Skip to main content

Crossing boundaries: the importance of cellular membranes in industrial biotechnology

We’re sorry, something doesn't seem to be working properly.

Please try refreshing the page. If that doesn't work, please contact support so we can address the problem.

Abstract

How small molecules cross cellular membranes is an often overlooked issue in an industrial microbiology and biotechnology context. This is to a large extent governed by the technical difficulties to study these transport systems or by the lack of knowledge on suitable efflux pumps. This review emphasizes the importance of microbial cellular membranes in industrial biotechnology by highlighting successful strategies of membrane engineering towards more resistant and hence better performing microorganisms, as well as transporter and other engineering strategies for increased efflux of primary and secondary metabolites. Furthermore, the benefits and limitations of eukaryotic subcellular compartmentalization are discussed, as well as the biotechnological potential of membrane vesicles.

This is a preview of subscription content, access via your institution.

We’re sorry, something doesn't seem to be working properly.

Please try refreshing the page. If that doesn't work, please contact support so we can address the problem.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

References

  1. Ahn JH, Jang YS, Lee SY (2016) Production of succinic acid by metabolically engineered microorganisms. Curr Opin Biotechnol 42:54–66

    Article  CAS  PubMed  Google Scholar 

  2. Avalos JL, Fink GR, Stephanopoulos G (2013) Compartmentalization of metabolic pathways in yeast mitochondria improves the production of branched-chain alcohols. Nat Biotechnol 31:335–341

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Baker JL, Chen L, Rosenthal JA, Putnam D, DeLisa MP (2014) Microbial biosynthesis of designer outer membrane vesicles. Curr Opin Biotechnol 29:76–84

    Article  CAS  PubMed  Google Scholar 

  4. Becker J, Reinefeld J, Stellmacher R, Schäfer R, Lange A, Meyer H, Lalk M, Zelder O, von Abendroth G, Schröder H, Haefner S, Wittmann C (2013) Systems-wide analysis and engineering of metabolic pathway fluxes in bio-succinate producing Basfia succiniciproducens. Biotechnol Bioeng 110:3013–3023

    Article  CAS  PubMed  Google Scholar 

  5. Bellmann A, Vrljić M, Pátek M, Sahm H, Krämer R, Eggeling L (2001) Expression control and specificity of the basic amino acid exporter LysE of Corynebacterium glutamicum. Microbiology 147:1765–1774

    Article  CAS  PubMed  Google Scholar 

  6. Blumhoff ML, Steiger MG, Mattanovich D, Sauer M (2013) Targeting enzymes to the right compartment: metabolic engineering for itaconic acid production by Aspergillus niger. Metab Eng 19:26–32

    Article  CAS  PubMed  Google Scholar 

  7. Brat D, Weber C, Lorenzen W, Bode HB, Boles E (2012) Cytosolic re-localization and optimization of valine synthesis and catabolism enables increased isobutanol production with the yeast Saccharomyces cerevisiae. Biotechnol Biofuels 5:65

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Bröer S, Krämer R (1991) Lysine excretion by Corynebacterium glutamicum 2. Energetics and mechanism of the transport system. Eur J Biochem 202:137–143

    Article  PubMed  Google Scholar 

  9. Cao Y, Duan ZY, Shi ZP (2014) Effect of biotin on transcription levels of key enzymes and glutamate efflux in glutamate fermentation by Corynebacterium glutamicum. World J Microbiol Biotechnol 30:461–468

    Article  CAS  PubMed  Google Scholar 

  10. Chen B, Ling H, Chang MW (2013) Transporter engineering for improved tolerance against alkane biofuels in Saccharomyces cerevisiae. Biotechnol Biofuels 6:21

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Daniel G, Volc IJ, Kubatova E (1994) Pyranose oxidase, a major source of H202 during wood degradation by Phanerochaete chrysosporium, Trametes versicolor, and Oudemansiella mucida. Appl Environ Microb 60:2524–2532

