Adams J, Kelly B, Waits L (2003) Using faecal DNA sampling and GIS to monitor hybridization between red wolves (Canis rufus) and coyotes (Canis latrans). Mol Ecol 12:2175–2186
CAS
Article
PubMed
Google Scholar
Ayres KL, Overall ADJ (2004) api-calc 1.0: a computer program for calculating the average probability of identity allowing for substructure, inbreeding and the presence of close relatives. Mol Ecol Notes 4:315–318
CAS
Article
Google Scholar
Begon M (1983) Abuses of mathematical techniques in ecology: applications of Jolly's capture-recapture method. Oikos 40:155–158
Article
Google Scholar
Bonin A, Bellemain E, Bronken Eidesen P, Pompanon F, Brochmann C, Taberlet P (2004) How to track and assess genotyping errors in population genetics studies. Mol Ecol 13:3261–3273
CAS
Article
PubMed
Google Scholar
Boulanger J, McLellan BN (2001) Closure violation in DNA-based mark-recapture estimation of grizzly bear populations. Can J Zool 79:642–651
Article
Google Scholar
Boulanger J, McLellan BN, Woods JG, Proctor M, Strobeck C (2004) Sampling design and bias in DNA-based capture-mark-recapture population and density estimates of grizzly bears. J Wildl Manage 68:457–469
Article
Google Scholar
Boulanger J, Proctor M, Himmer S, Stenhouse G, Paetkau D, Cranston J (2006) An empirical test of DNA mark-recapture sampling strategies for grizzly bears. Ursus 17:149–158
Article
Google Scholar
Broquet T, Petit E (2004) Quantifying genotyping errors in noninvasive population genetics. Mol Ecol 13:3601–3608
CAS
Article
PubMed
Google Scholar
Broquet T, Menard N, Petit E (2007) Noninvasive population genetics: a review of sample source, diet, fragment length and microsatellite motif effects on amplification success and genotyping error rates. Conserv Genet 8:249–260
Article
Google Scholar
Budowle B, Eisenberg AJ, VanDaal A (2009) Validity of Low Copy Number Typing and Applications to Forensic Science. Croat Med J 50:207–217
CAS
Article
PubMed
Google Scholar
Creel S, Spong G, Sands J, Rotella J, Zeigle J, Joe L, Murphy KM, Smith DLJ (2003) Population size estimation in Yellowstone wolves with error-prone noninvasive microsatellite genotypes. Mol Ecol 12:2003–2009
Article
PubMed
Google Scholar
Cubaynes S, Pradel R, Choquet R, Duchamp C, Gaillard J, Lebreton J, Marboutin E, Miquel C, Reboulet A, Poillot C, Taberlet P, Gimenez O (2010) Importance of accounting for detection heterogeneity when estimating abundance: the case of French Wolves. Conserv Biol 24:621–626
Article
PubMed
Google Scholar
Dematteo K, Rinas M, Sede M, Davenport B, Arguelles C, Lovett K, Parker P (2009) Detection dogs: an effective technique for bush dog surveys. J Wildl Manage 73:1436–1440
Article
Google Scholar
DeYoung RW, Brennan LA (2005) Molecular genetics in wildlife science, conservation, and management. J Wildl Manage 69:1360–1361
Article
Google Scholar
Ebert C, Huckschlag D, Schulz HK, Hohmann U (2009) Can hair traps sample wild boar (Sus scrofa) randomly for the purpose of non-invasive population estimation? Eur J Wildl Res 56:583–590
Article
Google Scholar
Eggert LS, Eggert JA, Woodruff DS (2003) Estimating population sizes for elusive animals: the forest elephants of Kakum National Park, Ghana. Mol Ecol 12:1389–1402
CAS
Article
PubMed
Google Scholar
Flagstad O, Hedmark E, Landa A, Broseth H, Persson J, Andersen R, Segerstrom P, Ellegren H (2004) Colonization history and noninvasive monitoring of a reestablished wolverine population. Conserv Biol 18:676–688
