Skip to main content

Advertisement

Log in

Oligonucleotide Microchip for the Identification of Infectious Agents of Reproductive System with Simultaneous Analysis of Determinants of Resistance to Antimicrobial Substances

  • IMMUNOLOGY AND MICROBIOLOGY
  • Published:
Bulletin of Experimental Biology and Medicine Aims and scope

We developed a multiplexed DNA microarray-based assay allowing identification of 12 causative agents of reproductive tract infections with the simultaneous detection of 47 genetic determinants of resistance to antimicrobial substances. The microarray was tested on 93 isolates of Neisseria gonorrhoeae, 32 isolates of Treponema pallidum and 29 samples of Ureaplasma spp./Mycoplasma spp. The N. gonorrhoeae isolates had multiple mutations in the penA, ponA, rpsJ, gyrA, parC, and mtrR genes; their prognostic value significantly increased when combinations of mutations were detected. In the analyzed T. pallidum isolates, single A2058G substitution in the 23S rRNA gene responsible for macrolide resistance was found. DNA sequences of Ureaplasma spp./Mycoplasma spp. were determined as wild type, which was not fully consistent with the results of analysis of their antimicrobial susceptibility

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Deriabin DG, Minakov AA, Borisov SD. Spectrum of microflora isolated from various areas of the female reproductive tract. Zh. Mikrobiol. Epidemiol. Immunol. 2001;(4):84-86. Russian.

  2. Kubanova AA, Kubanov AA, Frigo NV, Volkov IA, Rotanov SV, Suvorova AA. First experience of molecular typing and determining the antibiotic resistance of syphilis pathogen Treponema pallidum in the Russian Federation. Vestn. Dermatol. Venerol. 2013;(3):34-46. Russian.

  3. Sekhin SV, Voznesenskiy DL, Vasilev MM, Kubanova AA. Guidelines on Antimicrobial Susceptibility Testing of Neisseria gonorrhoeae. Klin. Mikrobiol. Antimikrob. Khimioter. 2003;5(2):175-182. Russian.

    Google Scholar 

  4. Cao B, Wang S, Tian Z, Hu P, Feng L, Wang L. DNA microarray characterization of pathogens associated with sexually transmitted diseases. PLoS One. 2015;10(7):e0133927 doi: https://doi.org/10.1371/journal.pone.0133927.

    Article  PubMed  PubMed Central  Google Scholar 

  5. Fettweis JM, Serrano MG, Girerd PH, Jefferson KK, Buck GA. A new era of the vaginal microbiome: advances using next-generation sequencing. Chem. Biodivers. 2012;9(5):965-976. doi: https://doi.org/10.1002/cbdv.201100359.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Hanson C, Delvaux T. Sexually transmitted infections and reproductive tract infections. Gynecology for Less-Resourced Locations. London, 2012. P. 183-199.

  7. Ilina EN, Vereshchagin VA, Borovskaya AD, Malakhova MV, Sidorenko SV, Al-Khafaji NC, Kubanova AA, Govorun VM. Relation between genetic markers of drug resistance and susceptibility profile of clinical Neisseria gonorrhoeae strains. Antimicrob. Agents Chemother. 208;52(6):2175-2182.

  8. Kriesel JD, Bhatia AS, Barrus C, Vaughn M, Gardner J, Crisp RJ. Multiplex PCR testing for nine different sexually transmitted infections. Int. J. STD. AIDS. 2016;27(14):1275-1282.

    Article  CAS  PubMed  Google Scholar 

  9. Kubanov A, Vorobyev D, Chestkov A, Leinsoo A, Shaskolskiy B, Dementieva E, Solomka V, Plakhova X, Gryadunov D, Deryabin D. Molecular epidemiology of drug-resistant Neisseria gonorrhoeae in Russia (Current Status, 2015). BMC Infect. Dis. 2016;16:389. doi: https://doi.org/10.1186/s12879-016-1688-7.

    Article  PubMed  PubMed Central  Google Scholar 

  10. Liu H, Rodes B, Chen CY, Steiner B. New tests for syphilis: rational design of a PCR method for detection of Treponema pallidum in clinical specimens using unique regions of the DNA polymerase I gene. J. Clin. Microbiol. 2001;39(5):1941-1946.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Reproductive Tract Infections. Global Impact and Priorities for Women’s Reproductive Health. Germain A, Holmes KK, Piot P, Wasserheit J, eds. New York, 1992.

  12. Sexually Transmitted and Other Reproductive Tract Infections. A Guide to Essential Practice. Geneva: WHO, 2005.

  13. Shaskolskiy B, Dementieva E, Leinsoo A, Runina A, Vorobyev D, Plakhova X, Kubanov A, Deryabin D, Gryadunov D. Drug resistance mechanisms in bacteria causing sexually transmitted diseases and associated with vaginosis. Front. Microbiol. 2016;7:747. doi: https://doi.org/10.3389/fmicb.2016.00747.

    Article  PubMed  PubMed Central  Google Scholar 

  14. Zimenkov DV, Kulagina EV, Antonova OV, Krasnova MA, Chernyaeva EN, Zhuravlev VY, Kuz’min AV, Popov SA, Zasedatelev AS, Gryadunov DA. Evaluation of a low-density hydrogel microarray technique for mycobacterial species identification. J. Clin. Microbiol. 2015;53(4):1103-1114.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Zimenkov DV, Kulagina EV, Antonova OV, Zhuravlev VY, Gryadunov DA. Simultaneous drug resistance detection and genotyping of Mycobacterium tuberculosis using a low-density hydrogel microarray. J. Antimicrob. Chemother. 2016; 71(6):1520-1531.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to B. L. Shaskol’skii.

Additional information

Translated from Byulleten’ Eksperimental’noi Biologii i Meditsiny, Vol. 164, No. 7, pp. 66-72, July, 2017

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Leinsoo, A.T., Shaskol’skii, B.L., Dement’eva, E.I. et al. Oligonucleotide Microchip for the Identification of Infectious Agents of Reproductive System with Simultaneous Analysis of Determinants of Resistance to Antimicrobial Substances. Bull Exp Biol Med 164, 54–60 (2017). https://doi.org/10.1007/s10517-017-3925-5

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10517-017-3925-5

Key Words

Navigation