Skip to main content

Advertisement

SpringerLink
Log in

Studies on the molecular evolution of potyviruses

  • Award
  • Published:
Journal of General Plant Pathology Aims and scope Submit manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

References

  • Farzadfar Sh, Ohshima K, Pourrahim R, Golnaraghi AR, Sajedi S, Ahoonmanesh A (2005) Reservoir weed hosts for Turnip mosaic virus in Iran. Plant Dis 89:339

    Article  Google Scholar 

  • Farzadfar Sh, Tomitaka Y, Ikematsu M, Golnaraghi AR, Pourrahim R, Ohshima K (2009) Molecular characterization of Turnip mosaic virus isolates from Brassicaceae weeds. Eur J Plant Pathol 124:45–55

    Article  CAS  Google Scholar 

  • Gibbs AJ, Ohshima K (2010) Potyviruses and the digital revolution. Annu Rev Phytopathol 48:205–223

    Article  CAS  PubMed  Google Scholar 

  • Gibbs AJ, Ohshima K, Gibbs M, García-Arenal F (2008a) More about plant virus evolution: past, present and future. In: Domingo E, Parrish CR, Holland JJ (eds) Origin and evolution of viruses, 2nd edn. Elsevier, Amsterdam, pp 229–249

    Chapter  Google Scholar 

  • Gibbs AJ, Ohshima K, Phillips MJ, Gibbs M (2008b) The prehistory of potyviruses: their initial radiation was during the dawn of agriculture. PLoS ONE 3:e2523

    Article  PubMed  Google Scholar 

  • Jenner CE, Tomimura K, Ohshima K, Hughes SL, Walsh JA (2002) Mutations in Turnip mosaic virus P3 and cylindrical inclusion proteins are separately required to overcome two Brassica napus resistance genes. Virology 300:50–59

    Article  CAS  PubMed  Google Scholar 

  • Jenner CE, Wang X, Tomimura K, Ohshima K, Ponz F, Walsh JA (2003) The dual role of the potyvirus P3 protein of Turnip mosaic virus as a symptom and avirulence determinant in brassicas. Mol Plant-Microbe Interact 16:777–784

    Article  CAS  PubMed  Google Scholar 

  • Korkmaz S, Onder S, Tomitaka Y, Ohshima K (2007) First report of Turnip mosaic virus on Brassicaceae crops in Turkey. Plant Pathol 56:719

    Article  Google Scholar 

  • Korkmaz S, Tomitaka Y, Onder S, Ohshima K (2008) Occurrence and molecular characterization of Turkish Isolates of Turnip mosaic virus. Plant Pathol 57:1155–1162

    Article  Google Scholar 

  • Kundu AK, Ohshima K, Sako N (1997) Nucleotide sequences of the coat protein genes of two Japanese zucchini yellow mosaic virus isolates. Acta Virol 41:297–301

    CAS  PubMed  Google Scholar 

  • Kundu AK, Ohshima K, Sako N, Yaegashi H (1999) Nucleotide sequences of the cylindrical inclusion protein genes of two Japanese zucchini yellow mosaic virus isolates. Acta Virol 43:57–62

    CAS  PubMed  Google Scholar 

  • Nguyen HD, Tran HTN, Ohshima K (2013a) Genetic variation of the Turnip mosaic virus population of Vietnam: a case study of founder, regional and local influences. Virus Res 171:138–149

    Article  CAS  PubMed  Google Scholar 

  • Nguyen HD, Tomitaka Y, Ho SYW, Duchêne S, Vetten H-J, Lesemann D, Walsh JA, Gibbs AJ, Ohshima K (2013b) Turnip mosaic potyvirus probably first spread to Eurasian brassica crops from wild orchids about 1000 years ago. PLoS ONE 8:e55336

    Article  CAS  PubMed  Google Scholar 

  • Ogawa T, Nakagawa A, Sayama M, Ohshima K (2008a) Ecology and control of potato tuber necrotic ringspot disease (in Japanese). Plant Protect 62:481–484

