Skip to main content

Advertisement

Log in

Genetic population structure of the sagebrush Brewer’s sparrow, Spizella breweri breweri, in a fragmented landscape at the northern range periphery

  • Research Article
  • Published:
Conservation Genetics Aims and scope Submit manuscript

Abstract

Assessing the genetic consequences of habitat fragmentation is a crucial step in conservation planning for species in endangered habitats. We tested for the impact of natural habitat fragmentation on gene flow and genetic diversity in seven northern breeding locations of the sagebrush Brewer’s sparrow, Spizella breweri breweri. Genetic analyses using five highly variable DNA microsatellite loci suggested that individuals sampled within a sagebrush landscape fragmented by natural elements such as coniferous forest, comprise a single genetic population and that gene flow among them is unimpeded. We posit that juvenile dispersal links seemingly isolated breeding locales of this species, and discuss implications of our findings for conservation of migratory songbirds in the northern portion of their ranges in light of potential shifts in distribution due to climate change.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Andersen LW, Fog K, Damgaard C (2004) Habitat fragmentation causes bottlenecks and inbreeding in the European tree frog (Hyla arborea). Proc Roy Soc Lond B 271:1293–1302

    Article  Google Scholar 

  • Antolin AF, Van Horne B, Berger MD Jr, Holloway AK, Roach JL, Weeks RD Jr (2001) Effective population size and genetic structure of a Piute ground squirrel (Spermophilus mollis) population. Can J Zool 79:26–34

    Article  Google Scholar 

  • Arguedas N, Parker PG (2000) Seasonal migration and genetic population structure in house wrens. Condor 102:517–528

    Article  Google Scholar 

  • Bacles CFE, Lowe AJ, Ennos RA (2004) Genetic effects of chronic habitat fragmentation on tree species: the case of Sorbus aucuparia in a deforested Scottish landscape. Mol Ecol 13:573–584

    Article  PubMed  CAS  Google Scholar 

  • Beerli P (2002) Migrate: documentation and program, part of Lamarc. Version 1.6.9. http://evolution.genetics.washington.edu/lamarc.html

  • Beerli P (2004) Effect of unsampled populations on the estimation of population sizes and migration rates between sampled populations. Mol Ecol 13:827–836

    Article  PubMed  Google Scholar 

  • Beerli P, Felsenstein J (1999) Maximum likelihood estimation of migration rates and population numbers of two populations using a coalescent approach. Genetics 152:763–773

    PubMed  CAS  Google Scholar 

  • Beerli P, Felsenstein J (2001) Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc Natl Acad Sci U.S.A 98:4563–4568

    Article  PubMed  CAS  Google Scholar 

  • Brown LM, Ramey RR, Tamburini B, Gavin TA (2004) Population structure and mitochondrial DNA variation in sedentary Neotropical birds isolated by forest fragmentation. Conserv Genet 5:743–757

    Article  CAS  Google Scholar 

  • Brzustowski J (2002) Doh assignment test calculator. Online. Available: <http://www2.biology.ualberta.ca/jbrzusto/Doh.php> (12 March, 2002)

  • Burke DM, Nol E (2000) Landscape and fragment size effects on reproductive success of forest-breeding birds in Ontario. Ecol Appl 10:1749–1761

    Article  Google Scholar 

  • Collingham YC, Huntley B (2000) Impacts of habitat fragmentation and patch size upon migration rates. Ecol Appl 10:131–144

    Article  Google Scholar 

  • Corander J, Waldmann P, Sillanpää MJ (2003) Bayesian analysis of genetic differentiation between populations. Genetics 16:367–374

    Google Scholar 

  • Corander J, Waldmann P, Marttinen P, Sillanpaa MJ (2004) BAPS 2: enhanced possibilities for the analysis of genetic population structure. Bioinformatics 20:2363–2369

    Article  PubMed  CAS  Google Scholar 

  • Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001–2014

    PubMed  CAS  Google Scholar 

  • Dawson JG, Gibbs HL, Hobson KA, Yezerinac SM (1997) Isolation of microsatellite DNA markers from a passerine bird, Dendroica petechia (the yellow warbler), and their use in population studies. Heredity 79:506–514

    Article  PubMed  CAS  Google Scholar 

  • Di Rienzo A, Peterson AC Garza JC, Valdes AM, Slatkin M, Freimer NB (1994) Mutational processes of simple-sequence repeat loci in human populations. Proc Natl Acad Sci U.S.A. 91:3166–3170

    Article  PubMed  CAS  Google Scholar 

  • Donovan TM, Thompson FR, Faaborg J, Probst JR (1995) Reproductive success of migratory birds in habitat sources and sinks. Conserv Biol 9:1380–1395

