Biology and Philosophy

, Volume 21, Issue 4, pp 471–499 | Cite as

Parts and Theories in Compositional Biology

Article

Abstract

I analyze the importance of parts in the style of biological theorizing that I call compositional biology. I do this by investigating various aspects, including partitioning frames and explanatory accounts, of the theoretical perspectives that fall under and are guided by compositional biology. I ground this general examination in a comparative analysis of three different disciplines with their associated compositional theoretical perspectives: comparative morphology, functional morphology, and developmental biology. I glean data for this analysis from canonical textbooks and defend the use of such texts for the philosophy of science. I end with a discussion of the importance of recognizing formal and compositional biology as two genuinely different ways of doing biology – the differences arising more from their distinct methodologies than from scientific discipline included or natural domain studied. Ultimately, developing a translation manual between the two styles would be desirable as they currently are, at times, in conflict.

Keywords

Compositional biology Developmental biology Morphology Parts Science textbook Style of theorizing Theoretical perspective 

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References

  1. Allen C, Bekoff M, Lauder GV (eds) (1997). Nature’s Purposes: Analyses of Function and Design in Biology. Cambridge, MA, MIT PressGoogle Scholar
  2. Amundson R, Lauder GV (1994). Function Without Purpose: The Uses of Causal Role Function in Evolutionary Biology. Biology and Philosophy 9:443–469CrossRefGoogle Scholar
  3. Ariew A, Cummins R, Perlman M (eds) (2002). Functions. New Essays in the Philosophy of Psychology and Biology. Oxford, UK, Oxford University PressGoogle Scholar
  4. Baron C (1991). What Functional Morphology Cannot Explain: A Model of Sea Urchin Growth and a Discussion of the Role of Morphogenetic Explanations in Evolutionary Biology. In: Dudley EC (eds) The Unity of Evolutionary Biology. Portland, OR, Dioscorides Press, pp. 471–88Google Scholar
  5. Bechtel W, Richardson RC (1993). Discovering Complexity: Decomposition and Localization as Strategies in Scientific Research. Princeton, Princeton University PressGoogle Scholar
  6. Bolker JA (2000). Modularity in development and why it matters to Evo-Devo. American Zoologist 40:770–776CrossRefGoogle Scholar
  7. Bramble DM, Wake D (1985). Feeding Mechanisms of Lower Tetrapods. In: Hildebrand M, Bramble DM, Liem KF, Wake D (eds) Functional Vertebrate Morphology. Cambridge, MA, Harvard University Press, pp. 230–61Google Scholar
  8. Buss L. 1987. The Evolution of Individuality, Princeton University Press, PrincetonGoogle Scholar
  9. Colyvan M (2001b). The Indispensability of Mathematics. New York, Oxford University PressGoogle Scholar
  10. Coyne JA, Barton NH, Turelli M (1997). Perspective: a Critique of Sewall Wright’s Shifting Balance Theory of Evolution. Evolution 51:643–71CrossRefGoogle Scholar
  11. Coyne JA, Barton NH, Turelli M (2000). Is Wright’s Shifting Balance Process Important in Evolution? Evolution 54:306–17CrossRefGoogle Scholar
  12. Craver CF (2001). Role Functions, Mechanisms, and Hierarchy. Philosophy of Science 68:53–74CrossRefGoogle Scholar
  13. Crombie A (1994). Styles of Scientific Thinking in the European Tradition. 3 vols. London, DuckworthGoogle Scholar
  14. Cummins R (1975). Functional Analysis. The Journal of Philosophy 72:741–65CrossRefGoogle Scholar
  15. Cummins R (1983). The Nature of Psychological Explanation. Cambridge, MA, MIT PressGoogle Scholar
  16. Danto AC (1985). Narration and Knowledge. New York, Columbia University PressGoogle Scholar
  17. Gerson E.M. 1998. The American System of Research: Evolutionary Biology, 1890–1950. Department of Sociology Dissertation, University of ChicagoGoogle Scholar
  18. Gilbert S (1997). Developmental Biology 5th ed. Sunderland, MA, Sinauer Associates PublishersGoogle Scholar