    CAS  Google Scholar 

  12. Diesveld R, Tietze N, Fürst O, Reth A, Bathe B, Sahm H, Eggeling L (2009) Activity of exporters of Escherichia coli in Corynebacterium glutamicum, and their use to increase l-threonine production. J Mol Microbiol Biotechnol 16:198–207

    Article  CAS  PubMed  Google Scholar 

  13. Dunlop MJ, Dossani ZY, Szmidt HL, Chu HC, Lee TS, Keasling JD, Hadi MZ, Mukhopadhyay A (2011) Engineering microbial biofuel tolerance and export using efflux pumps. Mol Syst Biol 7:487

    Article  PubMed  PubMed Central  Google Scholar 

  14. Fisher MA, Boyarskiy S, Yamada MR, Kong N, Bauer S, Tullman-Ercek D (2014) Enhancing tolerance to short-chain alcohols by engineering the Escherichia coli AcrB efflux pump to secrete the non-native substrate n-Butanol. ACS Synth Biol 3:30–40

    Article  CAS  PubMed  Google Scholar 

  15. Foo JL, Leong SS (2013) Directed evolution of an E. coli inner membrane transporter for improved efflux of biofuel molecules. Biotechnol Biofuels 6:81

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Haddouche R, Poirier Y, Delessert S, Sabirova J, Pagot Y, Neuvéglise C, Nicaud JM (2011) Engineering polyhydroxyalkanoate content and monomer composition in the oleaginous yeast Yarrowia lipolytica by modifying the ß-oxidation multifunctional protein. Appl Microbiol Biotechnol 91:1327–1340

    Article  CAS  PubMed  Google Scholar 

  17. Hashimoto K, Murata J, Konishi T, Yabe I, Nakamatsu T, Kawasaki H (2012) Glutamate is excreted across the cytoplasmic membrane through the NCgl1221 channel of Corynebacterium glutamicum by passive diffusion. Biosci Biotechnol Biochem 76:1422–1424

    Article  CAS  PubMed  Google Scholar 

  18. Heipieper HJ, Meinhardt F, Segura A (2003) The cis-trans isomerase of unsaturated fatty acids in Pseudomonas and Vibrio: biochemistry, molecular biology and physiological function of a unique stress adaptive mechanism. FEMS Microbiol Lett 229:1–7

    Article  CAS  PubMed  Google Scholar 

  19. Hermans MA, Neuss B, Sahm H (1991) Content and composition of hopanoids in Zymomonas mobilis under various growth conditions. J Bacteriol 173:5592–5595

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Huang X, Lu X, Li Y, Li X, Li JJ (2014) Improving itaconic acid production through genetic engineering of an industrial Aspergillus terreus strain. Microb Cell Fact 13:119

    Article  PubMed  PubMed Central  Google Scholar 

  21. Jasiński M, Stukkens Y, Degand H, Purnelle B, Marchand-Brynaert J, Boutry M (2001) A plant plasma membrane ATP binding cassette-type transporter is involved in antifungal terpenoid secretion. Plant Cell 13:1095–1107

    Article  PubMed  PubMed Central  Google Scholar 

  22. Kawamoto T, Kanda T, Tanaka A (2001) Preparation of an organic solvent-tolerant strain from baker’s yeast. Appl Microbiol Biotechnol 55:476–479

    Article  CAS  PubMed  Google Scholar 

  23. Kell DB, Swainston N, Pir P, Oliver SG (2015) Membrane transporter engineering in industrial biotechnology and whole cell biocatalysis. Trends Biotechnol 33:237–246

    Article  CAS  PubMed  Google Scholar 

  24. Kesty NC, Kuehn MJ (2004) Incorporation of heterologous outer membrane and periplasmic proteins into Escherichia coli outer membrane vesicles. J Biol Chem 279:2069–2076

    Article  CAS  PubMed  Google Scholar 

  25. Kind S, Kreye S, Wittmann C (2011) Metabolic engineering of cellular transport for overproduction of the platform chemical 1,5-diaminopentane in Corynebacterium glutamicum. Metab Eng 13:617–627

