Precocious detection on amphibian oocyte lampbrush chromosomes of subtle changes in the cellular localisation of the Ro52 protein induced by in vitro culture
Subterminal lampbrush loops of one of the 12 bivalents of the oocyte karyotype of Pleurodeles waltl (Amphibian, Urodele) underwent prominent morphological changes upon in vitro culture. These loops exhibited a fine ribonucleoprotein (RNP) granular matrix, which evolved during culture into huge structures that we have named ‘chaussons’ (slippers). This phenomenon involved progressive accumulation of proteins in the RNP matrix without protein neosynthesis. One of these proteins, which translocated into the nucleus during the culture, was identified as a homolog of the human Ro52 E3 ubiquitin ligase. RNA polymerase III was also found to accumulate on the same loops. These results suggest that the subterminal loops of bivalent XII act as a storage site for the components of a nuclear machinery involved in the quality control of RNA synthesis and maturation in response to cellular stress. They also emphasise the considerable value of the lampbrush chromosome system for a direct visualisation of modifications in gene expression and open the question of a nuclear accumulation of Ro52 in human or animal oocytes cultured in vitro for assisted reproductive technologies (ART).
KeywordsAmphibian Pleurodeles waltl oocyte lampbrush chromosomes Ro52/TRIM21 RNA pol III
Assisted reproductive technologies
Bovine serum albumin
Modified Barth’s solution
Tricaine methane sulfonate
Phosphate-buffered saline + Tween
- Pol III
RNA polymerase III
Really interesting new gene
Systemic lupus erythematosus
Left subterminal loops
Right subterminal loop
Over the last five decades, the amphibian oocyte has been widely used as an experimental system to study complex biological processes. Because of its large size and easy manipulation, in vitro translated RNA, plasmid DNA, proteins or somatic nuclei can be easily injected into the cytoplasm or the large nucleus, also called germinal vesicle (GV; for a review, see Halley-Stott et al. 2010). The fate of these exogenous elements can be investigated by further in vitro culture of the injected oocyte, in which RNA transcription and protein synthesis may continue for up to several weeks.
The germinal vesicle contains lampbrush chromosomes (LBCs) which are giant in size and actively transcribed. They are considered as a prime model for the analysis of transcriptional and posttranscriptional processes (for a review, see Morgan 2002; Gall et al. 2004; Sommerville 2010; Macgregor 2012). At the diplotene stage, these chromosomes are associated in bivalents whose axes comprised a succession of highly condensed chromatin regions, the chromomeres, from which lateral loops unfold that are the sites of intense RNA synthesis. The nascent RNA transcripts associate with proteins to form the ribonucleoprotein (RNP) matrix of the loops, with some proteins common to all lateral loops and others specific of a subset. Almost all loops share a common basic organisation with transcripts appearing as fibrils comprising 30-nm RNP particles, but they differ in their size and the degree of aggregation of the RNP fibrils. Whilst the majority of the loops conform to a standard type in which the RNP matrix exhibits a fine fibrous texture, others such as the granular, globular and giant fusing loops display distinct morphologies. They are always observed at the same chromosomal loci and constitute obvious landmarks, which enabled LBC maps to be drawn up in many newt species (for a review, see Callan 1986) and in the anurans Xenopus laevis (Callan et al. 1987) and Xenopus tropicalis (Penrad-Mobayed et al. 2009). LBCs have also been used as a powerful system for a direct visualisation of changes in gene expression in the oocyte. Their architecture is dynamic and directly related to transcriptional and posttranscriptional processes any modifications of which are reflected by concomitant morphological variations in chromosomal structure. Thus, analysis of LBCs after cold or heat shock treatment revealed a morphological evolution of specific loops, which occurred at constant and reproducible loci (for a review, see Angelier et al. 1990).
We report here the observation of such a prominent morphological development affecting the subterminal loops of bivalent XII in full-grown (stage VI) oocytes (Bonnanfant-Jaïs and Mentré 1983) of the newt Pleurodeles waltl (Amphibian, Urodele) when cultured in vitro. Using polyclonal antibodies, we provide evidence that this major structural change was concomitant with an accumulation of the Ro52 E3 ubiquitin ligase and RNA polymerase III (pol III) on these loops.
Materials and methods
P. waltl were raised in our laboratory at 18 °C. Ovarian biopsies were performed on adult females anaesthetized in 0.15 % MS222 (Sigma Chemical, St. Louis, MO). Oocytes were defolliculated for 2–3 h in saline buffer OR2 containing 0.15 % collagenase type I (Sigma Chemical). Full-grown oocytes (stage VI; Bonnanfant-Jaïs and Mentré 1983) were selected and incubated at 18 °C either in modified Barth’s solution (MBS) buffer (Gurdon 1977) or in the 199 culture medium with 25 mmol/L HEPES (Gibco) supplemented with gentamycin (5 μg/mL). Oocytes were incubated with cycloheximide (200 μg/ml) for 24 h, as indicated.
