Skip to main content
Log in

Two-dimensional accelerated MP-RAGE imaging with flexible linear reordering

  • Research Article
  • Published:
Magnetic Resonance Materials in Physics, Biology and Medicine Aims and scope Submit manuscript

Abstract

Object

Implementation of an accelerated Magnetization Prepared RApid Gradient Echo (MP-RAGE) sequence for T1 weighted neuroimaging; exploiting modern MRI technologies to minimize scan time while preserving the image quality.

Materials and methods

A custom MP-RAGE sequence was implemented on a state-of-the-art 3T MR scanner equipped with a 32-channel receiver array head coil. The sequence utilized a shifted CAIPIRINHA k y k z under-sampling pattern combined with elliptical scanning and a two-dimensional view ordering scheme to achieve high parallel imaging acceleration factors at maintained image contrast.

Results

It could be shown that MP-RAGE accelerated in two k-space directions outperforms single direction acceleration, which is the common practice with standard view ordering. Applying the CAIPIRINHA technique in conjunction with elliptical scanning further increased this benefit.

Conclusion

By combining MP-RAGE with CAIPIRINHA sampling and elliptical scanning, the scan time can be reduced from 4–5 min to 2–3 min with insignificant reduction in image quality.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

Notes

  1. http://www.scipy.org.

  2. http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/fsl_anat.

References

  1. Mugler JP, Brookeman JR (1990) Three-dimensional magnetization-prepared rapid gradient-echo imaging (3D MP RAGE). Magn Reson Med 15:152–157

    Article  PubMed  Google Scholar 

  2. Jack CR, Bernstein MA, Fox NC, Thompson P, Alexander G, Harvey D, Borowski B, Britson PJ, Whitwell JL, Ward C, Dale AM, Felmlee JP, Gunter JL, Hill DLG, Killiany R, Schuff N, Fox-Bosetti S, Lin C, Studholme C, DeCarli CS, Krueger G, Ward HA, Metzger GJ, Scott KT, Mallozzi R, Blezek D, Levy J, Debbins JP, Fleisher AS, Albert M, Green R, Bartzokis G, Glover G, Mugler J, Weiner MW (2008) The Alzheimer’s disease neuroimaging initiative (ADNI): MRI methods. J Magn Reson Imaging 27:685–691

    Article  PubMed  PubMed Central  Google Scholar 

  3. Glasser MF, Sotiropoulos SN, Wilson JA, Coalson TS, Fischl B, Andersson JL, Xu J, Jbabdi S, Webster M, Polimeni JR, Van Essen DC, Jenkinson M (2013) The minimal preprocessing pipelines for the human connectome project. Neuroimage 80:105–124

    Google Scholar 

  4. Griswold MA, Jakob PM, Heidemann RM, Nittka M, Jellus V, Wang J, Kiefer B, Haase A (2002) Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magn Reson Med 47:1202–1210

    Article  PubMed  Google Scholar 

  5. Pruessmann KP, Weiger M, Scheidegger MB, Boesiger P (1999) SENSE: sensitivity encoding for fast MRI. Magn Reson Med 42:952–962

    Article  PubMed  CAS  Google Scholar 

  6. Breuer FA, Kannengiesser SAR, Blaimer M, Seiberlich N, Jakob PM, Griswold MA (2009) General formulation for quantitative G-factor calculation in GRAPPA reconstructions. Magn Reson Med 62:739–746

    Article  PubMed  Google Scholar 

  7. Weiger M, Pruessmann KP, Boesiger P (2002) 2D SENSE for faster 3D MRI. Magn Reson Mater Phy 14:10–19

    Article  Google Scholar 

  8. Wiggins GC, Triantafyllou C, Potthast A, Reykowski A, Nittka M, Wald LL (2006) 32-channel 3 Tesla receive-only phased-array head coil with soccer-ball element geometry. Magn Reson Med 56:216–223

    Article  PubMed  CAS  Google Scholar 

  9. Breuer FA, Blaimer M, Mueller MF, Seiberlich N, Heidemann RM, Griswold MA, Jakob PM (2006) Controlled aliasing in volumetric parallel imaging (2D CAIPIRINHA). Magn Reson Med 55:549–556

    Article  PubMed  Google Scholar 

  10. Riffel P, Attenberger UI, Kannengiesser S, Nickel MD, Arndt C, Meyer M, Schoenberg SO, Michaely HJ (2013) Highly accelerated t1-weighted abdominal imaging using 2-dimensional controlled aliasing in parallel imaging results in higher acceleration: a comparison with generalized autocalibrating partially parallel acquisitions parallel imaging. Invest Radiol 48:554–561

    Article  PubMed  Google Scholar 

  11. Bernstein MA, Fain SB, Riederer SJ (2001) Effect of windowing and zero-filled reconstruction of MRI data on spatial resolution and acquisition strategy. J Magn Reson Imaging 14:270–280

