Skip to main content
Log in

Streptomyces nanningensis sp. nov. a novel Streptomycete from forest soil

  • Published:
Antonie van Leeuwenhoek Aims and scope Submit manuscript

Abstract

A strain YIM 33098T (= CCTCC AA001027T = DSM 41831T) was isolated from a forest soil sample collected from Nanning in Guangxi Province, China, in the course of screening for producers of new drug lead compounds. This strain was identified by using a polyphasic approach. The results showed that it should be assigned to the genus Streptomyces. An almost complete 16S rRNA gene sequence of the strain was determined and compared with those of representative Streptomyces species. Strain YIM 33098T was clustered in the same subclade with Streptomyces tendae ATCC19812T and Streptomyces eurythermus ATCC14975T. Similarities of strain YIM 33098T with the two strains were 97.35% and 97.42%, respectively. Based on the phenotypic and genotypic evidence, it is therefore proposed that strain YIM 33098T should be classified in the genus Streptomyces as a new species under the name of Streptomyces nanningensis sp. nov.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • B. Becker M.P. Lechevalier R.E. Gordon H.A. Lechevalier (1964) ArticleTitleRapid differentiation between Nocardia Streptomyces by paper chromatography of whole-cell hydrolysates Appl. Microbiol. 12 421–423 Occurrence Handle1:STN:280:DyaF2M%2FitVeltw%3D%3D Occurrence Handle14215972

    CAS  PubMed  Google Scholar 

  • J. Brosius M.L. Palmer J.P. Kennedy H.P. Noller (1978) ArticleTitleComplete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli Proc. Natl. Acad. Sci. USA 75 4801–4805 Occurrence Handle1:CAS:528:DyaE1MXmsl2gtw%3D%3D Occurrence Handle368799

    CAS  PubMed  Google Scholar 

  • J. Chun H.-D. Youn Y.-I. Yim H. Lee M.Y. Kim Y.C. Hah S.-O. Kang (1997) ArticleTitleStreptomyces seoulensis sp.nov. Int. J. Syst. Bacteriol. 47 492–498 Occurrence Handle1:STN:280:DyaK2s3ls12gtw%3D%3D Occurrence Handle9103639

    CAS  PubMed  Google Scholar 

  • R. Corbaz L. Ettinger E. Gaumann W. Keller-Schierlein F. Kradolfer Lneipp V. Prelog P. Reusser H. Zahner (1957) ArticleTitleStoffwechselproducte von Actinomyceten. 7. Echinomycin. Helv Chim. Acta. 40 199–204 Occurrence Handle1:CAS:528:DyaG2sXmt1yksw%3D%3D

    CAS  Google Scholar 

  • J. De Ley H. Cattoir A. Reynaerts (1970) ArticleTitleThe quantitative measurement of DNA hybridization from renaturation rates Eur. J. Biochem. 12 133–142 Occurrence Handle1:CAS:528:DyaE3cXnsVOgtg%3D%3D Occurrence Handle4984993

    CAS  PubMed  Google Scholar 

  • L. Ettlinger R. Corbaz R. Hutter (1958) ArticleTitleZur systematic der Actinomyceten4. Eine arteinteilung der gattung Streoptomyces Waksman et Henrici Arch. Mikribiol. 31 326–358

    Google Scholar 

  • J. Felsenstein (1985) ArticleTitleConfidence limits on phylogenies: an approach using the bootstrap Evolution 39 783–791

    Google Scholar 

  • M. Hayakawa H. Nonomua (1987) ArticleTitleHumic acid–vitamin agara new medium for the selective isolation of soil actinomycetes J. Ferment. Technol. 65 501–509 Occurrence Handle1:CAS:528:DyaL1cXjtlKi

    CAS  Google Scholar 

  • D.A. Hopwood M.J. Bill K.F. Charter T. Kieser C.J. Bruton H.M. Kieser D.J. Lydiate C.P. Smith J.M. Ward H. Schrempf (1985) Genetic manipulation of streptomycetes: a laboratory manual John Innes Foundation NorwichUnited Kingdom

