Skip to main content

Advertisement

Log in

The role of microphytobenthos on shallow coastal lagoons: a modelling approach

  • Published:
Biogeochemistry Aims and scope Submit manuscript

Abstract

Ria Formosa is a Region of Restricted Exchange given its limited connection to coastal water circulation. Furthermore, it is subject to several anthropogenic activities that can lead to an increase in nutrients and potentially to eutrophication. Previous studies have shown the importance of the benthic compartment, specifically the microphytobenthos (MPB) in this shallow coastal lagoon. The dCSTT–MPB model [new version of the dynamic Comprehensive Studies Task Team (dCSTT) model] here described couples the benthic and pelagic compartments. Due to the shallowness of the system, the benthic microalgae are one of the most important primary producers of the system. Preliminary results of the model show a large biomass of benthic microalgae, which strongly influences the pelagic chlorophyll concentration by resuspension. However, algae concentrations in the water column are relatively small due to the high flushing rate of the lagoon. The MPB community is mainly supported by nutrients in the pore water. A sensitivity analysis (SA) has revealed that the factors associated with the benthic compartment were the most important and sensitive to changes. Porosity, benthic chlorophyll recycling, loss of MPB due to grazing and the yield of microphytobenthic chlorophyll from nitrogen were some of the most sensitive parameters, as well as the ones associated with decay of particulate organic nitrogen. The development of our dCSTT–MPB model has itself provided insights into benthic function.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7

Similar content being viewed by others

References

  • Asmus R, Sprung M, Asmus H (2000) Nutrient fluxes in intertidal communities of a South European lagoon (Ria Formosa)—similarities and differences with a northern Wadden Sea bay (Sylt-Rømø Bay). Hydrobiologia 436:217–235

    Article  Google Scholar 

  • Baretta JW, Ebenhöh W, Ruardij P (1995) The European Regional Seas Ecosystem Model, a complex marine ecosystem model. Neth J Sea Res 33:233–246

    Article  Google Scholar 

  • Blackford J (2002) The influence of microphytobenthos on the Northern Adriatic ecosystem: a modelling study. Estuar Coastal Shelf Sci 55:109–123

    Article  Google Scholar 

  • Bricker S, Ferreira JG, Simas T (2003) An integrated methodology for the assessment of estuarine trophic status. Ecol Model 169:39–60

    Article  Google Scholar 

  • Bricker S, Longstaff B, Dennison W, Jones A, Boicourt K, Wicks C, Woemer J (2008) Effects of nutrient enrichment in the nation’s estuaries: a decade of change. Harmful Algae 8:21–32

    Article  Google Scholar 

  • Brito A (2010) The development of an assimilative capacity model for the sustainable management of nutrient within the Ria Formosa (southern Portugal). PhD thesis, Edinburgh Napier University, 381 pp

  • Brito A, Newton A, Tett P, Fernandes T (2009a) Understanding the importance of sediments to water quality in coastal shallow lagoons. J Coast Res 56:381–384

    Google Scholar 

  • Brito A, Newton A, Tett P, Fernandes T (2009b) Seasonal, spatial and vertical variability of microphytobenthos in a shallow lagoon: Ria Formosa (Portugal). Estuar Coast Shelf Sci 83:67–76

    Article  Google Scholar 

  • Brito A, Newton A, Tett P, Fernandes T (2010a) Sediment-water interactions in a coastal shallow lagoon, Ria Formosa (Portugal): implications within the Water Framework Directive. J Environ Monit 12:318–328

    Article  Google Scholar 

  • Brito A, Newton A, Tett P, Icely J, Fernandes T (2010b) The yield of microphytobenthic chlorophyll from nutrients: enriched experiments in microcosms. J Exp Mar Biol Ecol 384:30–43

    Article  Google Scholar 

  • Caetano M, Ferreira JG, Icely J, Newton A, Nunes JP, Vale C (2002) Ria Formosa. In: Gilpin L, Tett P (eds) OAERRE sites description report. Napier University, Edinburgh

