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Can communities cause?

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Abstract

Lynch et al. (Biol Philos, 2019) propose an extremely useful framework to assess microbiome research. By utilising advances in the causation literature, they argue that many of the claims in microbiome research are ‘weak or misleading’ as these claims lack stability, specificity, or proportionality. In the final paragraph before the conclusion they entertain and rapidly dismiss the ‘ecological version’ of microbiomes, in which microbiome properties are emergent from their constituent populations and can fulfil Koch’s postulates. I assess the possibility of microbiomes having emergent causal efficacy on host health and suggest they can.

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References

  • Doak DF, Bigger D, Harding EK, Marvier MA, O’malley RE, Thomson D (1998) The statistical inevitability of stability-diversity relationships in community ecology. Am Nat 151(3):264–276

    Article  Google Scholar 

  • Ereshefsky M, Pedroso M (2013) Biological individuality: the case of biofilms. Biol Philos 28(2):331–349

    Article  Google Scholar 

  • Fischbach MA, Sonnenburg JL (2011) Eating for two: how metabolism establishes interspecies interactions in the gut. Cell Host Microbe 10(4):336–347

    Article  Google Scholar 

  • Flint HJ, Scott KP, Duncan SH, Louis P, Forano E (2012) Microbial degradation of complex carbohydrates in the gut. Gut Microbes 3(4):289–306

    Article  Google Scholar 

  • Lean CH (2018) Indexically structured ecological communities. Philos Sci 85(3):501–522

    Article  Google Scholar 

  • Liu L, Chen X, Skogerbø G, Zhang P, Chen R, He S, Huang D-W (2012) The human microbiome: a hot spot of microbial horizontal gene transfer. Genomics 100(5):265–270

    Article  Google Scholar 

  • Lynch KE, Parke EC, O’Malley MA (2019) How causal are microbiomes? A comparison with the Helicobacter pylori explanation of ulcers. Biol Philos

  • Matias M, Combe M, Barbera C, Mouquet N (2013) Ecological strategies shape the insurance potential of biodiversity. Front Microbiol 3:432

    Article  Google Scholar 

  • Morris JJ, Lenski RE, Zinser ER (2012) The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss. MBio 3(2):e00036-12

    Article  Google Scholar 

  • Scheuring I, Yu DW (2012) How to assemble a beneficial microbiome in three easy steps. Ecol Lett 15(11):1300–1307

    Article  Google Scholar 

  • Sterelny K (2005) The elusive synthesis. In: Cuddington K, Beisner B (eds) Ecological paradigms lost: routes of theory change, vol 2. Elsevier, Amsterdam, pp 311–329

    Chapter  Google Scholar 

  • Tilman D, Downing JA (1994) Biodiversity and stability in grasslands. Nature 367(6461):363

    Article  Google Scholar 

Download references

Acknowledgements

I would like to thank Derek Skillings for a helpful discussion on the response. Work on this paper was supported by an Australian Research Council Discovery Grant (Grant Number DP170104924).

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Correspondence to Christopher Hunter Lean.

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Lean, C.H. Can communities cause?. Biol Philos 34, 59 (2019). https://doi.org/10.1007/s10539-019-9715-x

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