Abstract
The mudskipper Boleophthalmus pectinirostris is an important aquaculture species in China. It is endangered due to the loss and fragmentation of natural habitat, seawater pollution and overfishing. In this study, ten polymorphic microsatellite loci were isolated by the 5′-anchored polymerase chain reaction technique. Population genetic parameters were estimated on 60 wild individuals collected from Jiuduansha wetland in Yangtze River estuary. The number of alleles ranged from 3 to 14. The observed(H O) and expected(H E) heterozygosities ranged from 0.2500 to 0.8500 and from 0.3679 to 0.8692, respectively. This suite of microsatellite loci will facilitate future studies of the genetic status of wild and hatchery bred populations of B. pectinirostris.
Explore related subjects
Discover the latest articles and news from researchers in related subjects, suggested using machine learning.References
Akihito SK, Ikeda Y, Iwata A (2000) Suborder gobioidei. In: Nakabo T (ed) Fishes of Japan with pictorial keys to the species. Tokai University Press, Tokyo, pp 1139–1628 (in Japanese)
Brachet S, Jubier MF, Richard M, Jung-Muller B, Frascaria-Lacoste N (1999) Rapid identification of microsatellite loci using 5′-anchored PCR in the common ash Fraxinus excelsior. Mol Ecol 8:157–168
Excoffier L, Laval G, Schneider S (2005) ARLEQUIN (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50
Fisher PJ, Gardner RC, Richardson TE (1996) Single locus microsatellites isolated using 5′-anchored PCR. Nucleic Acids Res 24:4369–4371. doi:10.1093/nar/24.21.4369
Jin CH, Zhong AH, Huang FY, Zhang CD, Li MY (2004) The research on genetic diversity of Boleophthalmus pectinirostris L. from natural population by RAPD method. Mar Sci 12:26–30
Kanemori Y, Takegaki T, Natsukari Y (2006) Genetic population structure of Boleophthalmus pectinirostris inferred from mitochondrial DNA sequences. Jpn J Ichthyol 53:133–141
Liu ZZ, Yang JQ, Wang ZQ, Tang WQ (2009) Genetic structure and population history of Boleophthalmus pectinirostris in Yangtze River Estuary and its southern adjacent regions. Zool Res 1:1–10
Murdy EO (1989) A taxonomic revision and cladistic analysis of the oxudercine gobies (Gobiaidae: Oxudercinae). Rec Aust Mus Suppl 11:1–93
O’Connell M, Wright M (1997) Microsatellite DNA in fishes. Rev Fish Biol Fish 7:331–363. doi:10.1023/A:1018443912945
Provan J, Wilson PJ (2007) Development of microsatellites for the peat moss Sphagnum capillifolium using ISSR cloning. Mol Ecol Notes 7:254–256. doi:10.1111/j.1471-8286.2006.01572.x
Rice WR (1989) Analyzing tables of statistical tests. Evol Int J Org Evol 43:223–225. doi:10.2307/2409177
Rozen S, Skaletsky HJ (2000) Primer 3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, pp 365–386
Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York
Zhang QY, Hong WS (2006) Review and prospect of mudskipper Boleophthalmus pectinirostris studies. J Xiamen Univ (Natural Science) Sup 2:97–108
Acknowledgments
We are grateful to Ms. Sang-Ni Lu, Mr. Ding He, Ms. Qi Ding, Mr. Qing-Hui Meng and Mr. Wei Feng for the help in lab work. This research was supported by the grants from Shanghai Leading Academic Discipline Project (S30701, Y1101).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Tang, SJ., Liu, ZZ., Tang, WQ. et al. A simple method for isolation of microsatellites from the mudskipper (Boleophthalmus pectinirostris), without constructing a genomic library. Conserv Genet 10, 1957–1959 (2009). https://doi.org/10.1007/s10592-009-9867-3
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10592-009-9867-3