Skip to main content
Log in

Phylogeographic Analyses Suggest Multiple Lineages of Crystallaria asprella (Percidae: Etheostominae)

  • Published:
Conservation Genetics Aims and scope Submit manuscript

Abstract

The crystal darter, Crystallaria asprella, exists in geographically isolated populations that may be glacial relicts from its former, wide distribution in the Eastern U.S. An initial phylogeographic survey of C. asprella based upon the mitochondrial cytochrome b (cyt b) gene indicated that there were at least four distinct populations within the species: Ohio River basin, Upper Mississippi River, Gulf coast, and lower Mississippi River. In particular, the most divergent population was the most recently discovered, from the Elk River, WV, in the Ohio River basin, and it was postulated that this population represents an undescribed, potentially threatened species. However, differentiation observed at a single gene region is generally not considered sufficient evidence to establish taxonomic status. In the present study, nucleotide variation at the mitochondrial control region and a nuclear S7 ribosomal gene intron were compared to provide independent verification of phylogeographic results between individuals collected from the same five disjunct populations previously surveyed. Variation between populations at the control region was substantial (except between Gulf drainages) and was concordant with patterns of sequence divergence from cyt b. Only the Elk River population was resolved as monophyletic based upon nuclear S7, but significant differences based upon ΦST statistics were observed between most populations. Morphometric data were consistent with molecular data regarding the distinctiveness of the Elk River population. It is proposed that populations of C. asprella consist of at least four distinct population segments, and that the Elk River group likely constitutes a distinct species.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • JC Avise (1994) Molecular Markers, Natural History, and Evolution Chapman & Hall New York

    Google Scholar 

  • JC Avise (1998) ArticleTitleThe history and purview of phylogeography: A personal reflection Mol. Ecol. 7 371–379 Occurrence Handle10.1046/j.1365-294x.1998.00391.x

    Article  Google Scholar 

  • JC Avise (2000) Phylogeography Harvard University Press Cambridge Massachusetts

    Google Scholar 

  • JC Avise J Arnold RM Ball E Bermingham T Lamb JE Neigel CA Reeb NC Saunders (1987) ArticleTitleIntraspecific phylogeography: The mitochondrial DNA bridge between population genetics and systematics Ann. Rev. Ecol. Syst. 18 489–522

    Google Scholar 

  • JWO Ballard MC Whitlock (2004) ArticleTitleThe incomplete history of mitochondria Mol. Ecol. 13 729–744 Occurrence Handle10.1046/j.1365-294X.2003.02063.x Occurrence Handle15012752

    Article  PubMed  Google Scholar 

  • FL Bookstein B Chernoff RL Elder JM Humphries GR Smith RE Strauss (1985) Morphometrics in Evolutionary Biology The Academy of Natural Sciences of Philadelphia Philadelphia, Pennsylvania

    Google Scholar 

  • K Bremer (1988) ArticleTitleThe limits of amino acid sequence data in angiosperm phylogenetic reconstruction Evolution 42 795–803 Occurrence Handle1:CAS:528:DyaL1cXlsVKntrY%3D

    CAS  Google Scholar 

  • K Bremer (1994) ArticleTitleBranch support and tree stability Cladistics 10 295–304 Occurrence Handle10.1111/j.1096-0031.1994.tb00179.x

    Article  Google Scholar 

  • CW Birky P Fuerst T Maruyama (1989) ArticleTitleOrganelle gene diversity under migration, mutation and drift: Equilibrium expectations, approach to equilibrium, effects of heteroplasmic cells, and comparison to nuclear genes Genetics 121 613–627 Occurrence Handle2714640

    PubMed  Google Scholar 

  • WM Brown M George SuffixJr. AC Wilson (1979) ArticleTitleRapid evolution of animal mitochondrial DNA Proc. Natl. Acad. Sci. USA 76 IssueID4 1967–1971 Occurrence Handle1:CAS:528:DyaE1MXktVWmsb8%3D Occurrence Handle109836

    CAS  PubMed  Google Scholar 

  • S Chow K Hazama (1998) ArticleTitleUniversal PCR primers for S7 ribosomal protein gene introns in fish Mol. Ecol. 7 1247–1263

    Google Scholar 

  • DA Cincotta ME Hoeft (1987) ArticleTitleRediscovery of the Crystal Darter, Ammocrypta asprella, in the Ohio River basin Brimleyana 13 133–136

