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Genome-wide identification and cadmium induced expression profiling of sulfate transporter (SULTR) genes in sorghum (Sorghum bicolor L.)

BioMetals volume 31, pages 91–105 (2018)Cite this article

Abstract

Sulfur is an essential element for all living organisms. Plants can convert inorganic sulfur into organic sulfur compounds by complex enzymatic steps. In this study, we conducted a genome-wide analysis of sulfate transporter genes (SULTRs) in the sorghum (Sorghum bicolor) genome and examined expression profiles of SbSULTR genes under 200 µM cadmium (Cd) exposure. As a result of sorghum genome analysis, 11 SULTR genes were identified, including SbSULTR1;1, SbSULTR1;2, SbSULTR1;3, SbSULTR2;1, SbSULTR2;2, SbSULTR3;1, SbSULTR3;2, SbSULTR3;3, SbSULTR3;4, SbSULTR3;5, and SbSULTR4. Given names are based on phylogeny and chromosomal locations. Except SbSULTR4, all SbSULTR proteins contained Sulfate_transp (PF00916), STAS (PF01740) domains and 12 trans-membrane domains. Phylogenetic analysis revealed that four major groups were identified such as SULTR1, 2, 3, and 4 groups and SULTR4 group was separated to other SULTR groups. In promotor sequences of SbSULTR genes, many diverse cis-acting elements were found mainly related with physiological processes such as light, stress and hormone responsiveness. The expression profiles of SbSULTR genes showed that SULTR1;2, 1;3, 3;3, and 3;5 genes up-regulated in root, while expression level of SULTR4 decreased under 200 µM Cd exposure. The predicted 3D structures of SULTR proteins showed some conformational changes, suggesting functional diversities of SbSULTRs. Finally, results of this study may contribute towards understanding SbSULTR genes and their regulations and roles in Cd stress in sorghum.

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Authors and Affiliations

  1. Department of Agricultural Biotechnology, Akdeniz University, Antalya, Turkey

    M. Aydın Akbudak & Kubra Kontbay

  2. Department of Crop and Animal Production, Cilimli Vocational School, Duzce University, Cilimli, Duzce, Turkey

    Ertugrul Filiz

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  1. M. Aydın Akbudak
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  2. Ertugrul Filiz
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  3. Kubra Kontbay
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Correspondence to M. Aydın Akbudak or Ertugrul Filiz.

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Akbudak, M.A., Filiz, E. & Kontbay, K. Genome-wide identification and cadmium induced expression profiling of sulfate transporter (SULTR) genes in sorghum (Sorghum bicolor L.). Biometals 31, 91–105 (2018). https://doi.org/10.1007/s10534-017-0071-5

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  • DOI: https://doi.org/10.1007/s10534-017-0071-5

Keywords

  • Sulfate transporter genes
  • Heavy metal stress
  • Cadmium stress
  • Sorghum
  • Bioinformatics