  19. Glennan S (1996). Mechanisms and the Nature of Causation. Erkenntnis 44:49–71CrossRefGoogle Scholar
  20. Glennan S (2002). Rethinking Mechanistic Explanation. Philosophy of Science 69:S342–S353CrossRefGoogle Scholar
  21. Godfrey-Smith P (1993). Functions: consensus Without Unity. Pacific Philosophical Quarterly 74:196–208Google Scholar
  22. Goodnight CJ, Wade MJ (2000). The Ongoing Synthesis: A Reply to Coyne, Barton, and Turelli. Evolution 54:317–24CrossRefGoogle Scholar
  23. Goodwin BC (1989). Evolution and the Generative Order. In: Goodwin BC, Saunders PT (eds) Theoretical Biology. Epigenetic and Evolutionary Order from Complex Systems. Edinburgh, Edinburgh University Press, pp. 89–100Google Scholar
  24. Goodwin BC (1994). How the Leopard Changed Its Spots. New York, Simon & SchusterGoogle Scholar
  25. Griesemer JR (1990). Modeling in the Museum: On the Role of Remnant Models in the Work of Joseph Grinnell. Biology and Philosophy 5:3–36CrossRefGoogle Scholar
  26. Griesemer JR (1991a). Material Models in Biology. PSA 1990 2:79–93Google Scholar
  27. Griesemer JR (1991b). Must Scientific Diagrams be Eliminable? The Case of Path Analysis. Biology and Philosophy 6:155–80CrossRefGoogle Scholar
  28. Griesemer JR (1996). Periodization and Models in Historical Biology. In: Ghiselin MT, Pinna G (eds) New Perspectives on the History of Life. San Francisco, California Academy of Sciences, pp. 19–30Google Scholar
  29. Griesemer JR (2000). Development, Culture, and the Units of Inheritance. Philosophy of Science 67(Proceedings): S348–68CrossRefGoogle Scholar
  30. Griesemer J.R. 2004. Genetics from an evolutionary process perspective. In: Neumann-Held E.M., Rehmann-Sutter C. (eds.), Genes in Development. Duke University Press, (Chapter 8, pp. 343–375)Google Scholar
  31. Griesemer JR, Wimsatt WC (1989). Picturing Weismannism: A Case Study of Conceptual Evolution. In: Ruse M, (eds) What Philosophy of Biology Is. Essays dedicated to David Hull. Kluwer Academic Publishers, Dordrecht, Netherlands, pp. 75–137Google Scholar
  32. Griffiths PE (1993). Functional Analysis and Proper Function. British Journal for Philosophy of Science 44:409–422Google Scholar
  33. Hacking I. 1994. Styles of scientific thinking or reasoning: a new analytical tool for historians and philosophers of the sciences. In: Gavroglu K., Christianidis J. and Nicolaidis E. (eds), Trends in␣the Historiography of Science, Kluwer Academic Publishers, Dordrecht, Netherlands, pp. 31–48Google Scholar
  34. Hacking I (2002). Historical Ontology. Cambridge, MA, Cambridge University PressGoogle Scholar
  35. Haugeland J (1998). The Nature and Plausibility of Cognitivism (1978). In: Haugeland J, (eds) Having Thought. Essays in the Metaphysics of Mind. Cambridge, MA, Harvard University Press, pp. 9–45Google Scholar
  36. Hildebrand M (1985). Walking and Running. In: Hildebrand M, Bramble DM, Liem KF, Wake D (eds) Functional Vertebrate Morphology. Cambridge, MA, Harvard University Press, pp. 38–57Google Scholar
  37. Hildebrand M, Bramble DM, Liem KF, Wake D, (eds) (1985). Functional Vertebrate Morphology. Cambridge, MA, Harvard University PressGoogle Scholar
  38. Hull DL (1975). Central Subjects and Historical Narratives. History and Theory 14:253–74CrossRefGoogle Scholar
  39. Hull DL (1981). Historical Narratives and Integrating Explanations. In: Sumner LW, Slater JG, Wilson F (eds) Pragmatism and Purpose. Essays Presented to Thomas A. Goudge. Toronto, University of Toronto Press, pp. 172–88Google Scholar
  40. Hull DL (1992). The Particular-Circumstance Model of Scientific Explanation. In: Nitecki MH, Nitecki DV (eds) History and Evolution. Albany, New York, SUNY Press, pp. 69–80Google Scholar
  41. Hyman LH (1942). Comparative Vertebrate Anatomy 2nd ed. Chicago, University of Chicago PressGoogle Scholar
  42. Kauffman SA (1971). Articulation of Parts Explanation in Biology and the Rational Search for Them. Boston Studies in the Philosophy of Science 8:257–72Google Scholar
