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Micromonospora yasonensis sp. nov., isolated from a Black Sea sediment

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Abstract

A Micromonospora strain, designated DS3186T, isolated from sediment collected from the Black Sea off the Yason Peninsula, Ordu, Turkey, was examinated using a polyphasic approach. The strain was found to have chemotaxonomic, morphological and phylogenetic properties consistent with its clasification in the genus Micromonospora. A comparative 16S rRNA gene sequence analysis showed that the strain was closely related to the type strains of Micromonospora olivasterospora (99.0 %), Micromonospora equina (98.8 %), Micromonospora rhizosphaerae (98.8 %) and Micromonospora viridifaciens (98.8 %); low levels of DNA–DNA relatednes were found between the isolate and the M. olivasterospora and M. rhizosphaerae strains. Corresponding phylogenetic analysis based on partial gyrB gene sequences showed that strain DS3186T formed a subclade with the type strains of Micromonospora eburnea, M. equina, Micromonospora narathiwatensis and M. viridifaciens. Strain DS3186T was distinguished from its close phylogenetic neighbours using a combination of chemotaxonomic, morphological and physiological properties. Consequently, it is proposed that strain DS3186T represents a novel Micromonospora species for which the name Micromonospora yasonensis sp. nov. is proposed. The type strain is DS3186T (=DSM 45980T = KCTC 29433T).

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Acknowledgments

We gratefully acknowledge support from Ondokuz Mayis University (project no. PYO. FEN. 1901.12.014) and are indebted to Gabriele Pötter (DSMZ) for undertaking the chemotaxonomic analyses. LC thanks the School of Biology (Newcastle University) for a 2 years postdoctoral contract.

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Authors and Affiliations

  1. Department of Bioengineering, Faculty of Engineering and Architecture, Sinop University, 57000, Nasuhbasoglu-Sinop, Turkey

    Aysel Veyisoglu

  2. School of Biology, Newcastle University, Ridley Building, Newcastle upon Tyne, NE1 7RU, UK

    Lorena Carro, Hans-Peter Klenk & Michael Goodfellow

  3. Biology Department, Faculty of Science, Anadolu University, 26470, Eskisehir, Turkey

    Kiymet Guven

  4. Science Teaching Programme, Gazi Faculty of Education, Gazi University, Ankara, Turkey

    Demet Cetin

  5. Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124, Brunswick, Germany

    Cathrin Spröer & Peter Schumann

  6. Department of Biology, Faculty of Art and Science, Ondokuz Mayis University, 55139, Kurupelit-Samsun, Turkey

    Nevzat Sahin

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  1. Aysel Veyisoglu
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Correspondence to Nevzat Sahin.

Additional information

The GenBank accession number for the 16S rRNA gene sequence of Micromonospora yasonensis DS3186T (=DSM 45980T = KCTC 29433T) is JN989295. The GenBank accession numbers for the gyrB gene sequences for strains Micromonospora yasonensis DS3186T and Micromonospora equina DSM 45644T are KF818376 and JX885646 respectively.

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Veyisoglu, A., Carro, L., Guven, K. et al. Micromonospora yasonensis sp. nov., isolated from a Black Sea sediment. Antonie van Leeuwenhoek 109, 1019–1028 (2016). https://doi.org/10.1007/s10482-016-0701-x

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