Nuclear spreads and immunofluorescence
Germinal vesicles from stage VI oocytes were manually isolated in 75 mmol/L KCl, 25 mmol/L NaCl, 1 mmol/L MgCl2 and 0.05 mmol/L CaCl2 (pH 7.2); lampbrush chromosomes were prepared as described previously (Penrad-Mobayed et al. 2010). Nuclear spread preparations were fixed for 30 min at 4 °C in phosphate-buffered saline (PBS) containing 2 % paraformaldehyde and 1 mM/L MgCl2, washed with PBS and blocked for 10 min with horse serum at 10 % dilution. They were then incubated with a rabbit polyclonal anti-Ro52 antiserum (Ricchiuti et al. 1997; kindly supplied by S. Muller, I.B.M.C, Strasbourg) at 1:250 dilution or a rabbit polyclonal anti-RPC53 (kindly supplied by R.G. Roeder, Rockefeller University) directed against a pol III subunit at a 1:250 dilution. After washing with PBS, preparations were incubated with the secondary antibody (Alexa 488 goat anti-rabbit IgG, Invitrogen Corp., or biotinylated goat anti-rabbit diluted 1:50 and Texas Red–streptavidin diluted 1:50). Preparations were post-stained either with 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI) at a concentration of 0.5 μg/mL or Hoechst 33342 (1:1,000). Fluorescence microscopy was performed using a Leitz DMRB CDD camera and the images assembled using Adobe Photoshop.
Incubation conditions for in vitro RNA synthesis and autoradiography
Oocytes were incubated in MBS buffer which contained 250 μCi/mL of 5,6-3H-uridine (aqueous solution, sp. act., 42 Ci/mM) and 250 μCi/mL of 5,6-3H-cytidine (aqueous solution, sp. act. 30 Ci/mM). Incubation time ranged from 24 to 48 h. Chromosome preparations were fixed for 30 min in 2 % paraformaldehyde and processed for autoradiography as previously described (Penrad-Mobayed et al. 1986). Chromosomes were stained as described by (Gall et al. 1981) with Coomassie blue (0.1 % in 50 % methanol, 10 % acetic acid) for 10 min.
Protein extraction, SDS polyacrylamide gel electrophoresis and Western blots
Oocytes were incubated in MBS containing 2 % TCA (w/v) for 20 min to precipitate proteins, washed with PBS and kept at 4 °C overnight before dissection. Air-dried germinal vesicles were resuspended in Laemmli buffer and treated for electrophoresis. Cytoplasms from enucleated oocytes were homogenized in Tris-EDTA buffer containing 0.1 mg/mL pancreatic ribonuclease A and 10 mmol/L Pefabloc (Interchim, USA). The homogenate was centrifuged for 10 min at 10,000×g. Proteins of the supernatant were precipitated overnight at −20 °C The precipitate was recovered by 30 min centrifugation at 5,000×g and treated for electrophoresis. The samples were denatured by heating in Laemmli buffer and separated in a 4–12 % NuPage gels (Invitrogen). After transfer, PVDF membranes were incubated overnight in PBS with 0.1 % Tween 20 (PBST) and 5 % fat-free dry milk at 4 °C and further incubated with either the primary rabbit polyclonal anti-Ro52 at 1:500 dilution or the monoclonal anti-alpha actin antibody (MP Biomedicals) at 1:10,000 dilution in PBS with 0.5 % bovine serum albumin (BSA) for 1 h. They were then washed in PBST, incubated with either an horseradish peroxidase (HRP)-conjugated goat anti-rabbit or an HRP-conjugated rabbit anti-mouse (Jackson ImmunoResearch) diluted to 1:10,000 in PBS with 0.5 % BSA for 1 h and washed in PBST. Detection was performed using the ECL ‘SuperSignal West Femto’ (Thermo Scientific). Membranes were scanned with the LAS-3000 imaging system (Fuji).