  43. Kauffman SA (1993). The Origins of Order: Self-Organization and Selection in Evolution. Oxford University Press, Oxford, U. KGoogle Scholar
  44. Kuhn TS (1970). The Structure of Scientific Revolutions 2nd ed. Chicago, University of Chicago PressGoogle Scholar
  45. Lauder GV (1990). Functional Morphology: Studying Functional Patterns in an Historical Context. Annual Review of Ecology and Systematics 21:317–40CrossRefGoogle Scholar
  46. Levins R, Lewontin RC (1985). The Dialectical Biologist. Cambridge, MA, Harvard University PressGoogle Scholar
  47. Lewontin RC, Levins R (1988). Aspects of Wholes and Parts in Population Biology. In: Greenberg G, Tobach E (eds) Evolution of Social Behavior and Integrative Levels. Hillsdale, New Jersey, Lawrence Erlbaum Associates, Publishers, pp. 31–52Google Scholar
  48. Liem KF, Wake DB (1985). Morphology: Current Approaches and Concepts. In: Hildebrand M, Bramble DM, Liem KF, Wake D (eds) Functional Vertebrate Morphology. Cambridge, MA, Harvard University Press, pp. 366–377Google Scholar
  49. Lundgren A, Bensaude-Vincent B (eds) (2000). Communicating Chemistry Textbooks and their Audiences, 1789–1939. Canton, MA, Watson Publishing InternationalGoogle Scholar
  50. Machamer P, Darden L, Craver CF (2000). Thinking About Mechanisms. Philosophy of Science 67:1–25CrossRefGoogle Scholar
  51. Maddy P (1997). Naturalism in Mathematics. Oxford, U.K., Oxford University PressGoogle Scholar
  52. Maturana H, Varela FJ (1980). Autopoiesis and Cognition. Vol. 42. Boston Studies in the Philosophy of Science. Dordrecht, Reidel Publishing CompanyGoogle Scholar
  53. McLaughlin P (1997). What Functions Explain. Functional Explanation and Self-Reproducing Systems. Cambridge, UK, Cambridge University PressGoogle Scholar
  54. McShea DW (2000). Functional Complexity in Organisms: Parts as Proxies. Biology and Philosophy 15:641–68CrossRefGoogle Scholar
  55. McShea DW, Venit EP (2001). What is a Part?. In: Wagner GP (eds) The Character Concept in Evolutionary Biology. San Diego, Academic Press, pp. 259–84Google Scholar
  56. Millikan RG (1984). Language, Thought & Other Biological Categories. Cambridge, MA, MIT PressGoogle Scholar
  57. Nagel E (1961). The Structure of Science. Problems in the Logic of Scientific Explanation. New York, Harcourt Brace College PublishersGoogle Scholar
  58. O’Hara RJ (1996). Mapping the Space of Time: Temporal Representation in the Historical Sciences. In: Ghiselin MT, Pinna G (eds) New Perspectives on the History of Life. California Academy of Sciences, San Francisco, pp. 7–17Google Scholar
  59. Oyama S (2000a). The Ontogeny of Information 2nd ed. Durham, N.C., Duke University PressGoogle Scholar
  60. Oyama S (2000b). Evolution’s Eye. A Systems View of the Biology-Culture Divide. Durham, N.C., Duke University PressGoogle Scholar
  61. Oyama S, Griffiths P, Gray P (eds) (2001). Cycles of Contingency. Developmental Systems and Evolution. Cambridge, MA, MIT PressGoogle Scholar
  62. Plutynski A (2001). Modeling Evolution in Theory and Practice. Philosophy of Science 68(Proceedings):S225–S236CrossRefGoogle Scholar
  63. Raff RA (1996). The Shape of Life. Genes, Development, and the Evolution of Animal Form. Chicago, University of Chicago PressGoogle Scholar
  64. Richards RJ (1981). Natural Selection and Other Models in the Historiography of Science. In: Brewer MB, Collins BE (eds) Scientific Inquiry and the Social Sciences. San Francisco, Jossey-Bass Publishers, pp. 37–76Google Scholar
  65. Richards RJ (1992). The Structure of Narrative Explanation in History and Biology. In: Nitecki MH, Nitecki DV (eds) History and Evolution. Albany, New York, SUNY Press, pp. 19–53Google Scholar
  66. Rieppel O (2005). Modules, Kinds, and Homology. Journal of Experimental Zoology (Molecular and Developmental Evolution) 304B:18–27CrossRefGoogle Scholar
  67. Sober E (1993). Mathematics and Indispensability. Philosophical Review 102(1):35–57CrossRefGoogle Scholar
