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A completely in vitro system for obtaining scFv using mRNA display, PCR, direct sequencing, and wheat embryo cell-free translation

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Abstract

Using mRNA display followed by in vitro sequencing and translation, a complete in vitro system for obtaining scFv has been developed. An mRNA display library for synthetic scFv was panned against human TNF receptor (TNFR). The nucleotide portion of the enriched molecules was subjected to limiting dilution, and PCR-amplified. Three of the proteins encoded by the amplified fragments were synthesized in a wheat embryo (WE) cell-free system using a batch method. They were shown to bind TNFR by ELISA. One of their sequences was identified in vitro. The identified clone was further synthesized at approx. 0.5 mg/ml reaction mixture in a WE system with dialysis as a totally soluble protein.

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References

  • Akamatsu Y, Pakabunto K, Xu Z, Zhang Y, Tsurushita N (2007) Whole IgG surface display on mammalian cells: application to isolation of neutralizing chicken monoclonal anti-IL-12 antibodies. J Immunol Methods 327(1–2):40–52

    Article  PubMed  CAS  Google Scholar 

  • Bardoczy V, Geczi V, Sawasaki T, Endo Y, Meszaros T (2008) A set of ligation-independent in vitro translation vectors for eukaryotic protein production. BMC Biotechnol 8:32

    Article  PubMed  Google Scholar 

  • Benson DA, Boguski MS, Lipman DJ, Ostell J (1997) GenBank. Nucleic Acids Res 25(1):1–6

    Article  PubMed  CAS  Google Scholar 

  • Cabilly S (1989) Growth at sub-optimal temperatures allows the production of functional, antigen-binding Fab fragments in Escherichia coli. Gene 85(2):553–557

    Article  PubMed  CAS  Google Scholar 

  • Fukuda I, Kojoh K, Tabata N, Doi N, Takashima H, Miyamoto-Sato E, Yanagawa H (2006) In vitro evolution of single-chain antibodies using mRNA display. Nucleic Acids Res 34(19):e127

    Article  PubMed  Google Scholar 

  • Hanes J, Pluckthun A (1997) In vitro selection and evolution of functional proteins by using ribosome display. Proc Natl Acad Sci USA 94(10):4937–4942

    Article  PubMed  CAS  Google Scholar 

  • Kabat EA, Wu TT (1991) Identical V region amino acid sequences and segments of sequences in antibodies of different specificities. Relative contributions of VH and VL genes, minigenes, and complementarity-determining regions to binding of antibody-combining sites. J Immunol 147(5):1709–1719

    PubMed  CAS  Google Scholar 

  • Kawasaki T, Gouda MD, Sawasaki T, Takai K, Endo Y (2003) Efficient synthesis of a disulfide-containing protein through a batch cell-free system from wheat germ. Eur J Biochem 270(23):4780–4786

    Article  PubMed  CAS  Google Scholar 

  • Koga Y, Kobayashi K, Yang J, Nakano H, Yamane T (2002) In vitro construction and screening of a Burkholderia cepacia lipase library using single-molecule PCR and cell-free protein synthesis. J Biosci Bioeng 94(1):84–86

    Article  PubMed  CAS  Google Scholar 

  • Koga Y, Yamane T, Nakano H (2007) Creation of novel enantioselective lipases by SIMPLEX. Methods Mol Biol 375:165–181

    Article  PubMed  CAS  Google Scholar 

  • Lee SH, Choi JI, Park SJ, Lee SY, Park BC (2004) Display of bacterial lipase on the Escherichia coli cell surface by using FadL as an anchoring motif and use of the enzyme in enantioselective biocatalysis. Appl Environ Microbiol 70(9):5074–5080

    Article  PubMed  CAS  Google Scholar 

  • Lipovsek D, Pluckthun A (2004) In-vitro protein evolution by ribosome display and mRNA display. J Immunol Methods 290(1–2):51–67

    Article  PubMed  CAS  Google Scholar 

  • Madin K, Sawasaki T, Ogasawara T, Endo Y (2000) A highly efficient and robust cell-free protein synthesis system prepared from wheat embryos: plants apparently contain a suicide system directed at ribosomes. Proc Natl Acad Sci USA 97(2):559–564