Effects of in vitro culture on lampbrush chromosome structure
Immunolocalization of Ro52 on LBC spreads of P. waltl oocytes
Morphological changes occurring on one loop may be due to variations in the composition of proteins that form its RNP matrix. We investigated the possibility that the Ro52 protein might be one of them because Simon et al. (1998) and Vishnyakova et al. (2004) had reported previously the labelling of one loop near the right extremity of bivalent XII of P. waltl using a polyclonal anti-Ro52 antiserum. We first checked the specificity of this antiserum by immunoblotting using nuclear extracts of P. waltl oocytes. The antiserum reacted with one major band of the expected 52-kDa molecular mass (Fig. 8a). When applied to LBCs from freshly isolated control oocytes, the anti-Ro52 antibody strongly labelled the left subterminal loops (Figs. 1 and 4a) and one small loop close to the right subterminal loops, which were themselves lightly labelled (Figs. 1 and 4b). In addition, the antibody labelled strongly five loops on bivalent I, II and V and weakly subterminal loops on all these chromosomes (Figs. 1 and 4).
Changes in the nucleocytoplasmic distribution of Ro52 during in vitro culture
Prolonged in vitro culture of full-grown P. waltl oocytes led to a huge development of the RNP matrix of the subterminal loops of bivalent XII, the right ones in particular. The appearance of these atypical structures that we propose to refer to as ‘chaussons’ (slippers) is likely due to an accumulation of proteins that interact with the RNP transcripts of these loops. Among these proteins is a human Ro52-related protein whose nuclear level increases in parallel with the increase in the staining intensity of the RNP matrix of the subterminal loops of bivalent XII during the in vitro culture.
The question arises whether similar culture-induced modifications could be observed in amphibians other than P. waltl. Gurdon et al. (1971) initiated the use of in vitro-cultured amphibian oocytes as an experimental system. They demonstrated that oocytes cultured in a simple saline solution could translate any injected mRNA over a long period with a high efficiency and no species specificity. Since then, in vitro culture of injected oocytes for 1–3 days has been used extensively to analyse with LBCs as readout the effect on mRNA translation, chromatin condensation and nucleo-cytoplasmic trafficking of a variety of molecules, be they oligonucleotides, RNAs, plasmid DNAs or antibodies (for a review, see Morgan 2002). The vast majority of these studies has been carried out with X. laevis oocytes whose LBCs display lateral loops with a smaller size compared to that of the newt LBCs. This may be the reason why no culture-induced modification of the morphology of Xenopus LBC lateral loops has been reported to date. To our knowledge, however, no detailed study of such modifications has been reported either in newt species in which LBCs have been mapped.
Similarly to Vishnyakova et al. (2004), we have observed that less than ten loops distributed over four bivalents including bivalent XII, some of them of a large size, were stained with the anti-Ro52 antibody in P. waltl oocytes before culture. We have detected additional labelled loci not described by Vishnyakova et al. (2004), such as the subterminal loops at the left extremity of bivalent XII and the subterminal loops at the ends of other bivalents (Fig. 1). All these loops exhibited a morphologically similar RNP matrix in phase microscopy. It is remarkable that only the subterminal loops of bivalent XII underwent a modification into a ‘chausson’ structure upon in vitro culture. This implies that the RNP matrix of these loops may differ from that of other Ro52-specific loops. As mentioned above, loops comprised a DNA axis and an RNP matrix composed of RNA and proteins either common to all transcribed loops or specific of a subset of them. Proteins in the loops can bind to DNA or nascent RNAs either directly or indirectly through protein–protein interactions. This may be the case for the Ro52 protein. Ro52, also referred to as 52-kDa Ro/SSA in clinical practice, is one of the major autoantigens targeted in different autoimmune diseases such the Sjögren’s syndrome (SS) and systemic lupus erythematosus (SLE). It is also named TRIM21 because it belongs to the tripartite motif (TRIM) family of proteins that are characterized by a RING finger domain, a b-box motif and a coiled-coil domain containing a leucine zipper motif. In Ro52, the coiled-coil domain, which is important for cytoplasmic localisation of the protein, is followed by a B30.2 (PRYSPRY) motif in the C-terminal end that is essential for its nuclear translocation (for a review, see Oke and Wahren-Herlenius 2012). Ro52 has been demonstrated to function as a transcription factor (Frank 1999; Wang et al. 2001), and more recently, it has been shown to possess an E3 ligase activity and act in the process of ubiquitinylation (Wada and Kamitani 2006; Espinosa et al. 2008).
We have observed that Ro52, initially detected at similar levels in the cytoplasm and GV of the P. waltl oocyte, accumulated in the GV during in vitro culture. This nuclear translocation could explain the appearance of a strong immunostaining of the large granules accumulated in the RNP matrix of the ‘chaussons’. Simple diffusion is probably not involved in this translocation process because Simons et al. (1994) have shown that the human Ro52 protein microinjected into X. laevis oocytes is translocated into the nucleus via an active transport mechanism. A parallel can be drawn between the nuclear translocation of Ro52 during the in vitro culture of the P. waltl oocyte and its similar translocation reported in mammals where it has been shown to be expressed in most tissues and cells with either a predominantly cytoplasmic or a nuclear location according to the cell type (for review, see Oke and Wahren-Herlenius 2012). Ro52 has also been demonstrated to translocate from the cytoplasm to the cell surface or into the nucleus in apoptotic or stressed cells, as is the case in HeLa cells exposed to extrinsic factors such as NO (Espinosa et al. 2008; for review, see Oke and Wahren-Herlenius 2012).