    Google Scholar 

  • Campolongo F, Cariboni J, Saltelli A (2007) An effective screening design for sensitivity analysis of large models. Environ Model Softw 22:1509–1518

    Article  Google Scholar 

  • Cartaxana P, Mendes CR, Van Leeuwe MA, Brotas V (2006) Comparative study on the microphytobenthic pigments of muddy and sandy intertidal pigments of the Tagus estuary. Estuar Coast Shelf Sci 66:225–230

    Article  Google Scholar 

  • CEC (1991) Council Directive of 21 May 1991 concerning urban wastewater treatment (91/271/EEC). Official Journal of the European Communities, L135 of 30.5.91, pp 40–52

  • Cloern J, Jassby A (2008) Complex seasonal patterns at the land-sea interface. Ecol Lett 11:1294–1303

    Article  Google Scholar 

  • Cossarini G, Solidoro C (2008) Global sensitivity analysis of a trophodynamic model of the Gulf of Trieste. Ecol Model 212:16–27

    Article  Google Scholar 

  • Crane M, Warr S, Codling I, Power B (2006) Review of Environmental Quality Standards (EQSs) for use in assimilative capacity model development. Watts & Crane Associates, Faringdon

    Google Scholar 

  • CSTT (Comprehensive Studies Task Team) (1994) Comprehensive studies for the purposes of article 6 of DIR 91/271 EEC, the Urban Waste Water Treatment Directive. Published for the Comprehensive Studies Task Team of Group Coordinating Sea Disposal Monitoring by the Forth River Purification Board, Edinburgh

  • CSTT (Comprehensive Studies Task Team) (1997) Comprehensive studies for the purposes of article 6 and 8.5 of Directive 91/271 ECC, the Urban Waste Water Treatment Directive, 2nd edn. Report prepared for the UK Urban Waste Water Treatment Directive Implementation Group and Environmental Departments by the Group Co-ordinating Sea Disposal Monitoring, UK. Department of the Environment for Northern Ireland, the Environment Agency, the Scottish Environment Protection Agency and the Water Services Association, Edinburgh, SEPA, 60 pp

  • Devlin M, Barry J, Mills D, Gowen R, Foden J, Sivyer D, Tett P (2008) Relationships between suspended particulate material, light attenuation and Sechi disk in UK marine waters. Estuar Coast Shelf Sci 79:429–439

    Article  Google Scholar 

  • Di Toro D (2001) Sediment flux modeling. Wiley, New York, 624 pp

  • Dias JM, Sousa M, Bertin X, Fortunato AB, Oliveira A (2009) Numerical modelling of the impact of the Ancão inlet relocation (Ria Formosa, Portugal). Environ Model Softw 24:711–725

    Article  Google Scholar 

  • Droop M (1968) Vitamin B12 and marine ecology, IV: the kinetics of uptake, growth and inhibition in Monochrysis lutheri. J Mar Biol Assoc UK 48:689–733

    Article  Google Scholar 

  • Droop MR (1983) 25 years of algal growth kinetics—a personal view. Bot Mar 26:99–112

    Article  Google Scholar 

  • Edwards V (2001) The yield of marine phytoplankton chlorophyll from dissolved inorganic nitrogen under eutrophic conditions. PhD thesis, Napier University, Edinburgh

  • Edwards V, Tett P, Jones K (2003) Changes in the yield of chlorophyll a from dissolved available inorganic nitrogen after an enrichment event—applications for predicting eutrophication in coastal waters. Cont Shelf Res 23:1771–1785

    Article  Google Scholar 

  • Edwards V, Icely J, Newton A, Webster R (2005) The yield of chlorophyll from nitrogen: a comparison between the shallow Ria Formosa lagoon and the deep oceanic conditions at Sagres along the southern coast of Portugal. Estuar Coast Shelf Sci 62:391–403

    Article  Google Scholar 

  • Eppley R (1972) Temperature and phytoplankton growth in the sea. Fish Bull 70:1063–1085

    Google Scholar 

  • Eppley R, Strickland D (1968) Kinetics of marine phytoplankton growth. In: Droop M, Wood E (eds) Advances in the microbiology of the sea. Academic Press, New York, pp 23–62