Article
Google Scholar
Frantz AC, Roper TJ (2006) Simulations to assess the performance of different rarefaction methods in estimating population size using small datasets. Conserv Genet 7:315–318
Article
Google Scholar
Gazey WJ, Staley MJ (1986) Population estimation from mark-recapture experiments using a sequential Bayes algorithm. Ecology 67:941–951
Article
Google Scholar
Gleeson DM, Byrom AE, Howitt RLJ (2010) Non-invasive methods for genotyping of stoats (Mustela erminea) in New Zealand: potential for field applications. NZ J Ecol 34:000–000
Google Scholar
Guschanski K, Vigilant L, McNeilage A, Gray M, Kagoda E, Robbins M (2009) Counting elusive animals: comparing field and genetic census of the entire mountain gorilla population of Bwindi Impenetrable National Park, Uganda. Biol Conserv 142:290–300
Article
Google Scholar
Jacob GR, Debrunner F, Gugerli B, Schmid BK (2010) Field surveys of capercaillie (Tetrao urogallus) in the Swiss Alps underestimated local abundance of the species as revealed by genetic analyses of non-invasive samples. Conserv Genet 11:33–44
Article
Google Scholar
Kalinowski ST, Wagner AP, Taper M (2006) ML-RELATE: a computer program for maximum likelihood estimation of relatedness and relationship. Mol Ecol Notes 6:576–579
CAS
Article
Google Scholar
Kendall KC, Stetz JB, Boulanger J, Macleod AC, Paetkau D, White GC (2009) Demography and genetic structure of a recovering grizzly bear population. J Wildl Manage 73:3–17
Article
Google Scholar
Knapp S, Craig B, Waits L (2009) Incorporating genotyping error into non-invasive DNABased Mark–Recapture Population Estimates. J Wildl Manage 73(4):598–604
Article
Google Scholar
Kohn MH, York EC, Kamradt DA, Haught G, Sauvajot RM, Wayne R (1999) Estimating population size by genotyping faeces. Proc R Soc Lond ser B 266:657–663
CAS
Article
Google Scholar
Lebreton J-D, Pradel R (2002) Multistate recapture models: modelling incomplete individual histories. J Appl Stat 29:353–369
Article
Google Scholar
Lebreton J-D, Burnham KP, Clobert J, Anderson DR (1992) Modeling survival and testing biological hypoyhesis using marked animals: a unified approach with case studies. Ecol Monogr 62:67–118
Article
Google Scholar
Lebreton J-D, Pradel R, Clobert J (1993) The statistical analysis of survival in animal populations. Trends Ecol Evol 8:91–95
CAS
Article
PubMed
Google Scholar
Lucchini V, Fabbri E, Marucco F, Ricci S, Boitani L, Randi E (2002) Noninvasive molecular tracking of colonizing wolves (Canis lupus) packs in the Western Italian Alps. Mol Ecol 11:857–868
CAS
Article
PubMed
Google Scholar
Luikart G, Ryman N, Tallmon DA, Schwartz MK, Allendorf FW (2010) Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches. Conserv Genet 11:355–373
CAS
Article
Google Scholar
Lukacs PM (2005) Statistical aspects of using genetic markers for individual identification in capture-recapture studies. Ph.D. thesis, Colorado State University
Lukacs PM, Burnham KP (2005) Review of capture-recapture methods applicable to noninvasive genetic sampling. Mol Ecol 14:3909–3919
Article
PubMed
Google Scholar
MacKay P, Smith DA, Long RA, Parker M (2008) Scat detection dogs. In: Long RA (ed) Noninvasive survey methods for carnivores. Island Press, Washington, pp 183–222
Google Scholar
MacKenzie DI (2006) Modeling the probability of resource use: the effect of, and dealing with, detecting a species imperfectly. J Wildl Manage 70:367–374