On the basis of our results, we propose that the dissociation of the amphibian oocyte from the environing maternal tissues and its in vitro culture induces a stress to the oocyte, which triggers the nuclear translocation of Ro52 and its accumulation in association with other proteins such as pol III and Ro RNP particles at the level of specific transcripts where they perform a function related to the metabolism or the degradation of nuclear RNAs. A convergent set of data support this hypothesis. Firstly, the Ro52 protein has been suggested to be associated directly or indirectly with the Ro ribonucleoprotein particles (Ro RNPs; see Fabini et al. 2000) which comprised the Ro60 protein, small YRNAs and the La protein (Wolin and Steitz 1984; Ben-Chetrit et al. 1988). The La protein has been shown to function as a transcription termination factor of pol III (Gottlieb and Steitz 1989) and the small YRNAs are transcribed by pol III. Ro60, another major autoantigen targeted in the autoimmune diseases SS and SLE, is a ring-shaped RNA-binding protein. It has been proposed to be involved in the degradation of misfolded small RNAs and to play an important role in animal cells for adapting RNA metabolism in response to environmental stress (Stein et al. 2005; for a review, see Sim and Wolin 2011). It is noteworthy that after either UV irradiation or oxidative stress, Ro60 undergoes a translocation from the cytoplasm to the nucleus similar to that of Ro52 (Chen et al. 2003; Sim et al. 2009). Secondly, as mentioned above, Ro52 has an E3 ubiquitin ligase activity. Although ubiquitin ligases are best recognized for their role in protein degradation, recent data point to a novel role in the degradation of nucleic acids. This is the case for MEX-3C (Cano et al. 2012) and Roquin (Vinuesa et al. 2005) whose mutation may result in a lupus-like pathology in the mouse. Contrary to MEX-3C and Roquin, Ro52 does not have an RNA-binding domain, but it may play a cofactor role in the degradation of RNAs. Thirdly, we think that the detection of pol III at the level of the subterminal loops of bivalent XII after culture is indicative of its accumulation on these loops and not of its involvement in their transcription. Active sites of pol III transcription corresponding to 5S, tRNA, spliceosomal U snRNAs and other small non-coding RNAs genes are located at the level of lateral loops whose RNP matrix is not detectable in phase-contrast microscopy (Murphy et al. 2002). By comparison, the RNP matrix of the subterminal loops of bivalent XII was clearly visible before culture, and the accumulation of Ro52 and Pol III may thus result from the presence on these loops of transcripts of a peculiar structure, allowing these proteins to be drawn up and accumulated at these sites.
As discussed above, we favour the idea that the accumulation of Ro 52 and pol III proteins we have observed in cultured P. waltl oocytes reveals the storage at these sites of large quantities of the components of a nuclear machinery including Ro RNPs, which provides a quality control of RNA synthesis and maturation in response to cellular stress. It is noteworthy that the association of Ro52 with Ro RNPs is still an open question which had not been resolved by direct biochemical purification approaches (Boire et al. 1995; Fabini et al. 2000). We think that LBCs, and the newt LBCs in particular, provide an invaluable biological system for settling this issue of a general importance for unravelling the relationships and functional role of the Ro proteins and RNPs. New cellular imaging methods have been developed for the study of LBCs, such as the visualisation of LBCs in oil-isolated GVs under in vivo-like conditions (Patel et al. 2008) or the analysis of the distribution of proteins on specific loops by superresolution imaging (Kaufmann et al. 2012). These should provide powerful tools for studying the localisation and dynamics of the different protein partners of the Ro RNPs directly at the level of the loop matrix.
Finally, it can be stressed that the vast majority of studies concerning the biological properties of Ro52 have been carried out on somatic cells so far. In vitro culture of mammalian oocytes is extensively used in ART in humans and animals. Our results raise the question whether the nuclear accumulation of Ro52 occurs also in these oocytes in the course of in vitro fertilization procedures and of what might be the consequences on subsequent foetal development.
We are grateful to Sylviane Muller (I.B.M.C Strasbourg) for the gift of the anti Ro52 antibody and to Robert Roeder for the anti-RPC53 antibody. We thank Nicole Moreau, Ouassila Habi and Samira Asfoura for their contributions at the start of this study and Reiner Veitia for support and discussions.
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