Skip to main content
Log in

Secretome analysis of the thermophilic xylanase hyper-producer Thermomyces lanuginosus SSBP cultivated on corn cobs

  • Genetics and Molecular Biology of Industrial Organisms
  • Published:
Journal of Industrial Microbiology & Biotechnology

Abstract

Thermomyces lanuginosus is a thermophilic fungus known for its ability to produce industrially important enzymes including large amounts of xylanase, the key enzyme in hemicellulose hydrolysis. The secretome of T. lanuginosus SSBP was profiled by shotgun proteomics to elucidate important enzymes involved in hemicellulose saccharification and to characterise the presence of other industrially interesting enzymes. This study reproducibly identified a total of 74 proteins in the supernatant following growth on corn cobs. An analysis of proteins revealed nine glycoside hydrolase (GH) enzymes including xylanase GH11, β-xylosidase GH43, β-glucosidase GH3, α-galactosidase GH36 and trehalose hydrolase GH65. Two commercially produced Thermomyces enzymes, lipase and amylase, were also identified. In addition, other industrially relevant enzymes not currently explored in Thermomyces were identified including glutaminase, fructose-bisphosphate aldolase and cyanate hydratase. Overall, these data provide insight into the novel ability of a cellulase-free fungus to utilise lignocellulosic material, ultimately producing a number of enzymes important to various industrial processes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  1. Adav SS, Chao LT, Sk Sze (2012) Quantitative secretomic analysis of Trichodermareesei strains reveals enzymatic composition for lignocellulosic biomass degradation. Mol Cell Proteomics 11(M111):012419

    PubMed  Google Scholar 

  2. Akoh CC, Lee GC, Liaw YC, Huang TH, Shaw JF (2004) GDSL family of serine esterases/lipases. Prog Lipid Res 43:534–552

    Article  PubMed  CAS  Google Scholar 

  3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410

    Article  PubMed  CAS  Google Scholar 

  4. Baxter J, Cummings SP (2006) The current and future applications of microorganism in the bioremediation of cyanide contamination. Antonie Van Leeuwenhoek 90:1–17

    Article  PubMed  CAS  Google Scholar 

  5. Bendtsen JD, Jensen LJ, Blom N, von Heijne G, Brunak S (2004) Feature-based prediction of non-classical and leaderless protein secretion. Protein Eng Des Sel 17:349–356

    Article  PubMed  CAS  Google Scholar 

  6. ChoiJ ParkJ, Kim D, Jung K, Kang S, Lee YH (2010) Fungal secretome database: integrated platform for annotation of fungal secretomes. BMC Genom 11:105–119

    Article  Google Scholar 

  7. Fernandez-Lafuente R (2010) Lipase from Thermomyceslanuginosus: uses and prospects as an industrial biocatalyst. J Mol Catal B Enzym 62:197–212

    Article  CAS  Google Scholar 

  8. Foley K (1978) Physical properties, chemical properties and uses of the Anderson’s corncob products. The Andersons, Maumee

    Google Scholar 

  9. Forney LJ, Reddy CA, Tien M, Aust SD (1982) The involvement of hydroxyl radical derived from hydrogen peroxide in lignin degradation by the white rot fungus Phanerochaetechrysosporium. J Biol Chem 257:11455–11462

    PubMed  CAS  Google Scholar 

  10. Gomes J, Purkarthofer H, Hayn M, Kapplmüller J, Sinner M, Steiner W (1993) Production of a high level of cellulase-free xylanase by the thermophilic fungus Thermomyces lanuginosus in laboratory and pilot scales using lignocellulosic materials. Appl Microbiol Biotechnol 39:700–707

    Article  CAS  Google Scholar 

  11. Gupta R, Gigras P, Mohapatra H, Goswami VK, Chauhan B (2003) Microbial α-amylases: a biotechnological perspective. Process Biochem 38:1599–1616

    Article  CAS  Google Scholar 

  12. Jensen Kenneth AJ, Ryan ZC, VandenWymelenberg A, Cullen D, Hammel KE (2002) An NADH: quinoneoxidoreductase active during biodegradation by the brown-rot basidiomycete Gloeophyllum trabeum. Appl Environ Microbiol 68:2699–2703

    Article  Google Scholar 

  13. Jun H, Guangye H, Daiwen C (2013) Insights into enzyme secretion by filamentous fungi: comparative proteome analysis of Trichoderma reesei grown on different carbon sources. J Proteomics 89:191–201

    Article  PubMed  Google Scholar 

  14. Keller A, Nesvizhskii AI, Kolker E, Aebersold R (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by ms/ms and database search. Anal Chem 74:5383–5392

    Article  PubMed  CAS  Google Scholar 

  15. Kunamneni A, Permaul K, Singh S (2005) Amylase production in solid state fermentation by the thermophilic fungus Thermomyces lanuginosus. J Biosci Bioeng 100:168–171

    Article  PubMed  CAS  Google Scholar 

  16. Labbé G, de Groot S, Rasmusson T, Milojevic G, Dmitrienko GI, Guillemette JG (2011) Evaluation of four microbial Class II fructose 1,6-bisphosphate aldolase enzymes for use as biocatalysts. Protein Exp Purif 80:224–233

    Article  Google Scholar 

  17. Lin J, Ndlovu LM, Singh S, Pillay B (1999) Purification and biochemical characteristics of β-D-xylanase from a thermophilic fungus, Thermomyces lanuginosus-SSBP. Biotechnol Appl Biochem 30:73–79

