Skip to main content
Log in

Microsatellites for three distantly related genera in the Brassicaceae

  • Technical Note
  • Published:
Conservation Genetics Aims and scope Submit manuscript

Abstract

Microsatellites are important genetic markers both in population genetics and for delimitation of closely related species. However, to develop microsatellites for each target organism is expensive and time consuming. In this study, we have therefore developed 65 new microsatellite primers for the species Draba nivalis and tested cross-species and cross-genus transfer success of these primers for two other genera in the Brassicaceae; Cardamine and Smelowskia. Furthermore, 15 previously developed microsatellites were tested for amplification in these three genera. The microsatellite markers that amplify across these genera may be useful for other genera in the Brassicaceae as well.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • Barbará T, Palma-Silva C, Paggi GM et al (2007) Cross-species transfer of nuclear microsatellite markers: potential and limitations. Mol Ecol 16:3759–3767

    Article  PubMed  Google Scholar 

  • Bell CJ, Ecker JR (1994) Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19:137–144

    Article  PubMed  CAS  Google Scholar 

  • Beilstein MA, Al-Shehbaz IA, Kellogg EA (2006) Brassicaceae phylogeny and trichome evolution. Am J Bot 93:607–619

    Article  CAS  Google Scholar 

  • Brochmann C (1993) Reproductive strategies of diploid and polyploid populations of arctic Draba (Brassicaceae). Plant Syst Evol 185:55–83

    Article  Google Scholar 

  • Carlsen T (2007) Are there any trees in the Arctic? Reconstruction of evolutionary histories in a young biome. PhD thesis. University of Oslo

  • Clauss MJ, Cobban H, Mitchell-Olds T (2002) Cross-species microsatellite markers for elucidating population genetic structure in Arabidopsis and Arabis (Brassicaeae). Mol Ecol 11:591–601

    Article  PubMed  CAS  Google Scholar 

  • Jørgensen MH, Carlsen T, Skrede I, et al (2008) Microsatellites resolve the taxonomy of the polyploid Cardamine digitata aggregate (Brassicaceae). Taxon (in press)

  • Lowe AJ, Jones AE, Raybould AF et al (2002) Transferability and genome specificity of a new set of microsatellite primers among Brassica species of the U triangle. Mol Ecol Notes 2:7–11

    Article  CAS  Google Scholar 

  • Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York

  • Ponce MR, Robles P, Micol JL (1999) High-throughput genetic mapping in Arabidopsis thaliana. Mol Gen Genet 261:408–415

    Article  PubMed  CAS  Google Scholar 

  • Suwabe K, Iketani H, Nunome T et al (2002) Isolation and characterization of microsatellites in Brassica rapa L. Theor Appl Genet 104:1092–1098

    Article  PubMed  CAS  Google Scholar 

  • Uzunova MI, Ecke W (1999) Abundance, polymorphism and genetic mapping of microsatellites in oilseed rape (Brassica napus L.). Plant Breed 118:323–326

    Article  CAS  Google Scholar 

  • Van Treuren R, Kuittinen H, Karkkainen K et al (1997) Evolution of microsatellites in Arabis petraea and Arabis lyrata, outcrossing relatives of Arabidopsis thaliana. Mol Biol Evol 14:220–229

    PubMed  Google Scholar 

  • Westman AL, Kresovich S (1998) The potential for cross-taxa simple-sequence repeat (SSR) amplification between Arabidopsis thaliana L. and crop brassicas. Theor Appl Genet 96:272–281

    Article  CAS  Google Scholar 

Download references

Acknowledgments

Thanks to LG Kvernstuen for extracting DNA; the Rieseberg lab at Indiana University, especially M. Moody for advice and discussions; M.H. Jørgensen for providing fragment lengths for Cardamine; and M. Stoutemyer for providing two primers. This work was funded by grant 146515/420 from the Research Council of Norway to C. Brochmann, and grants from the Fulbright Foundation and Kristine Bonnevie Scholarship to I. Skrede.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Inger Skrede.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Skrede, I., Carlsen, T., Rieseberg, L.H. et al. Microsatellites for three distantly related genera in the Brassicaceae. Conserv Genet 10, 643–648 (2009). https://doi.org/10.1007/s10592-008-9598-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10592-008-9598-x

Keywords

Navigation