    Article  CAS  PubMed  Google Scholar 

  26. Kind S, Neubauer S, Becker J, Yamamoto M, Völkert M, von Abendroth G, Zelder O, Wittmann C (2014) From zero to hero- production of bio-based nylon from renewable resources using engineered Corynebacterium glutamicum. Metab Eng 25:113–123

    Article  CAS  PubMed  Google Scholar 

  27. Leaf TA, Peterson MS, Stoup SK, Somers D, Srienc F (1996) Saccharomyces cerevisiae expressing bacterial polyhydroxybutyrate synthase produces poly-3-hydroxybutyrate. Microbiol 142:1169–1180

    Article  CAS  Google Scholar 

  28. Lee JJ, Chen L, Cao B, Chen WN (2016) Engineering Rhodosporidium toruloides with a membrane transporter facilitates production and separation of carotenoids and lipids in a bi-phasic culture. Appl Microbiol Biotechnol 100:869–877

    Article  CAS  PubMed  Google Scholar 

  29. Lee SY, Park JH (2010) Integration of systems biology with bioprocess engineering: l-Threonine production by systems metabolic engineering of Escherichia coli. In: Wittmann C, Krull R (eds) Biosystems engineering I: Creating superior biocatalysts. Springer Science & Business Media, Berlin, pp 1–19

    Chapter  Google Scholar 

  30. Li A, Pfelzer N, Zuijderwijk R, Brickwedde A, van Zeijl C, Punt P (2013) Reduced by-product formation and modified oxygen availability improve itaconic acid production in Aspergillus niger. Appl Microbiol Biotechnol 97:3901–3911

    Article  CAS  PubMed  Google Scholar 

  31. Li M, Li D, Huang Y, Liu M, Wang H, Tang Q, Lu F (2014) Improving the secretion of cadaverine in Corynebacterium glutamicum by cadaverine-lysine antiporter. J Ind Microbiol Biot 41:701–709

    Article  CAS  Google Scholar 

  32. Ling H, Pratomo Juwono NK, Teo WS, Liu R, Leong SS, Chang MW (2015) Engineering transcription factors to improve tolerance against alkane biofuels in Saccharomyces cerevisiae. Biotechnol Biofuels 8:231

    Article  PubMed  PubMed Central  Google Scholar 

  33. Liu P, Sun L, Sun Y, Shang F, Yan G (2016) Decreased fluidity of cell membranes causes a metal ion deficiency in recombinant Saccharomyces cerevisiae producing carotenoids. J Ind Microbiol Biotechnol 43:525–535

    Article  CAS  PubMed  Google Scholar 

  34. López NI, Pettinari MJ, Nikel PI, Méndez BS (2015) Polyhydroxyalkanoates: much more than biodegradable plastics. Adv Appl Microbiol 93:73–106

    Article  PubMed  Google Scholar 

  35. Luntz GM, Zhdanova NI, Genrich I (1986) Transport and excretion of l-lysine in Corynebacterium glutamicum. J Gen Microbiol 132:2137–2146

    Google Scholar 

  36. McBroom AJ, Johnson AP, Vemulapalli S, Kuehn MJ (2006) Outer membrane vesicle production by Escherichia coli is independent of membrane instability. J Bacteriol 188:5385–5392

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  37. Naji B, Géhin G, Bonaly R (2000) Structure of surfactants and glutamate efflux by Corynebacterium glutamicum. Process Biochem 35:759–764

    Article  CAS  Google Scholar 

  38. Nara T, Samejima H, Kinoshita S (1964) Effect of penicillin on amino acid fermentation. Agr Biol Chem 28:120–124

    Article  Google Scholar 

  39. Nakamura J, Hirano S, Ito H, Wachi M (2007) Mutations of the Corynebactetium glutamicum NCgl1221 gene, encoding a mechanosensitive channel hornolog, induce l-glutarnic acid production. Appl Environ Microbiol 73:4491–4498

