Cells as irreducible wholes: the failure of mechanism and the possibility of an organicist revival
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Abstract
According to vitalism, living organisms differ from machines and all other inanimate objects by being endowed with an indwelling immaterial directive agency, ‘vital force,’ or entelechy. While support for vitalism fell away in the late nineteenth century many biologists in the early twentieth century embraced a non vitalist philosophy variously termed organicism/holism/emergentism which aimed at replacing the actions of an immaterial spirit with what was seen as an equivalent but perfectly natural agency—the emergent autonomous activity of the whole organism. Organicists hold that organisms unlike machines are ‘more than the sum of their parts’ and predict that the vital properties of living things can never be explained in terms of mechanical analogies and that the reductionist agenda is doomed to failure. Here we review the current status of the mechanist and organicist conceptions of life particularly as they apply to the cell. We argue that despite the advances in biological knowledge over the past six decades since the molecular biological revolution, especially in the fields of genetics and cell biology the unique properties of living cells have still not been simulated in mechanical systems nor yielded to reductionist—analytical explanations. And we conclude that despite the dominance of the mechanistic–reductionist paradigm through most of the past century the possibility of a twentyfirst century organicist revival cannot be easily discounted.
Keywords
Vitalism Holism organicism Sentience Self organizationReferences
- Agar WE (1943) A contribution to the theory of the living organism. Melbourne University Press, MelbourneGoogle Scholar
- Ainsworth C (2009) Cells go fractal. Nature News published on line 4 Sept. doi: 10.1038/news.2009.880
- Alberts B et al (2007) Molecular biology of the cell. Garland Press, NYGoogle Scholar
- Alexander S (1920) Space, time, and deity. Macmillan, LondonGoogle Scholar
- Anderson PW (1972) More is different. Science 177:393–396CrossRefGoogle Scholar
- Aon MA, O’Bourke B, Cortassa S (2004) The fractal architecture of cytoplasmic organization: scaling, kinetics, and emergence in metabolic networks. Mol Cell Biochem 256(257):169–184CrossRefGoogle Scholar
- Aristotle (1937) Parts of animals. English translation by A. L. Peck. Heinemann, LondonGoogle Scholar
- Beckner M (1967) Organismic biology. In: Paul E (ed) Encyclopedia of philosophy, vol 5. MacMillan Publishing Inc.\The Free Press, NY, pp 549–551Google Scholar
- Bedau M (2002) Downward causation and the anatomy of weak emergence. Principia 6:5–50Google Scholar
- Bertalanffy VL (1969) General systems theory, foundations, development, applications. George Braziller, NYGoogle Scholar
- Brandon C, Tooze J (1999) Introduction to protein structure, 2nd edn. Garland Publishing Inc., NYGoogle Scholar
- Broad CD (1925) The mind and its place in nature. Kegan Paul, LondonGoogle Scholar
- Camazine S, Deneubourg J-L, Franks NR, Theraulaz G, Bonabeau E (2001) Self-organization in biological systems. Princeton University Press, PrincetonGoogle Scholar
- Carelli PV, Reyes MB, Sartorelli JC, Pinto RD (2005) Whole cell stochastic model reproduces the irregularities found in the membrane potential of bursting. Neurons J Neurophysiol 94:1169–1179CrossRefGoogle Scholar
- Chalmers DJ (2006) Strong and weak emergence. In: Clayton P, Davies PCW (eds) The reemergence of emergence; the emergentist hypothesis from science and religion. Oxford University Press, Oxford, pp 244–255Google Scholar
- Chialvo DR (2010) Emergent complex neural dynamic. Nat Phys 6:744–750CrossRefGoogle Scholar
- Clark KB (2010) Origins od learned reciprocity in solitary ciliates searching groups ‘courting’ assurances at quantum efficiencies. Biosysystems 99:27–41Google Scholar
- Clayton P (2004) Mind and emergence: from quantum to consciousness. Oxford University Press, OxfordGoogle Scholar