    Google Scholar 

  • M Clement D Posada KA Crandall (2000) ArticleTitleTCS: A computer program to estimate gene genealogies Mol. Ecol. 9 1657–1659 Occurrence Handle10.1046/j.1365-294x.2000.01020.x Occurrence Handle1:CAS:528:DC%2BD3cXnvV2gtbw%3D Occurrence Handle11050560

    Article  CAS  PubMed  Google Scholar 

  • J Cracraft (1983) Species concepts and speciation analysis. RF Johnston (Eds) Current Ornithology Plenum Press New York 159–187

    Google Scholar 

  • KA Crandall AR Templeton (1999) ArticleTitleThe zoogeography and centers of origin of the crayfish subgenus Procericambarus (Decapoda: Cambaridae) Evolution 53 123–134

    Google Scholar 

  • CW Cunningham (1997) ArticleTitleCan three incongruence tests predict when data should be combined? Mol. Biol. Evol. 14 733–740 Occurrence Handle1:CAS:528:DyaK2sXksVahs7c%3D Occurrence Handle9214746

    CAS  PubMed  Google Scholar 

  • JE Deacon G Kobetich JD Williams S Contreras (1979) ArticleTitleFishes of North America endangered, threatened, or of special concern Fisheries 4 29–44

    Google Scholar 

  • SV Edwards P Beerli (2000) ArticleTitlePerspective: Gene divergence, population divergence, and the variance in coalescent time in phylogeographic studies Evolution 54 1839–1854 Occurrence Handle1:STN:280:DC%2BD3M3jt1Kjsw%3D%3D Occurrence Handle11209764

    CAS  PubMed  Google Scholar 

  • L Excoffier PE Smouse JM Quattro (1992) ArticleTitleAnalysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data Genetics 131 479–491 Occurrence Handle1:CAS:528:DyaK38XlsVCntro%3D Occurrence Handle1644282

    CAS  PubMed  Google Scholar 

  • JS Farris M Källersjö AJ Kluge C. Bult (1994) ArticleTitleTesting significance of incongruence Cladistics 10 315–319

    Google Scholar 

  • J Felsenstein (1985) ArticleTitleConfidence limits on phylogenies: An approach using the bootstrap Evolution 39 783–791

    Google Scholar 

  • SG George WT Slack NH Douglas (1996) ArticleTitleDemography, habitat, reproduction, and sexual dimorphism of the Crystal Darter, Crystallaria asprella (Jordan), from South-Central Arkansas Copeia 1 68–78

    Google Scholar 

  • Grady JM, Cashner RC, Rogers JS (1990) Evolutionary and biogeographic relationships of Fundulus catenatus (Fundulidae). Copeia 315–323.

  • JM Guill DC Heins CS Hood (2003) ArticleTitleThe effect of phylogeny on interspecific body shape variation in darters (Pisces: Percidae) Syst. Biol. 52 IssueID4 488–500 Occurrence Handle12857640

    PubMed  Google Scholar 

  • ME Hardy JM Grady EJ Routman (2002) ArticleTitleIntraspecific phylogeography of the slender madtom: The complex evolutionary history of the Central Highlands of the United States Mol. Ecol. 11 2393–2403 Occurrence Handle10.1046/j.1365-294X.2002.01616.x Occurrence Handle1:CAS:528:DC%2BD38XptlSls7c%3D Occurrence Handle12406249

    Article  CAS  PubMed  Google Scholar 

  • Hubbs CL, Lagler KL (1964) Fishes of the Great Lakes Region, 2nd edn. Cranbrook Institute Scientific Bulletin.

  • RR Hudson M Turelli (2003) ArticleTitleStochasticity overrules the ‘three-times rule’: Genetic drift, genetic draft, and coalescent times for nuclear loci versus mitochondrial DNA Evolution 57 182–190 Occurrence Handle12643581

    PubMed  Google Scholar 

  • JM Humphries FL Bookstein B Chernoff GR Smith RL Elder SG Poss (1981) ArticleTitleMultivariate discrimination by shape in relation to size Syst. Zool. 30 291–308

    Google Scholar 

  • TH Jukes CR Cantor (1969) Evolution of protein molecules HN Munro (Eds) Mammalian Protein Metabolism Academic Press New York 21–132

    Google Scholar 

  • C Labarca K Paigen (1980) ArticleTitleA simple, rapid, and sensitive DNA assay procedure Anal. Biochem. 102 344–352 Occurrence Handle10.1016/0003-2697(80)90165-7 Occurrence Handle1:CAS:528:DyaL3cXhsF2qurk%3D Occurrence Handle6158890