    Article  Google Scholar 

  • Double MC, Dawson D, Burke T, Cockburn A (1997) Finding the fathers in the least faithful bird: a microsatellite-based genotyping system for the superb fairy wren Malurus cyaneus. Mol Ecol 6:691–693

    Article  CAS  Google Scholar 

  • Easterling DR, Horton B, Jones PD, Peterson TC, Karl TR, Parker DE, Salinger MJ, Razuvayev V, Plummer N, Jamason P, Folland CK (1997) Maximum and minimum temperature trends for the globe. Science 277:364–367

    Article  CAS  Google Scholar 

  • Environment Canada (2000) South Okanagan-Similkameen Conservation Program. A Prospectus. http://www.soscp.org/archives/soscp.pdf, Cited July 2000

  • Epperson BK, Allard RW (1987) Linkage disequilibrium between allozymes in natural populations of lodgepole pine. Genetics 115:341–352

    PubMed  CAS  Google Scholar 

  • Falush D, Stephens M, Pritchard JK (2003) Inference of population structure: extensions to linked loci and correlated allele frequencies. Genetics 164:1567–1587

    PubMed  CAS  Google Scholar 

  • Galbusera P, Lens L, Waiyaki E, Schenck T, Matthysen E (2000) Genetic variability and gene flow in the globally, critically endangered Taita thrush. Conserv Genet 1:45–55

    Article  CAS  Google Scholar 

  • Galbusera P, Githiru M, Lens L, Matthysen E (2004) Genetic equilibrium despite habitat fragmentation in an Afrotropical bird. Mol Ecol 13:1409–1421

    Article  PubMed  CAS  Google Scholar 

  • Garza JC, Williamson EG (2001) Detection of reduction in population size using data from microsatellite loci. Mol Ecol 10:305–318

    Article  PubMed  CAS  Google Scholar 

  • Gibbs JP, Faaborg J (1990) Estimating the viability of ovenbird and Kentucky warbler populations in forest fragments. Conserv Bio 4:193–196

    Article  Google Scholar 

  • Gravitol AD, Ballou JD, Fleischer RC (2001) Microsatellite variation within and among recently fragmented populations of the golden lion tamarin (Leontopithecus rosalia). Conserv Genet 2:1–9

    Article  Google Scholar 

  • Greenwood PJ, Harvey PH (1982) The natal and breeding dispersal of birds. Ann Rev Ecol Syst 13:1–21

    Article  Google Scholar 

  • Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48:361–372

    Article  PubMed  CAS  Google Scholar 

  • Hänfling B, Durka W, Brandl R (2004) Impact of habitat fragmentation on genetic population structure of roach, Rutilus rutilus, in a riparian ecosystem. Conserv Genet 5:247–257

    Article  Google Scholar 

  • Hanotte O, Zanon C, Pugh A, Greig C, Dixon A, Burke T (1994) Isolation and characterization of microsatellite loci in a passerine bird: the reed bunting Emberiza schoeniclus. Mol Ecol 3:529–530

    PubMed  CAS  Google Scholar 

  • Hitchings SP, Beebee TJC (1998) Loss of genetic diversity and fitness in common toad (Bufo bufo) populations isolated by inimical habitat. J Evol Biol 11:269–283

    Article  Google Scholar 

  • Holmes RT, Marra PP, Sherry TW (1996) Habitat-specific demography of breeding black-throated blue warblers (Dendroica caerulescens): implications for population dynamics. J Anim Ecol 65:183–195

    Article  Google Scholar 

  • Honnay O, Verheyen K, Butaye J, Jacquemyn H, Bossuyt B, Hermy M (2002) Possible effects of habitat fragmentation and climate change on the range of forest plant species. Ecol Lett 5:525–530

    Article  Google Scholar 

  • Hooper TD, Pitt MD (1995) Problem analysis for Chilcotin-Cariboo grassland biodiversity. Ministry of Environment, Lands and Parks Wildlife Branch, Victoria

    Google Scholar 

  • Hoover JP, Brittingham MC, Goodrich LJ (1995) Effects of forest patch size on nesting success of Wood Thrushes. Auk 112:146–155

    Google Scholar 

  • Jarvinen A (1993) Spatial and temporal variation in reproductive traits of adjacent northern pied fycatcher populations. Ornis Scand 24:33–40

    Article  Google Scholar 

  • Johnson JA, Toepfer JE, Dunn PO (2003) Contrasting patterns of mitochondrial and microsatellite population structure in fragmented populations of greater prairie-chickens. Mol Ecol 12:3335–3347

    Article  PubMed  CAS  Google Scholar 

  • Kappelle M, Van Vuuren MMI, Baas P (1999) Effects of climate change on biodiversity: a review and identification of key research issues. Biodiv Cons 8:1383–1397