- Clayton P (2006) The conceptual foundations of emergence theory. In: Clayton P, Davies PCW (eds) The re-emergence of emergence: the emergentist hypothesis from science to religion. Oxford University Press, Oxford, pp 1–25Google Scholar
- Clayton NS, Emery NJ (2008) Clever corvids and political primates. In: Morris SC (ed) The deep structure of biology. Templeton Foundation Press, PennslyvaniaGoogle Scholar
- Collins J (2010) Got parts, need manual. Nature 465:424Google Scholar
- Crick FC (1957) On protein synthesis. Symp Soc Exp Biol 12:138–163Google Scholar
- Crick F (2004) Of molecules and men. Prometheus Books, NYGoogle Scholar
- Davies PCW (2006) The physics of downward causation. In: Clayton P, Davies PCW (eds) The reemergence of emergence; the emergentist hypothesis from science and religion. Oxford University Press, Oxford, pp 35–51Google Scholar
- Descartes (1985) Principles of philosophy. In: The philosophical writings of Descartes, vol 1 (Trans: Cottingham J, Stoothhoff R, Murdoch D). Cambridge University Press, CambridgeGoogle Scholar
- Drexler E (1986) The engines of creation. Ancor Press, NYGoogle Scholar
- Driesch H (1914) The history and theory of vitalism. Macmillan, LondonGoogle Scholar
- Driesch H (1929) The science and philosophy of the organism. A. and C. Black, LondonGoogle Scholar
- Dupont C, Randall AD, Brenner CA (2009) Epigenetics: definitions mechanism and clinical perspectives. Semin Reprod Med 27:351–357CrossRefGoogle Scholar
- Eccleston A, DeWitt N, Gunter C, Marte B, Noth D (eds) (2007) Epigenetics. Nat Insights Epigenet 447:396–440Google Scholar
- Edelmann J, Denton MJ (2007) The uniqueness of biological self organization: challenging the Darwinian paradigm. Biol Philos 22:579–601CrossRefGoogle Scholar
- Fletcher DA, Mullins RD (2010) Cell mechanics and the cytoskeleton. Nature 463:485–492CrossRefGoogle Scholar
- Ford BJ (2010) The secret power of the single cell. New Sci (2757):26–27Google Scholar
- Forgacs G, Newman SA (2005) The biological physics of the developing embryo. CUP, NYCrossRefGoogle Scholar
- Gierasch LM, Gershenson A (2009) Post-reductionist protein science, or putting Humpty–Dumpty back together again. Nat Chem Biol 11:774–777CrossRefGoogle Scholar
- Gilbert SF, Sarkar S (2000) Embracing complexity: organicism for the 21st century. Dev Dyn 219:1–9CrossRefGoogle Scholar
- Gleick J (1998) Chaos. Vintage Press, LondonGoogle Scholar
- Goldberg AD, ALLis CD, Berstein E (2007) Epigenetics: a landscape takes shape. Cell 128:635–638Google Scholar
- Gould SJ (2002) The structure of evolutionary theory. Harvard University Press, CambridgeGoogle Scholar
- Gribben J (2005) Deep simplicity. Penguin Books, LondonGoogle Scholar
- Haig D (2004) The (dual) origins of epigenetics. Cold Spring Harb Symp Quant Biol 69:67–71CrossRefGoogle Scholar
- Haken H (1977) Synergetics: an introduction. Nonequilibrium phase transitions and self-organization in physics chemistry and biology. Springer, NYGoogle Scholar
- Harold F (2005a) To shape a cell: an enquiry into the causes of morphogenesis of microorganisms. Microbiol Rev 54:381–431Google Scholar
- Harold F (2005b) Molecules into cells: specifying spatial architecture. Micro Mol Biol Rev 69:544–564Google Scholar
- Hayden EC (2010) Life is complicated. Nature 464:664–667CrossRefGoogle Scholar
- Hofstadter DR (1999) Gödel, Escher, Bach. Basic Books, NYGoogle Scholar
- Hyman AA, Karsenti E (1996) Morphogenetic properties of microtubules and mitotic spindle assembly. Cell 84:401–410CrossRefGoogle Scholar
- Jennings HS (1906/1976) Behavior of the lower organisms. Indiana University Press, BloomingtonGoogle Scholar
- Jirtle RL, Skinner MK (2007) Environmental epigenomics and disease susceptibility. Nat Rev Genet 8:253–262CrossRefGoogle Scholar
- Johannsen W (1923) Some remarks about heredity. Hereditas 4:133–141Google Scholar
- Jonas H (2001) The phenomenon of life. North Western University Press, ILGoogle Scholar
- Judson HF (1979) The eighth day of creation. CSHL Press, PlainviewGoogle Scholar
