M, Galois P, Lapointe F-L (2007) Impact of urban fragmentation on the genetic structure of the eastern red-backed salamander. Conserv Genet 8:599–606
Article
Google Scholar
Opdam P, Wascher D (2004) Climate change meets habitat fragmentation: linking landscape and biogeographical scale levels in research and conservation. Biol Conserv 117:285–297
Article
Google Scholar
Palumbi SR (2001) Humans as the world’s greatest evolutionary force. Science 293:1786–1790
Article
CAS
PubMed
Google Scholar
Parmesan C, Yohe G (2003) A globally coherent fingerprint of climate change impacts across natural systems. Nature 421:37–42
Article
CAS
PubMed
Google Scholar
Peery MZ, Kirby R, Reid BN, Stoelting R, Doucet-Bëer E, Robinson S, Vásquez-Carrillo C, Pauli JN, Palsbøll PJ (2012) Reliability of genetic bottleneck tests for detecting recent population declines. Mol Ecol 21: 3403–3418
Piry S, Luikart G, Cornuet JM (1999) bottleneck: a computer program for detecting recent reduction in the effective population size using allele frequency data. J Hered 90:502–503
Article
Google Scholar
Posada D (2008) jmodeltest: phylogenetic model averaging. Mol Biol Evol 25:1253–1256
Article
CAS
PubMed
Google Scholar
Pounds JA, Bustamente MR, Coloma LA, Consuegra JA, Fogden MPL et al (2006) Widespread amphibian extinctions from epidemic disease driven by global warming. Nature 439:161–167
Article
CAS
PubMed
Google Scholar
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959
PubMed Central
CAS
PubMed
Google Scholar
Purrenhage JL, Niewiarowski PH, Moore FB-G (2009) Population structure of spotted salamanders (Ambystoma maculatum) in a fragmented landscape. Mol Ecol 18:235–247
Article
CAS
PubMed
Google Scholar
Rambaut A, Drummond AJ (2009) tracer version 1.5, Available from http://beast.bio.ed.ac.uk/Tracer, Accessed at May 2012
Ramos-Onsins SE, Rozas J (2002) Statistical properties of new neutrality tests against population growth. Mol Biol Evol 19:2092–2100
Article
CAS
PubMed
Google Scholar
Raymond M, Rousset F (1995) genepop (Version 1.2): a population genetics software for exact tests and ecumenicism. J Hered 86:248–249
Google Scholar
Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223–225
Article
Google Scholar
Rödder D, Kielgast J, Bielby J, Schmidtlein S, Bosch J, Garner TJW, Veith M, Walker S, Fisher MC, Lötters S (2009) Global amphibian extinction risk assessment for the panzootic chytrid fungus. Diversity 1: 52–66
Rodríguez-Puebla C, Encinas AH, García-Casado LA, Nieto S (2010) Trends in warm days and cold nights over the Iberian Peninsula: relationships to large-scale variables. Clim Change 100:667–684
Article
Google Scholar
Román A (2002) Alytes muletensis (Sanchiz y Adrover, 1979). Atlas y Libro Rojo de los Anfibios y Reptiles de España (eds Pleguezuelos JM, Márquez R, Lizana M), Dirección General de Conservación de la Naturaleza, Asociación Herpetológica Española, Madrid, pp. 79–81
Slatkin M (1987) Gene flow and the geographic structure of natural populations. Science 236:787–792
Article
CAS
PubMed
Google Scholar
Smith AL, Gardner MG, Fenner AL, Bull CM (2009) Restricted gene flow in the endangered pygmy bluetongue lizard (Tiliqua adelaidensis) in a fragmented agricultural landscape. Wildl Res 36:466–478
Article
Google Scholar
Spear SF, Peterson CR, Matocq MD, Storfer A (2005) Landscape genetics of the blotched tiger salamander (Ambystoma tigrinum melanostictum). Mol Ecol 14:2553–2564
Article
CAS
PubMed
Google Scholar
Stuart SN, Chanson JS, Cox NA, Young BE, Rodrigues ASL, Fischman DL, Waller RW (2004) Status and trends of amphibian declines and extinctions worldwide. Science 306:1783–1785
Article
CAS
PubMed
Google Scholar
Tajima F (1989) Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585–595
PubMed Central
CAS
PubMed
Google Scholar
Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526
CAS
PubMed
Google Scholar
Thomas CD, Franco AMA, Hill JK (2006) Range retractions and extinction in the face of climate warming. Trends Ecol Evol 21:415–416
Article
PubMed
Google Scholar
van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538
Article
Google Scholar
Wasserman TN, Cushman SA, Littell JS, Shirk AJ, Landguth EL (2013) Population connectivity and genetic diversity of American marten (Martes americana) in the United States northern Rocky Mountains in a climate change context. Conserv Genet 14:529–541
Article
Google Scholar
Weir BS (1996) Genetic data analysis II. Sinauer Associates, Sunderland, Mass
Google Scholar
Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of populations structure. Evolution 38:1358–1370
Article
Google Scholar
Wilson GA, Rannala B (2003) Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163:1177–1191
PubMed Central
PubMed
Google Scholar