Article
Google Scholar
Marucco F (2009) Spatial population dynamics of a recolonizing wolf population in the Western Alps. Ph.D. dissertation, University of Montana
Matejusová I, Doig F, Middlemas SJ, Mackay S, Douglas A, Armstrong JD, Cunningham CO, Snow M (2008) Using quantitative real-time PCR to detect salmonid prey in scats of grey Halichoerus grypus and harbour Phoca vitulina seals in Scotland—an experimental and field study. J Appl Ecol 45:632–640
Article
Google Scholar
McKelvey K, Schwartz MK (2004) Genetic errors associated with population estimation using non-invasive molecular tagging: problems and new solutions. J Wildl Manage 68:439–448
Article
Google Scholar
McKelvey K, Schwartz MK (2005) DROPOUT: a program to identify problem loci and samples for noninvasive genetic samples in a captutre-mark-recapture framework. Mol Ecol Notes 5:716–18
CAS
Article
Google Scholar
McKelvey K, Von Kienast J, Aubry KB, Koehler GM, Maletzke BT, Squires JR, Lindquist EL, Loch S, Schwartz MK (2006) DNA analysis and hair and scat collected along snow tracks to document the presence of Canada Lynx. Wildl Soc Bull 34:451–455
Article
Google Scholar
Miller CR, Joyce P, Waits LP (2002) Assessing allelic dropout and genotype reliability using maximum likelihood. Genetics 160:357–366
PubMed
Google Scholar
Miller CR, Joyce P, Waits LP (2005) A new method for estimating the size of small populations from genetic mark-recapture data. Ecology 14:1991–2005
CAS
Google Scholar
Mills LS, Citta JJ, Lair KP, Schwartz MK, Tallmon DA (2000) Estimating animal abundance using noninvasive DNA sampling: promise and pitfalls. Ecol Appl 10:283–294
Article
Google Scholar
Miquel C, Bellemain E, Poillot C, Bessière J, Durand A, Taberlet P (2006) Quality indexes to assess the reliability of genotypes in studies using noninvasive sampling and multiple-tube approach. Mol Ecol Notes 6:985–988
Article
Google Scholar
Morin P, Chambers K, Boesch C, Vigilant L (2001) Quantitative polymerase chain reaction analysis of DNA from noninvasive samples for accurate microsatellite genotyping of wild chimpanzees (Pan troglodytes verus). Mol Ecol 10:1835–1844
CAS
Article
PubMed
Google Scholar
Mowat G, Paetkau D (2002) Estimating marten (Martes americana) population size using hair capture and genetic tagging. Wildl Biol 8:201–209
Google Scholar
Mowat G, Strobeck C (2000) Estimating population size of grizzly bears using hair capture and genetic tagging. J Wildl Manage 64:183–193
Article
Google Scholar
Mulders R, Boulanger J, Paetkau D (2007) Estimation of population size for wolverines Gulo gulo at Daring Lake, Northwest territories, using DNA based mark-recapture methods. Wildl Biol 13:38–51
Google Scholar
Nichols JD (1992) Capture-recapture models: using marked animals to study population dynamics. Bioscience 42:94–102
Article
Google Scholar
O'Connell M, Wright JM (1997) Microsatellite DNA in fishes. Rev Fish Biol Fish 7:331–363
Article
Google Scholar
Paetkau D (2003) An empirical exploration of data quality in DNA-based population inventories. Mol Ecol 12:1375–1387
CAS
Article
PubMed
Google Scholar
Penacino G, Sala A, Corach D (2003) Are DNA tests infallible? Int Congr Ser 1239:873–877
CAS
Article
Google Scholar
Perkel J (2008) SNO genotyping: six technologies that keyed a revolution. Nat Meth 5:447–453
CAS
Article
Google Scholar
Petit E, Valiere N (2006) Estimating population size with noninvasive capture-mark-recapture data. Conserv Biol 20:1062–1073