- Kant I (2010) Critique of judgement. Digireads, KSGoogle Scholar
- Karsenti E (2008) Self-organization in cell biology: a brief history. Nat Rev Mol Cell Biol 9:255–262CrossRefGoogle Scholar
- Kauffman SA (2000) Investigations. Oxford University Press, NYGoogle Scholar
- Keller EF (2000) The century of the gene. Harvard University Press, CambridgeGoogle Scholar
- Kelly EF (2007) Introduction. In: Kelly EF, Kelly EW (eds) Irreducible mind. Rowman and Littlefield, MDGoogle Scholar
- Keren K, Pinccus Z, Allen GM, Barnhart EL, Marriot G, Mogilner A, Theriot JA (2008) Mechanism of shape determination in motile cells. Nature 453:475–480CrossRefGoogle Scholar
- Kim J (1999) Making sense of emergence. Philos Stud 95:3–36CrossRefGoogle Scholar
- Kim J (2005) Physicalism, or something near enough. Princeton University Press, PrincetonGoogle Scholar
- Kirschner M, Mitchison T (1986) Beyond self-assembly: from microtubules to morphogenesis. Cell 45:329–342CrossRefGoogle Scholar
- Kitano H (2002) Computational systems biology. Nature 420:206–210CrossRefGoogle Scholar
- Koestler A (1990) The ghost in the machine. Penguin, LondonGoogle Scholar
- Kuhn TS (1962) The structure of scientific revolutions. University of Chicago Press, ChicagoGoogle Scholar
- Lanza R, Gearhart J, Hogan B, Melton D, Pedersen R, Thomas ED, Thompson J, Wilmut I (2009) Essentials of stem cell biology. Academic Press, NYGoogle Scholar
- Laughlin RB, Pines D, Schamlian J, Stojkovic BP, Wolynes P (2000) The middle way. Proc Natl Acad Sci USA 97:32–37CrossRefGoogle Scholar
- Lazarides E (1987) From genes to structural morphogenesis: the genesis and epigenesis of a red blood cell. Cell 51:345–356CrossRefGoogle Scholar
- Lear J (1988) Aristotle: the desire to understand. Cambridge University Press, CambridgeCrossRefGoogle Scholar
- Lehn JM (2002) Towards self-organization and complex matter. Science 295:2400–2403CrossRefGoogle Scholar
- Lewin R (1992) Complexity. Macmillan Press, NYGoogle Scholar
- Li M, Wang IX, Li Y, Bruzel A, Richards AL, Toung JM, Cheung VG (2011) Widespread RNA and DNA sequence differences in the human transcriptome. Science 333:53–58Google Scholar
- Lopez J, Percharde M, Coley HM, Webb A, Crook I (2009) The context and potential of epigenetics in ocology. Br J Cancer 100:571–577CrossRefGoogle Scholar
- Maher B (2008) Personal genomes: the case of the missing hereditability. Nature 456:18–21CrossRefGoogle Scholar
- Mayer BJ, Blinoy ML, Loew LM (2009) Molecular machines or pleiomorphic ensembles: signaling complexes revisited. J Biol 8:81.1–81.8. doi: 10.1186/jbiol185 CrossRefGoogle Scholar
- McDougall W (1938) The riddle of life. Methuen, LondonGoogle Scholar
- Misteli T (2001) The concept of self organization in cellular architecture. J Cell Biol 155:181–185CrossRefGoogle Scholar
- Misteli T (2009) Self organization in the genome. Proc Nat Acad Sci USA 106:6885–6886CrossRefGoogle Scholar
- Monod J (1972) Chance and necessity. Collins, LondonGoogle Scholar
- Morgan Lloyd C (1923) Emergent evolution. Williams and Norgate, LondonGoogle Scholar
- Morrison M (2006) Emergence, reduction and theoretical principles: rethinking fundamentalism. Philos Sci 73:876–887CrossRefGoogle Scholar
- Nanney DL (1957) The role of the cytoplasm in heredity. In: McElroy WD, Glass B (eds) The chemical basis of heredity. Johns Hopkins University Press, Baltimore, pp 134–163Google Scholar
- Nanney DL (1958) Epigenetic control systems. Proc Natl Acad Sci USA 44:712–717CrossRefGoogle Scholar
- Nedelec FJ, Surrey T, Maggs AC, Liebler S (1997) Self-organization of microtubules and motors. Nature 389:305–308CrossRefGoogle Scholar
- Nijhout HF (1990) Metaphors and the role of genes in development. Bioessays 12:441–446CrossRefGoogle Scholar
- Nijhout FH (1999) When developmental pathways diverge. PNAS US 96:5348–5350CrossRefGoogle Scholar
- Nilsen TW, Graveley BR (2010) Expansion of the eukaryotic proteome by alternative splicing. Nature 463:457–463Google Scholar
- Perdew GH, Vanden Heuvel JP, Peters JM (2006) Regulation of gene expression: molecular mechanisms. Humana Press, TotowaGoogle Scholar