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. Park M, Sun Q, Liu F, DeLisa MP, Chen W (2014) Positional assembly of enzymes on bacterial outer membrane vesicles for cascade reactions. PLoS One 9:e97103

    Article  PubMed  PubMed Central  Google Scholar 

  41. Peyou-Ndi MM, Watts JL, Browse J (2000) Identification and characterization of an animal delta(12) fatty acid desaturase gene by heterologous expression in Saccharomyces cerevisiae. Arch Biochem Biophys 15:399–408

    Article  Google Scholar 

  42. Roelants SL, Saerens KM, Derycke T, Li B, Lin YC, Van de Peer Y, De Maeseneire SL, Van Bogaert INA, Soetaert W (2013) Candida bombicola as a platform organism for the production of tailor-made biomolecules. Biotechnol Bioeng 110:2494–2503

    Article  CAS  PubMed  Google Scholar 

  43. Sajbidor J, Ciesarova Z, Smogrovicova D (1995) Influence of ethanol on the lipid content and fatty acid composition of Saccharomyces cerevisiae. Folia Microbiol 40:508–510

    Article  CAS  Google Scholar 

  44. Sano C (2009) History of glutamate production. Am J Clin Nutr 90:728–732

    Article  Google Scholar 

  45. Schalk M, Pastore L, Mirata MA, Khim S, Schouwey M, Deguerry F, Pineda V, Rocci L, Daviet L (2012) Toward a biosynthetic route to sclareol and amber odorants. J Am Chem Soc 134:18900–18903

    Article  CAS  PubMed  Google Scholar 

  46. Schmidt A, Bringer-Meyer S, Poralla K, Sahm H (1986) Effect of alcohols and temperature on the hopanoid content of Zymomonas mobilis. Appl Microbiol Biotechnol 25:32–36

    Article  CAS  Google Scholar 

  47. Seeley DB (1969) Surfactants in carbomycin a fermentation. US Patent 3483088 A

  48. Sheng JY, Stevens J, Feng XY (2016) Pathway compartmentalization in peroxisome of Saccharomyces cerevisiae to produce versatile medium chain fatty alcohols. Sci Rep 6:26884. doi:10.1038/srep26884

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  49. Simic P, Willuhn J, Sahm H, Eggeling L (2002) Identification of glya (encoding serine hydroxymethyltransferase) and its use together with the exporter ThrE to increase l-threonine accumulation by Corynebacterium glutamicum. Appl Environ Microbiol 68:3321–3327

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  50. Sonntag F, Schmidt I, Buchhaupt M, Schrader J (2013) Effect of linoleic acids on the release of β-carotene from carotenoid-producing Saccharomyces cerevisiae into sunflower oil. J Mol Microbiol Biotechnol 23:233–238

    Article  CAS  PubMed  Google Scholar 

  51. Steiger MG, Punt PJ, Ram AF, Mattanovich D, Sauer M (2016) Characterizing MttA as a mitochondrial cis-aconitic acid transporter by metabolic engineering. Metab Eng 35:95–104

    Article  CAS  PubMed  Google Scholar 

  52. Swings J, De Ley J (1977) The biology of Zymomonas. Bacteriol Rev 41:1–46

    CAS  PubMed  PubMed Central  Google Scholar 

  53. Takinami K, Yoshii H, Tsuri H, Okada H (1965) Biochemical effects of fatty acids and its derivatives on glutamic acid fermentation Part III. Biotin-Tween 60 relationship in the accumulation of l-glutamic acid and the growth of Brevibacterium lactofermentum. Agric Biol Chem 29:351–359

    CAS  Google Scholar 

  54. Tan Z, Yoon JM, Nielsen DR, Shanks JV, Jarboe LR (2016) Membrane engineering via trans unsaturated fatty acids production improves Escherichia coli robustness and production of biorenewables. Metab Eng 35:105–113