Article
PubMed
Google Scholar
Pledger S, Efford M (1998) Correction of bias due to heterogeneous capture probability in capture-recapture studies of open populations. Biometrics 54:888–898
Article
Google Scholar
Pledger S, Pollock KH, Norris JL (2003) Open capture-recapture models with heterogeneity: I. Cormack–Jolly–Seber model. Biometrics 59:786–794
Article
PubMed
Google Scholar
Pollock KH, Nichols JD, Brownie C, Hines JE (1990) Statistical inference for capture-recapture experiments. Wildl Monogr 107:1–97
Google Scholar
Pompanon F, Bonin A, Bellemain E, Taberlet P (2005) Genotyping errors: causes, consequences and solutions. Nat Rev 6:847–859
CAS
Article
Google Scholar
Powell LA, Conroy M, Hines JE, Krementz DG (2000) Simultaneous use of mark-recapture and radiotelemetry to estimate survival, movement, and capture rates. J Wildl Manage 64:302–313
Article
Google Scholar
Pradel R, Hines JE, Lebreton J-D, Nichols JD (1997a) Capture-recapture survival models taking account of transients. Biometrics 53:60–72
Article
Google Scholar
Pradel R, Hines JE, Lebreton JD, Nichols JD (1997b) Estimating survival rate and proportion of transients using capture-recapture data from open populations. Biometrics 53:88–99
Article
Google Scholar
Prugh LR, Ritland CE, Arthur SM, Krebs CJ (2005) Monitoring coyote population dynamic by genotyping faeces. Mol Ecol 14:1585–1596
CAS
Article
PubMed
Google Scholar
Puechmaille SJ, Petit EJ (2007) Empirical evaluation of non-invasive capture-mark-recapture estimation of population size based on a single sampling session. J Appl Ecol 44:843–852
Article
Google Scholar
Roon DA, Waits LP, Kendall KC (2005) A simulation test of the effectiveness of several methods for error-checking non-invasive genetic data. Anim Conserv 8:203–215
Article
Google Scholar
Ruibal M, Peakall R, Claridge A, Firestone K (2009) Field-based evaluation of scat DNA methods to estimate population abundance of the spotted-tailed quoll (Dasyurus maculatus), a rare Australian marsupial. Wildl Res 36:721–736
CAS
Article
Google Scholar
Saks MJ, Koehler JJ (2005) The coming paradigm shift in forensic identification science. Science 309:892–895
CAS
Article
PubMed
Google Scholar
Saks MJ, Risinger DM, Rosenthal R, Thompson W (2003) Context effects in forensic science: a review and application of the science of science to crime laboratory practice in the United States. Sci Justice 43:77–90
CAS
Article
PubMed
Google Scholar
Schwartz MK, Monfort SL (2008) DNA and endocrine sampling. In: Long RA, MacKay P, Ray JC, Zielinski WJ (eds) Noninvasive survey methods for North American carnivores. Island Press, Washington
Google Scholar
Schwartz MK, Luikart G, Waples RS (2007) Genetic monitoring as a promising tool for conservation and management. Trends Ecol Evol 22:25–33
Article
PubMed
Google Scholar
Schwarz CJ, Stobo WT (1999) Estimation and effects of tag-misread rates in capture-recapture studies. Can J Fish Aquat Sci 56:551–559
Article
Google Scholar
Settlage KE, Van Manen FT, Clark JD, King TL (2008) Challenges of DNA-based mark-recapture studies of American Black Bears. J Wildl Manage 72:1035–1042
Google Scholar
Smith DA, Balls K, Cypher B, Maldonado JE (2005) Assessment of scat-detection dog surveys to determine kit fox distribution. Wildl Soc Bull 33:897–904
Article
Google Scholar