- Platt JR (1961) Properties of large molecules that go beyond the properties of their chemical subgroups. J Theoret Biol 1:342–358Google Scholar
- Rajapakse I, Perlmanc MD, Scalzoa D, Kooperbergb C, Groudinea M, Kosake ST (2009) The emergence of lineage-specific chromosomal topologies from coordinate gene regulation. Proc Natl Acad Sci USA 106:6679–6684CrossRefGoogle Scholar
- Rhind SM, Taylor JE, De Sousa PA, King TJ, McGrary M, Wilmut I (2003) Human cloning: can it be made safe. Nat Rev Genet 4:855–864CrossRefGoogle Scholar
- Rickles D (2006) Supervenience and determination. Internet Encyclopedia of Philosophy. http://www.iep.utm.edu/superven/
- Ridley M (2007) Thinker: Francis Crick. New Humanist 122(1):6Google Scholar
- Ritter WE (1919) The unity of the organism, or the organismal conception of life. Gorham Press, BostonCrossRefGoogle Scholar
- Roll-Hansen N (1984) E. S. Russell and J. H. Woodger: the failure of two twentieth-century opponents of mechanistic biology. J Hist Biol 17:399–428Google Scholar
- Russell ES (1930) The interpretation of development and heredity. Oxford University Press, OxfordGoogle Scholar
- Searle J (1992) The rediscovery of the mind. MIT Press, CambridgeGoogle Scholar
- Sherrington C (1963) Man on his nature. Cambridge University Press, CambridgeGoogle Scholar
- Shinbrot T, Muzzio FJ (2001) Noise to order. Nature 410:251–258CrossRefGoogle Scholar
- Silberstein M, McGeever J (1999) The search for ontological emergence. Philos Q 49:182–200CrossRefGoogle Scholar
- Sipper M, Reggia JA (2001) Go forth and replicate. Sci Am 285:34–43CrossRefGoogle Scholar
- Smith A-S (2010) Physics challenged by cells. Nat Phys 6:726–729CrossRefGoogle Scholar
- Smuts J (1927) Holism and evolution. Macmillan Press, LondonGoogle Scholar
- Strohman RC (1993) Ancient genes, wise bodies, unhealthy people: limits of genetic thinking in biological medicine. Perspect Biol Med 37:112–144Google Scholar
- Sowerby SJ, Holm NG, Petersen GB (2001) Origins of life: a route to nanotechnology. Biosystems 61:69–78CrossRefGoogle Scholar
- Strogatz SH (1994) Non linear dynamics and chaos. Perseus Books, NYGoogle Scholar
- Tartar V (1961) The biology of Stentor. Pergammon Press, LondonGoogle Scholar
- Taylor E (2001) E.B. Wilson lecture: the cell as a molecular machine. Mol Biol Cell 12(2):251–254Google Scholar
- Thompson DW (1942) On growth and form, 2nd edn. Cambridge University Press, CambridgeGoogle Scholar
- von Neumann J (1966) Theory of self-reproducing automata. University of Illinois Press, UrbanaGoogle Scholar
- Waddington CH (1956) Embryology, epigenetics and biogenetics. Nature 177:1241CrossRefGoogle Scholar
- Waddington CH (1962) New patterns on genetics and development. Columbia Press, New YorkGoogle Scholar
- Watson JD (2003) DNA: the secret of life. Heinemann, LondonGoogle Scholar
- Weismann A (1904) The evolution theory. Edward Arnold, LondonGoogle Scholar
- Weiss P (1963) The cell as unit. J Theor Biol 5:389–397CrossRefGoogle Scholar
- Weiss P (1969) The living system: determinism stratified. In: Koestler A, Smythies JR (eds) Beyond reductionism. Hutchinson and Co, UK, pp 3–55Google Scholar
- Welch GR, Clegg JS (2010) From protoplasmic theory to cellular systems biology: a 150-year reflection. Am J Physiol Cell Physiol 298:C1280–C1290CrossRefGoogle Scholar
- Whitehead AN (1927) Science and the modern world. Cambridge University press, CambridgeGoogle Scholar
- Whitesides GM, Grzybowski B (2002) Self-assembly at all scales. Science 295:2418–2421CrossRefGoogle Scholar
- Wolpert L, Lewis J (1975) Towards a theory of development. Fed Proc 34:14–20Google Scholar
- Woodger JH (1929) Biological principles: a critical study. Paul Trench Trubner and Co, LondonGoogle Scholar
- Yates FE (1994) Order and complexity in dynamical systems: homeodynamics as a generalized mechanics for biology. Math Comput Model 19:49–74CrossRefGoogle Scholar
- Yerkes RM (1905) Animal psychology and criteria of the psychic. J Philos Psychol Sci Method 2:141–149Google Scholar