    Article  Google Scholar 

  • Knick ST, Dobkin DS, Rotenberry JT, Schroeder MA, Vander Haegen WM, van Riper III C (2003) Teetering on the edge or too late? Conservation and research issues for avifauna of sagebrush habitats. Condor 105:611–634

    Article  Google Scholar 

  • Lea T (2002) Historical ecosystem mapping of the South Okanagan and Similkameen Valleys: 1800 to 2001. Ministry of Environment, Victoria, B.C. 1:20,000 maps

    Google Scholar 

  • Luikart G, Allendorf FW, Cornuet JM, Sherwin WB (1998) Distortion of allele frequency distributions provides a test for recent population bottlenecks. J Hered 89:238–247

    Article  PubMed  CAS  Google Scholar 

  • Mahony NA (2003) Reproductive ecology and population viability of Brewer’s sparrows at the northern edge of the breeding range. Dissertation, University of British Columbia

  • Neumann K, Wetton JH (1996) Highly polymorphic microsatellites in the house sparrow Passer domestics. Mol Ecol 5:307–309

    Article  PubMed  CAS  Google Scholar 

  • Ohta T, Kimura M (1973) A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet Res 22:201–204

    Article  Google Scholar 

  • Paczek S (2002) Effects of fine-scale and landscape-level habitat features on sagebrush breeding birds of the southern Okanagan and Similkameen Valleys, British Columbia. MSc Thesis, University of British Columbia

  • Paetkau DW, Calvert I, Sterling, Strobeck C (1995) Microsatellite analysis of population structure in Canadian polar bears. Mol Ecol 4:347–354

    PubMed  CAS  Google Scholar 

  • Parmesan C, Yohe G (2003) A globally coherent fingerprint of climate change impacts across natural systems. Nature 421:37–42

    Article  PubMed  CAS  Google Scholar 

  • Parmesan C, Ryrholm N, Stefanescu C, Hill JK, Thomas CD, Descimon H, Huntley B, Kaila L, Kullberg J, Tammaru T, Tennent WJ, Thomas JA, Warren M (1999) Poleward shifts in geographical ranges of butterfly species associated with regional warming. Nature 399:579–583

    Article  CAS  Google Scholar 

  • Payne R.B, Payne LL (1993) Breeding dispersal in indigo buntings: circumstances and consequences for breeding success and population structure. Condor 95:1–24

    Article  Google Scholar 

  • Pearse DE, Crandall KA (2004) Beyond F-ST: analysis of population genetic data for conservation. Conserv Genet 5:585–602

    Article  CAS  Google Scholar 

  • Petersen KL, Best LB (1987) Effects of prescribed burning on nongame birds in a sagebrush community. Wildl Soc Bull 15:317–329

    Google Scholar 

  • Petren K (1998) Microsatellite primers from Geospiza fortis and cross-species amplification in Darwin’s finches. Mol Ecol 7:1771–1788

    Article  Google Scholar 

  • Piry S, Luikart G, Cornuet JM (1999) BOTTLENECK: A program for detecting recent effective population size reductions from allele data frequencies. J Hered 90:502–503

    Article  Google Scholar 

  • Porneluzi P, Bednarz JC, Goodrich LJ, Zawada N, Hoover J (1993) Reproductive performance of territorial ovenbirds occupying forest fragments and contiguous forest in Pennsylvania. Conserv Biol 7:618–622

    Article  Google Scholar 

  • Pritchard JK, Stephens M, Donnely P (2000) Influence of population structure using multi-locus genotype data. Genetics 155:945–959

    PubMed  CAS  Google Scholar 

  • Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223–225

    Article  Google Scholar 

  • Robinson RA, Learmonth JA, Hutson AM, Macleod CD, Sparks TH, Leech DI, Pierce GJ, Rehfisch MM, Crick HQP (2005) Climate change and migratory species. BTO Research Report, 414

  • Root TL, Price JT, Hall KR, Schneider SH, Rosenzweig C, Pound JA (2003) Fingerprints of global warming on wild animals and plants. Nature 421:57–60

    Article  PubMed  CAS  Google Scholar 

  • Rotenberry JT, Patten MA, Preston KL (1999) Brewer’s Sparrow (Spizella breweri). In: Poole A, Gill F (eds) The Birds of North America, No. 390. The Birds of North America, Inc., Philadelphia, PA

    Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York

  • Sarrell MJ, McGuinness KP (1996) Status of the Brewer’s Sparrow in British Colombia. Ministry of Environment, Lands, and Parks Wildlife Branch, Victoria

    Google Scholar 

  • Sauer JR, Hines JE, Gough G, Thomas I, Peterjohn BE (2005) The North American Breeding Bird Survey results and analysis. Patuxent Wildlife Research Center, Laurel

    Google Scholar 

  • Schneider S, Kueffer JM, Roessli D, Excoffier L (1996) Arlequin, a software package for population genetics, Version 1.1. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva

    Google Scholar 

  • Segelbacher G, Höglund J, Storch I (2003) From connectivity to isolation: genetic consequences of population fragmentation in capercaillie across Europe. Mol Ecol 12:1773–1780

    Article  PubMed  CAS  Google Scholar 

  • Slatkin M (1987) Gene flow and the geographic structure of natural populations. Science 236:787–792

    Article  PubMed  CAS  Google Scholar 

  • Slatkin M, Excoffier L (1996) Testing for linkage disequilibrium in genotypic data using the expectation-maximization algorithm. Heredity 76:377–383

    PubMed  Google Scholar 

  • Tallmon DA, Draheim HM, Mills LS, Allendorf FW (2002) Insights into recently fragmented vole populations from combined genetic and demographic data. Mol Ecol 11:699–709

    Article  PubMed  CAS  Google Scholar 

  • Templeton AR, Robertson RJ, Brisson J, Strasberg J (2001) Disrupting evolutionary processes: The effect of habitat fragmentation on collared lizards in the Missouri Ozarks. Proc Natl Acad Sci U.S.A 98:5426–5432

    Article  PubMed  CAS  Google Scholar 

  • Thomas CD, Lennon JJ (1999) Birds extend their ranges northwards. Nature 399:213–213

    Article  CAS  Google Scholar 

  • Thomas CD, Cameron A, Green RE, Bakkenes M, Beaumont LJ, Collingham YC, Erasmus BF, De Siqueira MF, Grainger A, Hannah L, Hughes L, Huntley B, Van Jaarsveld AS, Midgley GF, Miles L, Ortega-Huerta MA, Peterson AT, Phillips OL, Williams SE (2004) Extinction risk from climate change. Nature 427:145–148

    Article  PubMed  CAS  Google Scholar 

  • Turner JS, Krannitz PG (2001) Conifer density increases in semi-desert habitats of British Columbia in the absence of fire. Northwest Sci 75:176–182

    Google Scholar 

  • Vander Haegen WM, Schroeder MA, DeGraaf RM (2002) Predation on real and artificial nests in shrubsteppe landscapes fragmented by agriculture. Condor 104:496–506

    Article  Google Scholar 

  • Walker B (2004) Effects of management practices on grassland birds: Brewer’s sparrow. Northern Prairie Wildlife Research Center, Jamestown, ND. (http://www.npwrc.usgs.gov/resource/literatr/grasbird/brsp/brsp.htm) (Version 12AUG2004)

  • Walther G-R, Post E, Convey P, Menzel A, Parmesan C, Beebee TJC, Fromentin J-M, Hoegh-Guldberg O, Bairlein F (2002) Ecological response to recent climate change. Nature 416:389–395

    Article  PubMed  CAS  Google Scholar 

  • Weir BS, Cockerham CC (1984) Estimating F-statistics for analysis of population structure. Evolution 38:1358–1370

    Article  Google Scholar 

  • Wilson PJ, Provan J (2003) Effect of habitat fragmentation on levels and patterns of genetic diversity in natural populations of the peat moss Polytrichum commune. Proc Roy Soc Lond B 270:881–886

    Article  Google Scholar 

  • Wright S (1951) The genetical structure of populations. Ann Eugen 15:323–354

    Google Scholar 

  • Yamamoto S, Morita K, Koizumi I, Maekawa K (2004) Genetic differentiation of white-spotted charr (Salvelinus leucomaenis) populations after habitat fragmentation: spatial-temporal changes in gene frequencies. Conserv Genet 5:529–538

    Article  CAS  Google Scholar 

Download references

Acknowledgements

Funding was provided to PK by the Endangered Species Recovery Fund, Habitat Conservation Trust Fund, Environment Canada, Human Resources Development Canada, and CarreerEdge; to NM by Natural Sciences and Engineering Research Council of Canada (NSERC) and University of British Columbia University Graduate Fellowships; to BW by the Washington Department of Fish and Wildlife, the Association of Field Ornithologists, the University of Montana, and the Five Valleys Audubon Society, and to SCL and PTB by NSERC Discovery grants. We thank Ryan Gill, Harry van Oort, Shelagh Parken and Steve Ogle for help in collecting the feathers. We also gratefully acknowledge Louisiana State University Museum of Natural Science (LSUMNS) for the use of tissue samples.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Stephen C. Lougheed.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Croteau, E.K., Lougheed, S.C., Krannitz, P.G. et al. Genetic population structure of the sagebrush Brewer’s sparrow, Spizella breweri breweri, in a fragmented landscape at the northern range periphery. Conserv Genet 8, 1453–1463 (2007). https://doi.org/10.1007/s10592-007-9296-0

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10592-007-9296-0

Keywords

Navigation