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Persistence and degrading activity of free and immobilised allochthonous bacteria during bioremediation of hydrocarbon-contaminated soils

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Abstract

Rhodococcus sp. and Pseudomonas sp. bioremediation experiments were carried out using free and immobilized cells on natural carrier material (corncob powder) in order to evaluate the feasibility of its use in the bioremediation of hydrocarbon-contaminated soils. Terminal restriction fragment length polymorphism analysis was performed on the 16S rRNA gene as molecular fingerprinting method in order to assess the persistence of inoculated strains in the soil over time. Immobilized Pseudomonas cells degraded hydrocarbons more efficiently in the short term compared to the free ones. Immobilization seemed also to increase cell growth and stability in the soil. Free and immobilized Rhodococcus cells showed comparable degradation percentages, probably due to the peculiarity of Rhodococcus cells to aggregate into irregular clusters in the presence of hydrocarbons as sole carbon source. It is likely that the cells were not properly adsorbed on the porous matrix as a result of the small size of its pores. When Rhodococcus and Pseudomonas cells were co-immobilized on the matrix, a competition established between the two strains, that probably ended in the exclusion of Pseudomonas cells from the pores. The organic matrix might act as protective agent, but it also possibly limited cell density. Nevertheless, when the cells were properly adsorbed on the porous matrix, the immobilization became a suitable bioremediation strategy.

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References

  • Blackwood CB, Marsh T, Kim SH, Paul EA (2003) Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities. Appl Environ Microbiol 69:926–932

    Google Scholar 

  • Boopathy R (2000) Factors limiting bioremediation technologies. Bioresource Technol 74:63–67

    Google Scholar 

  • de Carvalho CCCR, Wick LY, Heipieper HJ (2009) Cell wall adaptations of planktonic and biofilm Rhodococcus erythropolis cells to growth on C5 to C16 n-alkane hydrocarbons. Appl Microbiol Biotechnol 82:311–320

    Google Scholar 

  • Cassidy MB, Lee H, Trevors JT (1996) Environmental applications of immobilized microbial cells: A review. J Ind Microbiol Biot 16(2):79–101

    Google Scholar 

  • El Fantorussi S, Aghatos SN (2005). Is bioaugmentation a feasible strategy for pollutant removal and site remediation? Curr Opin in Microbiol 8:268–275

    Google Scholar 

  • Franzetti A, Caredda P, Ruggeri C, La Colla P, Tamburini E, Papacchini M, Bestetti G (2009) Potential applications of surface active compounds by Gordonia sp. strain BS29 in soil remediation technologies. Chemosphere 75:810–807

    Google Scholar 

  • Gandolfi I, Sicolo M, Franzetti A, Fontanarosa E, Santagostino A, Bestetti G (2010) Influence of compost amendment on microbial community and ecotoxicity of hydrocarbon-contaminated soils. Bioresour Technol 101:568–575

    Article  PubMed  CAS  Google Scholar 

  • Jimoh A (2004) Effect of immobilized materials on Saccharomyces cerevisiae. AU J Technol 8:62–68

    Google Scholar 

  • Junier P, Junier T, Witzel K-P (2008) TRiFLe, a program for in silico terminal restriction fragment length polymorphism analysis with user-defined sequence sets. Appl Environ Microbiol 74:6452–6456

    Article  PubMed  CAS  Google Scholar 

  • Labana S, Pandey G, Paul D, Sharma NK, Basu A, Jain RK (2005) Pot and field studies on bioremediation of p-nitrophenol contaminated soil using Arthrobacter protophormiae RKJ100. Environ Sci Technol 39:3330–3337

    Article  PubMed  CAS  Google Scholar 

  • Liu WT, Marsh TL, Cheng H, Forney LJ (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63:4516–4522

    PubMed  CAS  Google Scholar 

  • McLoughlin AJ (1994) Controlled release of immobilized cells as a strategy to regulate ecological competence of inocula. In: Scheper T (ed) Biotechnics/wastewater. Springer, Berlin, pp 1–45

    Chapter  Google Scholar 

  • Ministero per le Politiche Agricole (1999) Decreto Ministeriale del 13/09/1999––“Metodi ufficiali di analisi chimica del suolo”

  • Mishra S, Jyot J, Kuhad RC, Lal B (2001) In situ bioremediation potential of an oily sludge-degrading bacterial consortium. Curr Microbiol 43:328–335

    Article  PubMed  CAS  Google Scholar 

  • Moslemy P, Neufeld RJ, Guiot SR (2002) Biodegradation of gasoline by gellan gum-encapsulated bacterial cells. Biotechnol Bioeng 80:175–184

    Article  PubMed  CAS  Google Scholar 

  • Mrozik A, Piotrowska-Seget Z (2010) Bioaugmentation as a strategy for cleaning up of soils contaminated with aromatic compounds. Microbiol Res 165:363–375

    Article  PubMed  CAS  Google Scholar 

  • Philp JC, Atlas RM (2005) Bioremediation of contaminated soils and aquifers. In: Atlas RM, Philp J (eds) Bioremediation, ASM Press, Washington,DC

  • Plangklang P, Reungsang A (2009) Bioaugmentation of carbofuran residues in soil using Burkholderia cepacia PCL3 adsorbed on agricultural residues. Int Biodeter Biodegr 63:515–522

    Article  CAS  Google Scholar 

  • Ranjard L, Poly F, Nazaret S (2000) Monitoring complex bacterial communities using culture-independent molecular techniques: application to soil environment. Res Microbiol 151:167–177

    Article  PubMed  CAS  Google Scholar 

  • Smalla K, Wachtendorf U, Heuer H, Liu W-T, Forney L (1998) Analysis of BIOLOG GN substrate utilization patterns by microbial communities. Appl Environ Microbiol 64:1220–1225

    PubMed  CAS  Google Scholar 

  • Straube WL, Jones-Meehan J, Pritchard PH, Jones WR (1999) Bench-scale optimization of bioaugmentation strategies for treatment of soils contaminated with high molecular weight polyaromatic hydrocarbons. Res Conserv Recycl 27:27–37

    Article  Google Scholar 

  • Suzuki MT, Giovannoni SJ (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62:625–630

    PubMed  CAS  Google Scholar 

  • Suzuki MT, Rappe MS, Giovannoni SJ (1998) Kinetic bias estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl Environ Microbiol 64:4522–4529

    PubMed  CAS  Google Scholar 

  • Tyagi M, da Fonsec MMR, de Carvalho CCCR (2011) Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes. Biodegradation 22:231–241

    Article  PubMed  CAS  Google Scholar 

  • Van Veen JA, van Overbeek LS, Elsas JD (1997) Fate and activity of microorganisms introduced into soil. Microbiol Mol Biol Rev 61:121

    PubMed  Google Scholar 

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Acknowledgments

Funding for this research was provided by Gio Eco Srl. (Segrate, Milan, Italy).

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Correspondence to Andrea Franzetti.

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Rivelli, V., Franzetti, A., Gandolfi, I. et al. Persistence and degrading activity of free and immobilised allochthonous bacteria during bioremediation of hydrocarbon-contaminated soils. Biodegradation 24, 1–11 (2013). https://doi.org/10.1007/s10532-012-9553-x

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