Smith DA, Ralls K, Hurt A, Adams B, Parker M, Maldonado JE (2006) Assessing reliability of microsatellite genotypes from kit fox faecal samples using genetic and GIS analysis. Mol Ecol 15:387–406
CAS
Article
PubMed
Google Scholar
Solberg KH, Bellemain E, Drageset O-M, Taberlet P, Swenson JE (2006) An evaluation of field and non-invasive genetic methods to estimate brown bear (Ursus arctos) population size. Biol Conserv 128:158–168
Article
Google Scholar
Stevick PT, Palsboll PJ, Smith TD, Bravington MV, Hammond PS (2001) Errors in identification using natural markings: rates, sources, and effects on capture-recapture estimates of abundance. Can J Fish Aquat Sci 58:1861–1870
Article
Google Scholar
Taberlet P, Griffin S, Goossens B, Questiau S, Manceau V, Escaravage N, Waits LP, Bouvet J (1996) Reliable genotyping of samples with very low DNA quantities using PCR. Nucleic Acids Res 26:3189–3194
Article
Google Scholar
Valiere N, Berthier P, Mouchiroud D, Pontier D (2002) GEMINI: software for testing the effects of genotyping errors and multitube approach for individual identification. Mol Ecol Notes 2:83–86
CAS
Google Scholar
Valiere N, Bonenfant C, Toigo C, Luikart G, Gaillard J-M, Klein F (2007) Importance of a pilot study for non-invasive genetic sampling: genotyping errors and population size estimation in red deer. Conserv Genet 8:69–78
Article
Google Scholar
Wagner AP, Creel S, Frank LG, Kalinowski ST (2007) Patterns of relatedness and parentage in an asocial, polyandrous striped hyena population. Mol Ecol 16:4356–4369
CAS
Article
PubMed
Google Scholar
Waits JL, Leberg PL (2000) Biases associated with population estimation using molecular tagging. Anim Conserv 3:191–199
Article
Google Scholar
Waits LP, Luikart G, Taberlet P (2001) Estimating the probability of identity among genotypes in natural populations: cautions and guidelines. Mol Ecol 10:249–256
CAS
Article
PubMed
Google Scholar
Wasser SK, Davenport B, Ramage ER, Hunt KE, Parker M, Clarke C, Stenhouse G (2004) Scat detection dogs in wildlife research and management: application to grizzly and black bears in the Yellowhead Ecosystem, Alberta, Canada. Can J Zool 82:475–492
Article
Google Scholar
White GC, Anderson DR, Burnham KP, Otis DL (1982) Capture-recapture and removal methods for sampling closed populations. Los Alamos National Laboratory, LA 8787-NERP, Los Alamos
Google Scholar
Williams BK, Nichols JD, Conroy MJ (2002) Analysis and management of animal populations. Academic, San Francisco
Google Scholar
Wilson GJ, Frantz AC, Pope LC, Roper TJ, Burke TA, Cheeseman CL, Delahay RJ (2003) Estimation of badger abundance using faecal DNA typing. J Appl Ecol 40:658–666
Article
Google Scholar
Wright JA, Barker RJ, Schofield MR, Frantz AC, Byrom AE, Gleeson DM (2009) Incorporating genotyping uncertainty into mark-recapture-type models for estimating abundance using DNA samples. Biometrics 65:833–840
CAS
Article
PubMed
Google Scholar
Yoshizaki J (2007) Use of natural tags in closed population capture-recapture studies: modelling misidentification. Dissertation, North Carolina State University
Zhan X, Li M, Zhang Z, Goossens B, Chen Y, Wang H, Bruford MW, Wei F (2006) Molecular censusing doubles giant panda population estimate in a key nature reserve. Curr Biol 16:R451–R452
CAS
Article
PubMed
Google Scholar
Zielinski WJ, Schlexer FV, Pilgrim KL, Schwartz MK (2006) Testing the efficacy of two methods for snaring hair from mesocarnivores. Wildl Soc Bull 34:1152–1161
Article
Google Scholar