    Google Scholar 

  • V.A.R. Huss H. Festl K.-H. Schleifer (1983) ArticleTitleStudies on the spectrophotometric determination of DNA hybridization from renaturation rates Syst. Appl. Microbiol. 4 184–192 Occurrence Handle1:CAS:528:DyaL3sXktlGmt7s%3D

    CAS  Google Scholar 

  • K.-D. Jahnke (1992) ArticleTitleBASIC computer program for evaluation of spectroscopic DNA renaturation data from Gilford System 2600 spectrophotometer on a PC/XT/AT type personal computer J. Microbiol. Meth. 15 61–73

    Google Scholar 

  • Kelly K.L. 1964. Inter-Society Color Council-National Bureau of standards color-name charts illustrated with centroid colors published in US.

  • M. Kimura (1980) ArticleTitleA simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences J. Mol. Evol. 16 111–120 Occurrence Handle1:CAS:528:DyaL3MXmtFSktg%3D%3D Occurrence Handle7463489

    CAS  PubMed  Google Scholar 

  • D.P. Labeda M.P. Lechevalier R.T. Testa (1997) ArticleTitleStreptomyces stramineus sp. nov., a new species of the verticillate streptomycetes Int. J. Syst. Bacteriol. 47 747–753 Occurrence Handle1:CAS:528:DyaK2sXkvFChtLc%3D Occurrence Handle9226907

    CAS  PubMed  Google Scholar 

  • H.A. Lechevalier M.P. Lechevalier (1970a) A critical evaluation of the genera of aerobic actinomycetes H. Prauser (Eds) The Actinomycetes Gustav Fischer Verlag Jena 393–405

    Google Scholar 

  • M.P. Lechevalier H.A. Lechevalier (1970b) ArticleTitleChemical composition as a criterion in the classification of aerobic actinomycetes Int. J. Syst. Bacteriol. 20 435–443 Occurrence Handle1:CAS:528:DyaE3sXltFaqur0%3D

    CAS  Google Scholar 

  • M.P. Lechevalier H.A. Lechevalier (1980) The chemotaxonomy of actinomycetes Dietz Thayer (Eds) Actinomycete Taxonomy Society for Industrial Microbiology Arlington, VA 22–291

    Google Scholar 

  • R.D.M. Page (1996) ArticleTitleTREEVIEW: an application to display phylogenetic trees on personal computers Comp. Appl. Biosci. 12 357–358 Occurrence Handle1:STN:280:DyaK2s%2FlvVSgtg%3D%3D Occurrence Handle8902363

    CAS  PubMed  Google Scholar 

  • N. Saitou M. Nei (1987) ArticleTitleThe neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 406–425 Occurrence Handle1:STN:280:DyaL1c7ovFSjsA%3D%3D Occurrence Handle3447015

    CAS  PubMed  Google Scholar 

  • E.B. Shirling D. Gottlieb (1966) ArticleTitleMethods for characterization of Streptomyces species Int. J. Syst. Bacteriol. 16 313–340 Occurrence Handle10.1099/00207713-16-3-313

    Article  Google Scholar 

  • E.B. Shirling D. Gottlieb (1968) ArticleTitleCooperative description of type cultures of Streptomyces. II. Species descriptions from first study Int. J. Syst. Bacteriol. 18 69–189

    Google Scholar 

  • J.D. Thompson T.J. Gibson F. Plewniak F. Jeanmougin D.G. Higgins (1997) ArticleTitleThe Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 24 4876–4882

    Google Scholar 

  • S.T. Williams M. Goodfellow G. Alderson E.M.H. Wellington P.H.A. Sneath M.J. Sakin (1983) ArticleTitleNumerical classification of Streptomycesrelated genera J. Gen. Microbiol. 129 174–1813

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Cheng-Lin Jiang.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Jiang, Y., Li, WJ., Xu, P. et al. Streptomyces nanningensis sp. nov. a novel Streptomycete from forest soil. Antonie Van Leeuwenhoek 87, 189–194 (2005). https://doi.org/10.1007/s10482-004-3720-y

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10482-004-3720-y

Keywords

Navigation