Abstract
Objectives
To characterize a novel membrane-bound d -amino acid dehydrogenase from Proteus mirabilis JN458 (PmDAD).
Results
The recombinant PmDAD protein, encoding a peptide of 434 amino acids with a MW of 47.7 kDa, exhibited broad substrate specificity with d -alanine the most preferred substrate. The K m and V max values for d -alanine were 9 mM and 20 μmol min−1 mg−1, respectively. Optimal activity was at pH 8 and 45 °C. Additionally, this PmDAD generated H2O2 and exhibited 68 and 60% similarity with E. coli K12 DAD and Pseudomonas aeruginosa DAD, respectively, with low degrees of sequence similarity with other bacterial DADs.
Conclusions
d-Amino acid dehydrogenase from Proteus mirabilis JN458 was expressed and characterized for the first time, DAD was confirmed to be an alanine dehydrogenase.
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References
Armbruster CE, Mobley HL (2012) Merging mythology and morphology: the multifaceted lifestyle of Proteus mirabilis. Nat Rev Microbiol 10:743–754
Baek JO, Seo JW, Kwon O, Seong SI, Kim IH, Kim CH (2008) Heterologous expression and characterization of L-amino acid deaminases from Proteus mirabilis in Escherichia coli. J Biotechnol 136(Supplement):S300
Baek JO, Seo JW, Kwon O, Seong SI, Kim IH, Kim CH (2011) Expression and characterization of a second L-amino acid deaminase isolated from Proteus mirabilis in Escherichia coli. J Basic Microb 51:129–135
Dixon M, Kleppe K (1965) D-amino acid oxidase II. Specificity, competitive inhibition and reaction sequence. Biochim Biophys Acta 96:368–382
Drzewiecka D (2016) Significance and roles of Proteus spp. bacteria in natural environments. Microb Ecol 72:741–759
Franklin FCH, Venables WA (1976) Biochemical, genetic, and regulatory studies of alanine catabolism in Escherichia coil K12. Mol Gen Genet 149:229–237
He WQ, Li CR, Lu CD (2011) Regulation and characterization of the dadRAX locus for D-amino acid catabolism in Pseudomonas aeruginosa PAO1. J Bacteriol 193:2107–2115
Li XB, Lu NX, Brady HR, Packman AI (2016) Biomineralization strongly modulates the formation of Proteus mirabilis and Pseudomonas aeruginosa dual-species biofilms. FEMS Microbiol Ecol 92
Lobocka M, Hennig J, Wild J, Klopotowski T (1994) Organization and expression of the Escherichia coli K-12 dad operon encoding the smaller subunit of D-amino-acid dehydrogenase and the catabolic alanine racemase. J Bacteriol 176:1500–1510
Olsiewski PJ, Kaczorowski GJ, Walsh C (1980) Purification and properties of D-amino acid dehydrogenase, an inducible membrane-bound iron-sulfur flavoenzyme from Escherichia coli B. J Biol Chem 255:4487–4494
Pollegioni L, Piubelli L, Sacchi S, Pilone MS, Molla G (2007) Physiological functions of D-amino acid oxidases: from yeast to humans. Cell Mol Life Sci 64:1373–1394
Saito M, Nishimura K, Hasegawa Y, Shinohara T, Wakabayashi S, Kurihara T, Ishizuka M, Nagata Y (2007) Alanine racemase from Helicobacter pylori NCTC 11637: Purification, characterization and gene cloning. Life Sci 80:788–794
Satomura T, Kawakami R, Sakuruba H, Ohshima T (2002) Dye-linked d-proline dehydrogenase from hyperthermophilic archaeon Pyrobaculum islandicum is a novel FAD-dependent amino acid dehydrogenase. J Biol Chem 277:12861–12867
Satomura T, Sakuraba H, Suye S, Ohshima T (2015) Dye-linked D-amino acid dehydrogenases: biochemical characteristics and applications in biotechnology. Appl Microbiol Biotechnol 99:9337–9347
Tanigawa M, Shinohara T, Saito M, Nishimura K, Hasegawa Y, Wakabayashi S, Ishizuka M, Nagata Y (2009) D-amino acid dehydrogenase from Helicobacter pylori NCTC 11637. Amino Acids 38:247–255
Tsukada K (1966) D-amino acid dehydrogenases of Pseudomonas fluorescence. J Biol Chem 241:4522–4528
Wild J, Walczak W, Krajewska Grynkiewicz K, Klopotowski T (1974) D-amino acid dehydrogenase: the enzyme of the first step of d-histidine and d-methionine racemization in Salmonella typhimurium. Mol Gen Genet 128:131–146
Yu ZL, Wang J, Zhou N, Zhao CT, Qiu JP (2013) A highly sensitive method for quantitative determination of L-amino acid oxidase activity based on the visualization of ferric-xylenol orange formation. PloS One 8(12):e82483
Acknowledgments
We are grateful for the financial support of this work by the National Key Scientific Instrument and Equipment Development Project of China (2013YQ17052504), the Program for Changjiang Scholars and Innovative Research Team in the University of the Ministry of Education of China (IRT_15R55), and the seventh group of the Hundred-Talent Program of Shanxi Province (2015).
Supporting information
Supplementary Table 1—Purification of P. mirabilis DAD from recombinant Escherichia coli cells.
Supplementary Fig. 1—SDS-PAGE (12%) analysis of recombinant P. mirabilis DAD from E. coli cells.
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Xu, J., Bai, Y., Fan, T. et al. Expression, purification, and characterization of a membrane-bound d-amino acid dehydrogenase from Proteus mirabilis JN458. Biotechnol Lett 39, 1559–1566 (2017). https://doi.org/10.1007/s10529-017-2388-0
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DOI: https://doi.org/10.1007/s10529-017-2388-0