    Article  PubMed  CAS  Google Scholar 

  • Miyamoto-Sato E, Nemoto N, Kobayashi K, Yanagawa H (2000) Specific bonding of puromycin to full-length protein at the C-terminus. Nucleic Acids Res 28(5):1176–1182

    Article  PubMed  CAS  Google Scholar 

  • Nemoto N, Miyamoto-Sato E, Husimi Y, Yanagawa H (1997) In vitro virus: bonding of mRNA bearing puromycin at the 3′-terminal end to the C-terminal end of its encoded protein on the ribosome in vitro. FEBS Lett 414(2):405–408

    Article  PubMed  CAS  Google Scholar 

  • Parker MH, Chen Y, Danehy F, Dufu K, Ekstrom J, Getmanova E, Gokemeijer J, Xu L, Lipovsek D (2005) Antibody mimics based on human fibronectin type three domain engineered for thermostability and high-affinity binding to vascular endothelial growth factor receptor two. Protein Eng Des Sel 18(9):435–444

    Article  PubMed  CAS  Google Scholar 

  • Rungpragayphan S, Kawarasaki Y, Imaeda T, Kohda K, Nakano H, Yamane T (2002) High-throughput, cloning-independent protein library construction by combining single-molecule DNA amplification with in vitro expression. J Mol Biol 318(2):395–405

    Article  PubMed  CAS  Google Scholar 

  • Rungpragayphan S, Nakano H, Yamane T (2003) PCR-linked in vitro expression: a novel system for high-throughput construction and screening of protein libraries. FEBS Lett 540(1–3):147–150

    Article  PubMed  CAS  Google Scholar 

  • Sawasaki T, Hasegawa Y, Tsuchimochi M, Kamura N, Ogasawara T, Kuroita T, Endo Y (2002) A bilayer cell-free protein synthesis system for high-throughput screening of gene products. FEBS Lett 514(1):102–105

    Article  PubMed  CAS  Google Scholar 

  • Shibui T, Nagahari K (1992) Secretion of a functional Fab fragment in Escherichia coli and the influence of culture conditions. Appl Microbiol Biotechnol 37(3):352–357

    Article  PubMed  CAS  Google Scholar 

  • Shiratori M, Kobayashi T, Shibui T (2008) Identification of amino acids essential for antibody binding by mRNA-display using a random peptide library: an anti-human tumor protein p53 antibody as a model. Mol Biotechnol

  • Sidhu SS, Li B, Chen Y, Fellouse FA, Eigenbrot C, Fuh G (2004) Phage-displayed antibody libraries of synthetic heavy chain complementarity determining regions. J Mol Biol 338(2):299–310

    Article  PubMed  CAS  Google Scholar 

  • Siegel RW (2009) Antibody affinity optimization using yeast cell surface display. Methods Mol Biol 504:351–383

    Article  PubMed  CAS  Google Scholar 

  • Tomlinson IM, Walter G, Marks JD, Llewelyn MB, Winter G (1992) The repertoire of human germline VH sequences reveals about fifty groups of VH segments with different hypervariable loops. J Mol Biol 227(3):776–798

    Article  PubMed  CAS  Google Scholar 

  • Tsuboi T, Takeo S, Iriko H, Jin L, Tsuchimochi M, Matsuda S, Han ET, Otsuki H, Kaneko O, Sattabongkot J, Udomsangpetch R, Sawasaki T, Torii M, Endo Y (2008) Wheat germ cell-free system-based production of malaria proteins for discovery of novel vaccine candidates. Infect Immun 76(4):1702–1708

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Tatsuro Shibui.

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Shibui, T., Kobayashi, T. & Kanatani, K. A completely in vitro system for obtaining scFv using mRNA display, PCR, direct sequencing, and wheat embryo cell-free translation. Biotechnol Lett 31, 1103–1110 (2009). https://doi.org/10.1007/s10529-009-9972-x

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  • DOI: https://doi.org/10.1007/s10529-009-9972-x

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