    Article  CAS  PubMed  Google Scholar 

  • RL Mayden (1985) ArticleTitleBiogeography of the Ouachita highland fishes Southwest. Nat. 30 195–211

    Google Scholar 

  • RL Mayden (1988) ArticleTitleVicariance biogeography, parsimony, and evolution in North American freshwater fishes Syst. Zool. 37 329–355

    Google Scholar 

  • Melhorn WN, Kempton JP (1991) The Teays system: A summary. In: Geology and Hydrology of the Teays-Mahomet Bedrock Valley System. (eds. Melhorn WN, Kempton JP) pp. 125–128. Geol. Soc. Am. Spec. Pap. 258.

  • TJ Near LM Page RL Mayden (2001) ArticleTitleIntraspecific phylogeography of Percina evides (Percidae: Etheostomatinae): An additional test of the Central Highlands pre-Pleistocene vicariance hypothesis Mol. Ecol. 10 2235–2240 Occurrence Handle10.1046/j.1365-294X.2001.01362.x Occurrence Handle1:STN:280:DC%2BD3MrgslWitg%3D%3D Occurrence Handle11555265

    Article  CAS  PubMed  Google Scholar 

  • M Nei (1987) Molecular Evolutionary Genetics Columbia University Press New York

    Google Scholar 

  • R Nichols (2001) ArticleTitleGene trees and species trees are not the same Trends Ecol. Evol. 16 358–364 Occurrence Handle10.1016/S0169-5347(01)02203-0 Occurrence Handle11403868

    Article  PubMed  Google Scholar 

  • Page LM (1980) Ammocrypta asprella (Jordan), Crystal Darter In: Atlas of North American Freshwater Fishes (eds. DS Lee CR Gilbert CH Hocutt RE Jenkins DE McAllister JR Stauffer Jr.), p. 615. North Carolina State Museum of Natural History, Raleigh.

  • LM Page (1983) Handbook of Darters TFH Publications, Inc. Neptune City, NJ

    Google Scholar 

  • LM Page M Hardman TJ Near (2003) ArticleTitlePhylogenetic relationships of barcheek darters (Percidae: Etheosoma, subgenus Catonotus) with descriptions of two new species Copeia 3 512–530

    Google Scholar 

  • SR Palumbi F Cipriano (1998) ArticleTitleSpecies identification using genetic tools: the value of nuclear and mitochondrial gene sequences in whale conservation J. Heredity 89 459–464 Occurrence Handle10.1093/jhered/89.5.459 Occurrence Handle1:CAS:528:DyaK1cXntFCjurc%3D

    Article  CAS  Google Scholar 

  • Pflieger WL (1971) A Distributional Study of Missouri Fishes. University of Kansas Publication, Museum of Natural History 20, pp. 225–570.

  • D Posada KA Crandall (1998) ArticleTitleModeltest: Testing the model of DNA substitution Bioinformatics 14 IssueID9 817–818 Occurrence Handle10.1093/bioinformatics/14.9.817 Occurrence Handle1:CAS:528:DyaK1MXktlCltw%3D%3D Occurrence Handle9918953

    Article  CAS  PubMed  Google Scholar 

  • D Posada KA Crandall (2001) ArticleTitleSelecting the best-fit model of nucleotide substitution Syst. Biol. 50 580–601 Occurrence Handle10.1080/106351501750435121 Occurrence Handle1:STN:280:DC%2BD38zntVOmuw%3D%3D Occurrence Handle12116655

    Article  CAS  PubMed  Google Scholar 

  • ER Routman R Wu AR Templeton (1994) ArticleTitleParsimony, molecular evolution, and biogeography: The case of the North American giant salamander Evolution 48 1799–1809

    Google Scholar 

  • J Rozas R Rozas (1999) ArticleTitleDnaSP version 3: An integrated program for molecular population genetics and molecular evolutionary analysis Bioinformatics 15 174–175 Occurrence Handle10.1093/bioinformatics/15.2.174 Occurrence Handle1:CAS:528:DyaK1MXisVOksrY%3D Occurrence Handle10089204

    Article  CAS  PubMed  Google Scholar 

  • J Sambrook EF Fritsch T Maniatis (1989) Molecular Cloning: A Laboratory Manual EditionNumber2 Cold Spring Harbor Press New York