    Article  CAS  PubMed  Google Scholar 

  55. Trikka FA, Nikolaidis A, Athanasakoglou A, Andreadelli A, Ignea C, Kotta K, Argiriou A, Kampranis SC, Makris AM (2015) Iterative carotenogenic screens identify combinations of yeast gene deletions that enhance sclareol production. Microb Cell Fact 14:1–19

    Article  CAS  Google Scholar 

  56. Tryfona T, Bustard MT (2004) Mechanistic understanding of the fermentative l-glutamic acid overproduction by Corynebacterium glutamicum through combined metabolic flux profiling and transmembrane transport characteristics. J Chem Technol Biotechnol 79:1321–1330

    Article  CAS  Google Scholar 

  57. Toyofuku M, Tashiro Y, Hasegawa Y, Kurosawa M, Nomura N (2015) Bacterial membrane vesicles, an overlooked environmental colloid: Biology, environmental perspectives and applications. Adv Colloid Interface Sci 226(Pt A):65–77

    Article  CAS  PubMed  Google Scholar 

  58. Turner WJ, Dunlop MJ (2015) Trade-offs in improving biofuel tolerance using combinations of efflux pumps. ACS Synth Biol 16:1056–1063

    Article  Google Scholar 

  59. Verwaal R, Jiang Y, Wang J, Daran JM, Sandmann G, van den Berg JA, van Ooyen AJ (2010) Heterologous carotenoid production in Saccharomyces cerevisiae induces the pleiotropic drug resistance stress response. Yeast 27:983–998

    Article  CAS  PubMed  Google Scholar 

  60. Verwaal R, Wu L, Damveld RA, Sagt Cornelis MJ (2009) Succinic acid production in a eukaryotic cell. WO2009065778

  61. Wallace S, Balskus EP (2016) Designer micelles accelerate flux through engineered metabolism in E. coli and support biocompatible chemistry. Angew Chem Int Ed Engl 55:6023–6027

    Article  CAS  PubMed  Google Scholar 

  62. Wang Y, Zhang B, Lu L, Huang Y, Xu G (2013) Enhanced production of pigments by addition of surfactants in submerged fermentation of Monascus purpureus H1102. J Sci Food Agr 93:3339–3344

    Article  CAS  Google Scholar 

  63. Werpy TA, Petersen G (2004). Top value added chemicals from biomass. Volume 1 Results of screening for potential candidates from sugars and synthesis gas. US Department of Energy, US

  64. Yazaki K (2005) Transporters of secondary metabolites. Curr Opin Plant Biol 8:301–307

    Article  CAS  PubMed  Google Scholar 

  65. Yu AQ, Pratomo Juwono NK, Foo JL, Leong SS, Chang MW (2016) Metabolic engineering of Saccharomyces cerevisiae for the overproduction of short branched-chain fatty acids. Metab Eng 34:36–43

    Article  CAS  PubMed  Google Scholar 

  66. Zahoor A, Lindner SN, Wendisch VF (2012) Metabolic engineering of Corynebacterium glutamicum aimed at alternative carbon sources and new products. Comput Struct Biotechnol J 76:1422–1424

    Google Scholar 

Download references

Acknowledgements

Sylwia Jezierska received a doctoral (PhD) grant Strategic Basic Research from the Research Foundation Flanders (FWO), Grant Number 151610. The authors wish to thank Barbara Toch for revising the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Inge N. A. Van Bogaert.

Additional information

This paper is part of the Special Issue of JIMB dedicated to Arny Demain on the occasion of his 90th birthday in 2017.

Rights and permissions

Reprints and Permissions

About this article

Verify currency and authenticity via CrossMark

Cite this article

Jezierska, S., Van Bogaert, I.N.A. Crossing boundaries: the importance of cellular membranes in industrial biotechnology. J Ind Microbiol Biotechnol 44, 721–733 (2017). https://doi.org/10.1007/s10295-016-1858-z

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10295-016-1858-z

Keywords

  • Efflux
  • Subcellular compartmentalization
  • Cellular membrane
  • Toxicity
  • Export