    Google Scholar 

  • Ogawa T, Tomitaka Y, Nakagawa A, Ohshima K (2008b) Genetic structure of a population of Potato virus Y inducing potato tuber necrotic ringspot disease in Japan; comparison with North American and European populations. Virus Res 131:199–212

    Article  CAS  PubMed  Google Scholar 

  • Ogawa T, Nakagawa A, Ohshima K (2011) The genome structure of a Potato virus Y collected from potatoes showing tuber necrotic ringspot disease in the Amami region of Kagoshima Prefecture (in Japanese). Kyushu Plant Protect Res 57:19–25

    Article  Google Scholar 

  • Ogawa T, Nakagawa A, Hataya T, Ohshima K (2012) The genetic structure of populations of Potato virus Y in Japan; based on the analysis of 20 full genomic sequences. J Phytopathol 160:661–673

    Article  Google Scholar 

  • Ogawa T, Nakamura S, Sayama M, Ohshima K (2013) Attenuated mutants of Potato virus Y necrotic strain produced by nitrous acid treatment and mutagenesis-in-tissue culture methods. Eur J Plant Pathol 135:745–760

    Article  CAS  Google Scholar 

  • Ohshima K (2007) Turnip mosaic virus. In: Rao GP, Kumar PL, Holguin-Pena RJ (eds) Characterization, diagnosis & management of plant viruses. Studium Press, Houston, pp 313–330

    Google Scholar 

  • Ohshima K (2009) Molecular evolution and ecology of Turnip mosaic virus (in Japanese). Plant Protect 63:21–25

    Google Scholar 

  • Ohshima K (2012) Plant potyvirus evolution: the survey of the genetic structure of populations (in Japanese). Uirusu 62:151–160

    Article  PubMed  Google Scholar 

  • Ohshima K, Tanaka M, Sako N (1996) The complete nucleotide sequence of turnip mosaic virus RNA Japanese strain. Arch Virol 141:1991–1997

    Article  CAS  PubMed  Google Scholar 

  • Ohshima K, Sako K, Hiraishi C, Nakagawa A, Matsuo K, Ogawa T, Shikata E, Sako N (2000) Potato tuber necrotic ringspot disease occurring in Japan: its association with Potato virus Y necrotic strain. Plant Dis 10:1109–1115

    Article  Google Scholar 

  • Ohshima K, Yamaguchi Y, Hirota R, Hamamoto T, Tomimura K, Tan Z, Sano T, Azuhata F, Walsh JA, Fletcher J, Chen J, Gera A, Gibbs A (2002) Molecular evolution of Turnip mosaic virus: evidence of host adaptation, genetic recombination and geographical spread. J Gen Virol 83:1511–1521

    CAS  PubMed  Google Scholar 

  • Ohshima K, Tomitaka Y, Wood JT, Minematsu Y, Kajiyama H, Tomimura K, Gibbs AJ (2007) Patterns of recombination in turnip mosaic virus genomic sequences indicate hotspots of recombination. J Gen Virol 88:298–315

    Article  CAS  PubMed  Google Scholar 

  • Ohshima K, Akaishi S, Kajiyama H, Koga R, Gibbs AJ (2010) The evolutionary trajectory of turnip mosaic virus populations adapting to a new host. J Gen Virol 91:788–801

    Article  CAS  PubMed  Google Scholar 

  • Seo J-K, Ohshima K, Lee H-G, So M, Choi H-S, Lee S-H, Sohn S-H, Kim K-H (2009) Molecular variability and genetic structure of the population of Soybean mosaic virus based on the analysis of complete genome sequences. Virology 393:91–103

    Article  CAS  PubMed  Google Scholar 

  • Tan Z, Wada Y, Chen J, Ohshima K (2004) Inter- and intralineage recombinants are common in natural populations of Turnip mosaic virus. J Gen Virol 85:2683–2696