    Google Scholar 

  • Falcão M (1996) Dinâmica dos Nutrientes na Ria Formosa: efeitos da interação da laguna com as suas interfaces na reciclagem do azoto, fósforo e sílica. PhD thesis, University of Algarve

  • Fulton EA, Parslow JS, Smith ADM, Johnson CR (2004) Biogeochemical marine ecosystem models II: the effect of physiological detail on model performance. Ecol Model 173:371–406

    Article  Google Scholar 

  • GESAMP (IMO/FAO/UNESCO-IOC/WMO/WHO/IAEA/UN/UNEP Joint Group of Experts on the Scientific Aspects of Marine Environmental Protection) (1986) Environmental capacity: an approach to marine pollution prevention. Report of the Study GESAMP 30. FAO, Rome, Italy, 49 pp

  • Gowen R, Tett P, Jones K (1992) Predicting marine eutrophication: the yield of chlorophyll from nitrogen in Scottish coastal phytoplankton. Mar Ecol Prog Ser 85:153–161

    Article  Google Scholar 

  • Guarini JM, Sari N, Moritz C (2008) Modelling the dynamics of the microalgal biomass in semi-enclosed shallow-water ecosystems. Ecol Model 211:267–278

    Article  Google Scholar 

  • Howarth R, Marino R (2006) Nitrogen as the limiting nutrient for eutrophication in coastal marine ecosystem: evolving views over three decades. Limnol Oceanogr 51:364–376

    Article  Google Scholar 

  • Jackson P, Briggs K, Flint R, Holyer R, Sandidge J (2002) Two- and three-dimensional heterogeneity in carbonate sediments using resistivity imaging. Mar Geol 182:55–76

    Article  Google Scholar 

  • Jesus B, Brotas V, Marani M, Paterson D (2005) Spatial dynamics of microphytobenthos determined by PAM fluorescence. Estuar Coast Shelf Sci 65:30–42

    Article  Google Scholar 

  • Kirk J (1994) Light and photosynthesis in aquatic ecosystems, 2nd edn. Cambridge University Press, Cambridge, 528 pp

  • Kohberger R, Scavia D, Wilkinson J (1978) A method for parameter sensitivity analysis in differential equation models. Water Resour Res 14:25–29

    Article  Google Scholar 

  • Laurent C, Tett P, Fernandes TF, Gilpin L, Jones K (2006) A simple assimilative capacity model for fjordic environments. J Mar Syst 61:149–164

    Article  Google Scholar 

  • Lee J-Y, Tett P, Kim K-R (2003) Parameterising a microplankton model. J Korean Soc Oceanogr 38:185–210

    Google Scholar 

  • Mann K, Lazier J (1996) Dynamics of marine ecosystems: biological-physical interaction in the ocean, 2nd edn. Blackwell Science, Oxford, 480 pp

  • Morris M (1991) Factorial sampling plans for preliminary computational experiments. Technometrics 33:161–174

    Article  Google Scholar 

  • Mudge S, Icely J, Newton A (2008) Residence times in a hypersaline lagoon: using salinity as a tracer. Estuar Coast Shelf Sci 77:278–284

    Article  Google Scholar 

  • Murray A, Parslow J (1997) Port Philip Bay integrated model: final report. CSIRO Environmental Projects Office, Australia, 215 pp

  • Murray L, Mudge S, Newton A, Icely J (2006) The effect of benthic sediments on dissolved nutrient concentrations and fluxes. Biogeochemistry 81:159–178

    Article  Google Scholar 

  • Newton A, Icely JD (2006) Oceanographic applications to eutrophication in tidal, coastal lagoons, the Ria Formosa, Portugal. J Coast Res 39:1346–1350

    Google Scholar 

  • Newton A, Mudge S (2003) Temperature and salinity regimes in a shallow, mesotidal lagoon, the Ria Formosa, Portugal. Estuar Coast Shelf Sci 57:73–85

