Abstract
Genetic diversity and population differentiation of the blue swimming crab (Portunus pelagicus) in Thailand, originating from Ranong and Krabi located in the Andaman Sea (west) and Chanthaburi, Prachuap Khiri Khan, and Suratthani located in the Gulf of Thailand (east), were examined by AFLP analysis. High genetic diversity of P. pelagicus in Thai waters was found (N = 72). The four primer combinations generated 227 AFLP fragments, and the percentage of polymorphic bands in each geographic sample was 66.19–94.38%. The mean genetic distance between pairs of samples was 0.1151–0.2440. Geographic heterogeneity analyses using the exact test and F ST-based statistics between all pairwise comparisons were statistically significant (P < 0.01), indicating a fine-scale level of intraspecific population differentiation of Thai P. pelagicus. The estimated number of migrants per generation (N e m) was 0.26–0.76, suggesting restricted gene flow levels of P. pelagicus in Thai waters.
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References
Avise JC (1994) Molecular markers, natural history and evolution. Chapman and Hall, New York
Bryars SR, Adams M (1999) An allozyme study of the blue swimming crab, Portunus pelagicus (Crustacean: Portunidae), in Australia: stock delineation in southern Australia and evidence for a cryptic species in northern waters. Mar Freshw Res 50:15–26
Carvalho GR, Hauser L (1994) Molecular genetics and the stock concept in fisheries. Rev Fish Biol Fish 4:326–350
Conover DO, Clarke LM, Munch SB, Wagner GN (2006) Spatial and temporal scales of adaptive divergence in marine fishes and its implications for conservations. J Fish Biol 69(supplement C):21–47
Edgar GJ (1990) Predator-prey interactions in seagrass beds. II. Distribution and diet of the blue manna crab Portunus pelagicus Linnaeus at Cliff Head, Western Australia. J Exp Mar Biol Ecol 139:23–32
Féral J-P (2002) How useful are the genetic markers in attempts to understand and manage marine biodiversity. J Exp Mar Biol Ecol 268:121–145
Grove-Jones R (1987) Catch and effort in the South Australian blue crab (Portunus pelagicus) fishery. South Australian Department of Fisheries Report, 45 pp
Han K, Ely B (2002) Use of AFLP analysis to assess genetic variation in Morone and Thunnus species. Mar Biotechnol 4:141–145
Hualkasin W, Sirimontaporn P, Chotigeat W, Querci J, Pongdara A (2003) Molecular phylogenetic analysis of white prawn species and the existence of two clades in Penaeus merguiensis. J Exp Mar Biol Ecol 296:1–11
Kailola PJ, Williams MJ, Stewart PC, Reichelt RE, McNee A, Grieve C (1993) Australian Fisheries Resources. Bureau of Resource Sciences, Department of Primary Industries and Energy, and the Fisheries Research and Development Corporation, Canberra, Australia, 422 pp
Kangas MI (2000) Synopsis of the biology and exploitation of the blue swimmer crab, Portunus pelagicus Linnaeus, in Western Australia. Fish Res Rep Fish West Aus 121:1–22
Klinbunga S, Sodsuk S, Penman DJ, McAndrew BJ (1996) An improved protocol for total DNA isolation and visualisation of mtDNA-RFLP(s) in tiger prawn, Penaeus monodon. Thai J Aquat Sci 3:36–41
Klinbunga S, Siludjai D, Wuthijinda W, Tassanakajon A, Jarayabhand A, Menasveta P (2001) Genetic heterogeneity of the giant tiger shrimp (Penaeus monodon) in Thailand revealed by RAPD and mtDNA-RFLP analyses. Mar Biotechnol 3:428–438
Klinbunga S, Pripue P, Khamnamtong N, Tassanakajon A, Jarayabhan P, Hirono I, Aoki T, Menaseveta P (2003) Genetic diversity and molecular markers of the tropical abalone (Haliotis asinina) in Thailand. Mar Biotechnol 5:505–517
Liu Y-G, Chen S-L, Li B-F, Wang Z-J, Liu Z (2005) Analysis of genetic variation in selected stocks of hatchery flounder, Paralichthys olivaceus, using AFLP markers. Biochem Syst Ecol 33:993–1005
Lui ZJ, Cordes JF (2004) DNA markers technologies and their applications in aquaculture genetics. Aquaculture 238:1–37
Meagher TD (1971) Ecology of the crab Portunus pelagicus (Crustacean: Portunidae) in south western Australia. Ph.D. thesis, University of Western Australia, 232 pp
Miller MP (1997) Tools for population genetic analyses TFPGA 1.3: a window program for the analysis of allozyme and molecular population genetic data. Department of Biological Sciences, Northern Arizona University
Ministry of Commerce Thailand (2005) Total production volume and value 2001–2005 (available at http://www.ops2.moc.go.th/tradeth/cgi/ExComm2.asp)
Naiyanetr P (1998) Checklist of the Crustacean Fauna in Thailand (Decapoda and Stomatopoda). Office of environmental policy and planning biodiversity series 5, 161 pp
Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583–590
Ovenden JR, Brasher DJ, White RWG (1992) Mitochondrial DNA analyses of the red rock lobster Jasus edwardsii supports an apparent absence of population subdivision throughout Australasia. Mar Biol 112:319–326
Palumbi SR, Wilson AC (1990) Mitochondrial DNA diversity in the sea urchins Strongylogentrotus purpulatus and S. droebachiensis. Evolution 44:403–415
Potter IC, Chrystal PJ, Loneragan NR (1983) The biology of the blue manna crab Portunus pelagicus in an Australian estuary. Mar Biol 78:75–85
Potter IC, Sumpton WD, Smith GS (1991) Movement, fishing sector impact, and factors affecting the recapture rate of tagged sand crabs, Portunus pelagicus (L.) in Moreton Bay, Queensland. Aust J Mar Freshw Res 42:751–760
Rice WR (1989) Analyzing tables of statistical tests. Evolution 41:223–225
Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York
Sezmis E (2004) The population genetic structure of Portunus pelagicus in Australian waters. Ph.D. thesis, Murdoch University, Australia
Supungul P, Sootanan P, Klinbunga S, Kamonrat W, Jarayabhand P, Tassanakajon A (2000) Microsatellite polymorphism and the population structure of the black tiger shrimp (Penaeus monodon) in Thailand. Mar Biotechnol 2:339–347
Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeay M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407–4414
Wang ZY, Tsoi KH, Chu KH (2004) Applications of AFLP technology in genetic and phylogemetic analysis of penaeid shrimp. Biochem Syst Ecol 32:399–407
Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370
Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213–7218
Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531–6535
Yap ES, Sezmis E, Chapin JA, Potter IC, Spencer PBS (2002) Isolation and characterization of microsatellite loci in Portunus pelagicus (Crustacea: Portunidae). Mol Ecol Notes 2:30–32
Yue GH, Li Y, Lim LC, Orban L (2004) Monitoring the genetic diversity of three Asian arowana (Scleropages formosus) captive stocks using AFLP and microsatellites. Aquaculture 237:89–102
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This research is supported by the National Center for Genetic Engineering and Biotechnology (BIOTEC), Thailand, awarded to SK and BK.
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Klinbunga, S., Khetpu, K., Khamnamtong, B. et al. Genetic Heterogeneity of the Blue Swimming Crab (Portunus pelagicus) in Thailand Determined by AFLP Analysis. Biochem Genet 45, 725–736 (2007). https://doi.org/10.1007/s10528-007-9110-1
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DOI: https://doi.org/10.1007/s10528-007-9110-1