    Article  CAS  PubMed  Google Scholar 

  • Tan Z, Gibbs AJ, Tomitaka Y, Sánchez F, Ponz F, Ohshima K (2005) Mutations in Turnip mosaic virus genomes that have adapted Raphanus sativus. J Gen Virol 86:501–510

    Article  CAS  PubMed  Google Scholar 

  • Tomimura K, Gibbs AJ, Jenner CE, Walsh JA, Ohshima K (2003) The phylogeny of Turnip mosaic virus; comparisons of 38 genomic sequences reveal a Eurasian origin and a recent ‘emergence’ in East Asia. Mol Ecol 12:2099–2111

    Article  CAS  PubMed  Google Scholar 

  • Tomimura K, Špak J, Katis N, Jenner CE, Walsh JA, Gibbs AJ, Ohshima K (2004) Comparisons of the genetic structure of populations of Turnip mosaic virus in West and East Eurasia. Virology 330:408–423

    Article  CAS  PubMed  Google Scholar 

  • Tomitaka Y, Ohshima K (2006) A phylogeographic study of the Turnip mosaic virus population in East Asia reveals an ‘emergent’ lineage in Japan. Mol Ecol 15:4437–4457

    Article  CAS  PubMed  Google Scholar 

  • Tomitaka Y, Yamashita T, Ohshima K (2007) The genetic structure of populations of Turnip mosaic virus in Kyushu and central Honshu, Japan. J Gen Plant Pathol 73:197–208

    Article  CAS  Google Scholar 

Download references

Acknowledgments

I express my deepest gratitude to Drs. A.J. Gibbs, J.A. Walsh, N. Sako, K. Tanaka, E. Shikata, M. Kojima, I. Uyeda, the late D. Hosokawa, and T. Teraoka for their encouragement and continuous support. I also express my thanks to Drs. F. Azuhata, M. Chaya, T. Hataya, H. Horita, K. Ishikawa, H. Iwai, S. Kawano, M. Kusaba, K. Mamiya, T. Maoka, A. Nakagawa, S. Nakamura, S.T. Ohki, N. Ohnishi, T. Sano, M. Sayama, H. Takahashi, M. Takeshita, S. Ueda, S. Uematsu, Y. Wada, H. Yaegashi, K. Yamashita, T. Yamashita, H. Yamamoto, T. Yonaha for their useful suggestions and research collaborations; and to J. Chen, J.K. Choi, S. Duchene, Sh. Farzadfar, J. Fletcher, M. Gibbs, late R. Goldbach, A. Golnaraghi, S. Ho, A-K. Inoue-Nagata, T. Nagata, C. Jenner, S. Korkmaz, D. Lesemann, S. Li, K-H. Kim, N. Katis, F. Ponz, J. Špak, H.T.N. Tran and H.-J. Vetten. Finally, I appreciate all the efforts and contributions by the members of the Laboratory of Plant Virology, Faculty of Agriculture, Saga University, especially by K. Tomimura, Y. Tomitaka, Z. Tan, T. Ogawa, H.D. Nguyen and A.K. Kundu. These studies were in part funded by Saga University and supported by JSPS KAKENHI Grant Number 11660051, 15580036, 17580040, 18405022 and 24405026. Furthermore, this work was in part supported by Grant-in-Aid for Research project for utilizing advanced technologies in Agriculture, Forestry and Fisheries Number 18061 from The Ministry of Agriculture, Forestry and Fisheries of Japan.

Author information

Authors and Affiliations

  1. Faculty of Agriculture, Saga University, Saga, 849-0928, Japan

    Kazusato Ohshima

Authors
  1. Kazusato Ohshima
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Kazusato Ohshima.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ohshima, K. Studies on the molecular evolution of potyviruses. J Gen Plant Pathol 79, 448–452 (2013). https://doi.org/10.1007/s10327-013-0488-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10327-013-0488-9

Keywords

Search

Navigation