    Article  Google Scholar 

  • Newton A, Mudge S (2005) Lagoon-sea exchanges, nutrient dynamics and water quality management of Ria Formosa (Portugal). Estuar Coast Shelf Sci 62:405–414

    Article  Google Scholar 

  • Newton A, Icely JD, Falcão M, Nobre A, Nunes JP, Ferreira JG, Vale C (2003) Evaluation of the eutrophication in the Ria Formosa coastal lagoon, Portugal. Cont Shelf Res 23:1945–1961

    Article  Google Scholar 

  • Nobre AM, Ferreira JG, Newton A, Simas T, Icely JD, Neves R (2005) Management of coastal eutrophication: integration of field data, ecosystem-scale simulations and screening models. J Mar Syst 56:375–390

    Article  Google Scholar 

  • NRC (National Research Council) (2000) Clean coastal waters: understanding and reducing the effects of nutrient pollution. National Academy Press, Washington, DC

    Google Scholar 

  • Portilla E, Tett P, Gillibrand P, Inall M (2009) Description and sensitivity analysis for the LESV model: water quality variables and the balance of organisms in a fjordic region of restricted exchange. Ecol Model (in press)

  • Saltelli A, Chan K, Scott E (2008) Sensitivity analysis, 1st edn. Wiley, New York, 475 pp

  • Serôdio J, Silva J, Catarino F (1997) Non destructive tracing of migratory rhythms of intertidal benthic microalgae using in vivo chlorophyll a fluorescence. J Phycol 33:542–553

    Article  Google Scholar 

  • Serôdio J, Vieira S, Cruz S, Barroso F (2005) Short-term variability in the photosynthetic activity of micropytobenthos as detected by measuring rapid light curves using variable fluorescence. J Mar Biol 146:903–914

    Article  Google Scholar 

  • Serpa D, Falcão M, Duarte P, Fonseca LC, Vale C (2007) Evaluation of ammonium and phosphate release from intertidal and subtidal sediments of a shallow coastal lagoon (Ria Formosa, Portugal): a modelling approach. Biogeochemistry 82:291–304

    Article  Google Scholar 

  • Sobral P (1995) Ecophysiology of Ruditapes decussatus. PhD thesis, New University of Lisbon, 187 pp

  • Tett P (1990) The photic zone. In: Herring PJ, Campbell AK, Whitfield M, Maddock L (eds) Light and life in the sea. Cambridge University Press, Cambridge, pp 59–87

    Google Scholar 

  • Tett P, Joint I, Purdie D, Baars M, Oosterhuis S, Daneri G, Hannah F, Mills DK, Plummer D, Pomroy A, Walne AW, Witte HJ (1993) Biological consequences of tidal stirring gradients in the North Sea. Philos Trans R Soc B A340:493–508

    Google Scholar 

  • Tett P, Gilpin L, Svendsen H, Erlandsson CP, Larsson U, Kratzer S, Fouilland E, Janzen C, Lee J, Grenz C, Newton A, Ferreira JG, Fernades T, Scory S (2003) Eutrophication and some European waters of restricted exchange. Cont Shelf Res 23:1635–1671

    Article  Google Scholar 

  • Tett P, Portilla E, Inall M, Gillibrand P, Gubbins M, Amundrod T (2007) Modelling the assimilative capacity of sea lochs (final report on SARF 012). Napier University, pp 1–29

  • Underwood G, Paterson D (2003) The importance of extracellular carbohydrate production by marine epipelic diatoms. Adv Bot Res 40:183–240

    Article  Google Scholar 

Download references

Acknowledgments

Ana Brito was funded by a Portuguese Ph.D. grant from FCT (POCI 2010 BD/21525/05) and initial studentship (from October to December 2005) from Edinburgh Napier University. This work was also funded by European Framework 6 specific targeted research project ECASA (006540—contract number).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ana C. Brito.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Brito, A.C., Newton, A., Fernandes, T.F. et al. The role of microphytobenthos on shallow coastal lagoons: a modelling approach. Biogeochemistry 106, 207–228 (2011). https://doi.org/10.1007/s10533-010-9539-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10533-010-9539-x

Keywords

Navigation