    Article  PubMed  CAS  Google Scholar 

  12. Silver MS, Joseph RI, Hoult DI (1985) Selective spin inversion in nuclear magnetic resonance and coherent optics through an exact solution of the Bloch–Riccati equation. Phys Rev A 31:2753–2755

    Article  PubMed  CAS  Google Scholar 

  13. Zur Y, Wood ML, Neuringer LJ (1991) Spoiling of transverse magnetization in steady-state sequences. Magn Reson Med 21:251–263

    Article  PubMed  CAS  Google Scholar 

  14. Roemer PB, Edelstein WA, Hayes CE, Souza SP, Mueller OM (1990) The NMR phased array. Magn Reson Med 16:192–225

    Article  PubMed  CAS  Google Scholar 

  15. Busse RF, Brau ACS, Vu A, Michelich CR, Bayram E, Kijowski R, Reeder SB, Rowley HA (2008) Effects of refocusing flip angle modulation and view ordering in 3D fast spin echo. Magn Reson Med 60:640–649

    Article  PubMed  PubMed Central  Google Scholar 

  16. Dietrich O, Raya JG, Reeder SB, Reiser MF, Schoenberg SO (2007) Measurement of signal-to-noise ratios in MR images: influence of multichannel coils, parallel imaging, and reconstruction filters. J Magn Reson Imaging 26:375–385

    Article  PubMed  Google Scholar 

  17. Jenkinson M, Beckmann CF, Behrens TEJ, Woolrich MW, Smith SM (2012) FSL. Neuroimage 62:782–790

    Article  PubMed  Google Scholar 

  18. Krueger G, Granziera C, Jack CR, Gunter JL, Littmann A, Mortamet B, Kannengiesser S, Sorensen AG, Ward CP, Reyes DA, Britson PJ, Fischer H, Bernstein MA (2012) Effects of MRI scan acceleration on brain volume measurement consistency. J Magn Reson Imaging 36:1234–1240

    Article  PubMed  PubMed Central  Google Scholar 

  19. Lin C, Bernstein MA (2008) 3D magnetization prepared elliptical centric fast gradient echo imaging. Magn Reson Med 59:434–439

    Article  PubMed  Google Scholar 

  20. Deichmann R, Good CD, Josephs O, Ashburner J, Turner R (2000) Optimization of 3-D MP-RAGE sequences for structural brain imaging. Neuroimage 12:112–127

    Article  PubMed  CAS  Google Scholar 

  21. Feiweier T (2006) US Patent US 7,728,588, B2

  22. Mugler JP, Epstein FH, Brookeman JR (1992) Shaping the signal response during the approach to steady state in three-dimensional magnetization-prepared rapid gradient-echo imaging using variable flip angles. Magn Reson Med 28:165–185

    Article  PubMed  Google Scholar 

  23. Stoecker T, Shah NJ (2006) MP-SAGE: a new MP-RAGE sequence with enhanced SNR and CNR for brain imaging utilizing square-spiral phase encoding and variable flip angles. Magn Reson Med 56:824–834

    Article  Google Scholar 

  24. Marques JP, Kober T, Krueger G, van der Zwaag W, Van de Moortele P-F, Gruetter R (2010) MP2RAGE, a self bias-field corrected sequence for improved segmentation and T1-mapping at high field. Neuroimage 49:1271–1281

    Article  PubMed  Google Scholar 

  25. Tanner M, Gambarota G, Kober T, Krueger G, Erritzoe D, Marques JP, Newbould R (2012) Fluid and white matter suppression with the MP2RAGE sequence. J Magn Reson Imaging 35:1063–1070

    Article  PubMed  Google Scholar 

  26. Wu HH, Nishimura DG (2010) 3D magnetization-prepared imaging using a stack-of-rings trajectory. Magn Reson Med 63:1210–1218

    Article  PubMed  PubMed Central  Google Scholar 

  27. Kwon KT, Wu HH, Shin T, Cukur T, Lustig M, Nishimura DG (2013) Three-dimensional magnetization-prepared imaging using a concentric cylinders trajectory. Magn Reson Med. doi:10.1002/mrm.24823

Download references

Acknowledgments

The authors acknowledge Siemens Healthcare for support in the framework of the research collaboration, coordinated by Dr. Florian Meise. Valuable comments from Dr. Thorsten Feiweier (Siemens Healthcare) are also acknowledged. We are grateful for the final review of the manuscript by Katja Neumann (DZNE Magdeburg), Prof. Oliver Speck (DZNE Magdeburg) and Prof. Monique Breteler (DZNE Bonn).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Daniel Brenner.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Brenner, D., Stirnberg, R., Pracht, E.D. et al. Two-dimensional accelerated MP-RAGE imaging with flexible linear reordering. Magn Reson Mater Phy 27, 455–462 (2014). https://doi.org/10.1007/s10334-014-0430-y

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10334-014-0430-y

Keywords

Navigation