    Google Scholar 

  • S Schneider D Roessli L Excoffier (2000) A software for population genetics data analysis University of Geneva, Genetics and Biometry Laboratory Geneva, Switzerland

    Google Scholar 

  • O Seehausen E Koetsier MV Schneider LJ Chapman CA Chapman ME Knight GF Turner JJM Alphen Particlevan R Bills (2003) ArticleTitleNuclear markers reveal unexpected genetic variation and a Congolese-Nilotic origin of the Lake Victoria cichlid species flock Proc R. Soc. Lond. B 270 129–137 Occurrence Handle10.1098/rspb.2002.2153

    Article  Google Scholar 

  • KL Shaw (2002) ArticleTitleConflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: What mtDNA reveals and conceals about modes of speciation in Hawaiian crickets Proc. Natl. Acad. Sci. USA 99 IssueID25 16122–16127 Occurrence Handle10.1073/pnas.242585899 Occurrence Handle1:CAS:528:DC%2BD38Xps1ens7c%3D Occurrence Handle12451181

    Article  CAS  PubMed  Google Scholar 

  • MD Sorenson (1999) TreeRot Boston University Boston

    Google Scholar 

  • RM Strange BM Burr (1997) ArticleTitleIntraspecific phylogeography of North American highland fishes: A test of the Pleistocene vicariance hypothesis Evolution 51 IssueID3 885–897

    Google Scholar 

  • JR Stauffer SuffixJr. ES Snik Particlevan (1997) ArticleTitleNew species of Etheostoma (Teleostei: Percidae) from the upper Tennessee River Copeia 1997 116–122

    Google Scholar 

  • Swofford DL (2003) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0. Sinauer Associates, Sunderland, Massachusetts.

  • EB Taylor JD McPhail (2000) ArticleTitleHistorical contingency and ecological determinism interact to prime speciation in sticklebacks, Gasterosteus Proc. R. Soc. Lond. B 267 2375–2384 Occurrence Handle10.1098/rspb.2000.1167 Occurrence Handle1:STN:280:DC%2BD3M7ksFaktw%3D%3D

    Article  CAS  Google Scholar 

  • AR Templeton KA Crandall CF Sing (1992) ArticleTitleA cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation Genetics 132 619–633 Occurrence Handle1:CAS:528:DyaK3sXhslSrsQ%3D%3D Occurrence Handle1385266

    CAS  PubMed  Google Scholar 

  • JD Thompson DG Higgins TJ Gibson (1994) ArticleTitleCLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucl. Acids Res. 22 IssueID22 4673–4680 Occurrence Handle1:CAS:528:DyaK2MXitlSgu74%3D Occurrence Handle7984417

    CAS  PubMed  Google Scholar 

  • TF Turner JC Trexler DN Kuhn HW Robison (1996) ArticleTitleLife history variation and comparative phylogeography of darters (Pisces: Percidae) from the North American central highlands Evolution 50 IssueID5 2023–2036

    Google Scholar 

  • EO Wiley RL Mayden (1985) ArticleTitleSpecies and speciation in phylogenetic systematics, with examples from the North American fish fauna Ann. Mo. Bot. Gard. 72 596–635

    Google Scholar 

  • EO Wiley RH Hagen (1997) Mitochondrial DNA sequence variation among the sand darters (Percidae: Teleostei) TD Kocher CA Stepien (Eds) Molecular Systematics of Fishes Academic Press San Diego CA 75–96

    Google Scholar 

  • JE Williams JE Johnson DA Hendrickson S Contreras-Balderas JD Williams M Navarro-Mendoza DE McAllister JE Deacon (1989) ArticleTitleFishes of North America endangered, threatened, or of special concern Fisheries 14 2–20 Occurrence Handle10.1577/1548-8446(1989)014<0002:FONAET>2.0.CO;2

    Article  Google Scholar 

  • RM Wood ME Raley (2000) ArticleTitleCytochrome b sequence variation in the Crystal Darter Crystallaria asprella (Actinopterygii: Percidae) Copeia 1 20–26

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Tim L. King.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Morrison, C.L., Lemarié, D.P., Wood, R.M. et al. Phylogeographic Analyses Suggest Multiple Lineages of Crystallaria asprella (Percidae: Etheostominae). Conserv Genet 7, 129–147 (2006). https://doi.org/10.1007/s10592-005-5681-8

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10592-005-5681-8

Keywords

Navigation