  68. Steiner M (1998). The Applicability of Mathematics as a Philosophical Problem. Cambridge, MA, Harvard University PressGoogle Scholar
  69. Sterelny K, Griffiths P (1999). Sex and Death. An Introduction to Philosophy of Biology. Chicago, University of Chicago PressGoogle Scholar
  70. van der Weele C (1995). Images of Development Environmental Causes in Ontogeny. Department of Theoretical Biology Dissertation, Vrije Universiteit, AmsterdamGoogle Scholar
  71. Wade MJ, Goodnight CJ (1998). Perspective: The Theories of Fisher and Wright in the Context of Metapopulations: When Nature Does Many Small Experiments. Evolution 52:1537–53CrossRefGoogle Scholar
  72. Wagner GP (1996). Homologues, Natural Kinds and the Evolution of Modularity. American Zoologist 36:36–43Google Scholar
  73. Wagner GP (2001). Characters, units, and natural kinds. In: Wagner GP (eds) The Character Concept in Evolutionary Biology. San Diego, CA, Academic Press, pp. 1–10Google Scholar
  74. Wagner GP, Altenberg L (1996). Complex Adaptations and the Evolution of Evolvability. Evolution 50:967–976CrossRefGoogle Scholar
  75. Wake M (eds) (1979). Hyman’s Comparative Vertebrate Anatomy. 3rd ed. Chicago, University of Chicago PressGoogle Scholar
  76. Wake M (1992). Morphology, the study of form and function, in modern evolutionary biology. Oxford Surveys in Evolutionary Biology 8:289–346Google Scholar
  77. Webb PW, Blake RW (1985). Swimming. In: Hildebrand M, Bramble DM, Liem KF, Wake D (eds) Functional Vertebrate Morphology. Cambridge, MA, Harvard University Press, pp. 110–28Google Scholar
  78. Wimsatt WC (1972). Teleology and the Logical Structure of Function Statements. Studies in History and Philosophy of Science 3:1–80CrossRefGoogle Scholar
  79. Wimsatt WC (1974). Complexity and Organization. PSA 1972 1: 67–86Google Scholar
  80. Wimsatt WC (1980). Reductionist Research Strategies and Their Biases in the Units of Selection Controversy. In: Nickles T (eds) Scientific Discovery. Volume 2: Case Studies. Dordrecht, Netherlands, Reidel Publishing Company, pp. 213–259Google Scholar
  81. Wimsatt WC (1986). Forms of Aggregativity. In: Donogan A, Perovich N Jr., Wedin M (eds) Human Nature and Natural Knowledge. Dordrecht, Netherlands, Reidel Publishing Company, pp. 259–291Google Scholar
  82. Wimsatt WC (1994). The Ontology of Complex Systems: Levels of Organization, Perspectives, and Causal Thickets. Canadian Journal of Philosophy 20(supplement):207–74Google Scholar
  83. Wimsatt WC (1997). Functional Organization, Functional Analogy, and Functional Inference. Evolution and Cognition 3:102–132Google Scholar
  84. Winther RG (2001a). Varieties of Modules: Kinds, Levels, Origins and Behaviors. Journal of Experimental Zoology (Mol. Develop. Evol.) 291:116–29CrossRefGoogle Scholar
  85. Winther RG (2001b). August Weismann on Germ-Plasm Variation. Journal of the History of Biology 34:517–55CrossRefGoogle Scholar
  86. Winther R.G. 2003. Formal Biology and Compositional Biology as Two Kinds of Biological Theorizing. Department of History and Philosophy of Science Dissertation, Indiana UniversityGoogle Scholar
  87. Wimsatt WC (2005). Evolutionary Developmental Biology Meets Levels of Selection: Modular Integration or Competition, or Both?. In: Rasskin-Gutman D, Callebaut W (eds) Modularity: Understanding the Development and Evolution of Natural Complex Systems. Cambridge, MA, MIT Press, pp. 61–97Google Scholar
  88. Winther R.G. 2006. Fisherian and Wrightian perspectives in evolutionary genetics and model-mediated imposition of theoretical assumptions. J. Theo. Biol. 240: 218–232.Google Scholar
  89. Wright L (1973). Functions. Philosophical Review 82:139–68CrossRefGoogle Scholar

Copyright information

© Springer Science+Business Media, Inc. 2006

Authors and Affiliations

  1. 1.Instituto de Investigaciones FilosóficasUniversidad Nacional Autónoma de México, Circuito Mario de la Cueva, Ciudad Universitaria, CoyoacánMéxico D.F.México

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