    PubMed  CAS  Google Scholar 

  18. Lin J, Pillay B, Singh S (1999) Purification and biochemical characteristics of β-d-glucosidase from a thermophilic fungus, Thermomyces lanuginosus-SSBP. Biotechnol Appl Biochem 30:81–87

    PubMed  CAS  Google Scholar 

  19. Löliger J (2000) Function and importance of glutamate for savory foods. J Nutr 130:915

    Google Scholar 

  20. Lu X, Sun J, Nimtz M, Wissing J, Zeng AP, Rinas U (2010) The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate. Microb Cell Fact 9:23–35

    Article  PubMed  PubMed Central  Google Scholar 

  21. Luo W, Wang J, Liu X, Li H, Pan H, Gu Q, Yu X (2013) A facile and efficient pretreatment of corncob for bioproduction of butanol. Bioresour Technol 140:86–89

    Article  PubMed  CAS  Google Scholar 

  22. Manavalan T, Manavalan A, Thangavelu KP, Heese K (2012) Secretome analysis of Ganoderma lucidum cultivated in sugarcane bagasse. J Proteomics 77:298–309

    Article  PubMed  CAS  Google Scholar 

  23. McClendon SD, Batth T, Petzold CJ, Adams PD, Simmons BA, Singer SW (2012) Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions. Biotechnol Biofuels 5:54–62

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  24. Mchunu NP, Permaul K, Abdul Rahman AY, Saito JA, Singh S, Alam M (2013) Xylanase superproducer: genome sequence of a compost-loving thermophilic fungus, Thermomyces lanuginosus strain SSBP. Genome Announc 1(3):e00388–e00413

    Article  PubMed  PubMed Central  Google Scholar 

  25. Nesvizhskii AI, Keller A, Kolker E, Aebersold R (2003) A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 75:4646–4658

    Article  PubMed  CAS  Google Scholar 

  26. Park BH, Karpinets TV, Syed MH, Leuze MR, Uberbacher EC (2010) CAZymes analysis toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. Glycobiology 20:1574–1584

    Article  PubMed  CAS  Google Scholar 

  27. Petersen TN, Brunak S, von Heijne G, Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8:785–786

    Article  PubMed  CAS  Google Scholar 

  28. Puchart R, Vršanská M, Bhat MK, Biely P (2000) Purification and characterization of α-galactosidase from a thermophilic fungus Thermomyces lanuginosus. Biochimica Et Biophysica Acta (BBA) 1524:27–37

    Article  CAS  Google Scholar 

  29. Ravalason H, Grisel S, Chevret D, Favel A, Berrin JG, Sigoillot JC, Herpoël-Gimbert I (2012) Fusarium verticillioides secretome as a source of auxiliary enzymes to enhance saccharification of wheat straw. Bioresour Technol 114:589–596

    Article  PubMed  CAS  Google Scholar 

  30. Rezessy-SzabóaJM, Nguyena QD, HoschkeaA, Braetb C, HajóscG, Claeyssens M (2007) A novel thermostable α-galactosidase from the thermophilic fungus Thermomyces lanuginosus CBS 395.62/b: purification and characterization. Biochimica et Biophysica Act 1770:55–62

    Article  Google Scholar 

  31. Ribeiro DA, Cota J, Alvarez TM, Brüchli F, Bragato J, Pereira BMP, Pauletti BA, Jackson G, Pimenta MTB, Murakami MT, Camassola M, Ruller R, Dillon AJP, Pradella JGC, PaesLeme AF, Squina FM (2012) The Penicillium echinulatum secretome on sugar cane bagasse. PLoS One 7:e50571

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  32. Roberts J, McGregor WG (1991) Inhibition of mouse retroviral disease by bioactive glutaminase-asparaginase. J Gen Virol 72:299–305

    Article  PubMed  CAS  Google Scholar 

  33. Royer JC, Nakas JP (1990) Simple, sensitive zymogram technique for detection of xylanase activity in polyacrylamide gels. Appl Environ Microbiol 56:1516–1517

    PubMed  CAS  PubMed Central  Google Scholar 

  34. Saykhedkar S, Ray A, Ayoubi-Canaan P, Hartson SD, Prade R, Mort AJ (2012) A time course analysis of the extracellular proteome of Aspergillus nidulans growing on sorghum stover. Biotechnol Biofuels 5:52–68

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  35. Schlacher A, Holzmann K, Hayn M, Steiner W, Schwab H (1996) Cloning and characterization of the gene for the thermostable xylanase XynA from Thermomyces lanuginosus. J Biotechnol 49:211–218

    Article  PubMed  CAS  Google Scholar 

  36. Shrivastava S, Shukla P, Deepalakshmi P, Mukhopadhyay K (2013) Characterization, cloning and functional expression of novel xylanase from Thermomyces lanuginosus SS-8 isolated from self-heating plant wreckage material. World J Microbiol Biotechnol 29:2407–2415

    Article  PubMed  CAS  Google Scholar 

  37. Singh S, Madlala AM, Prior BA (2003) Thermomyceslanuginosus: properties of strains and their hemicellulases. FEMS Microbiol Rev 27:3–16

    Article  PubMed  CAS  Google Scholar 

  38. Singh S, Pillay B, Dilsook V, Prior BA (2000) Production and properties of hemicellulases by a Thermomyces lanuginosus strain. J Appl Microbiol 88:975–982

    Article  PubMed  CAS  Google Scholar 

  39. Tapiero H, Mathé G, Couvreur P, Tew KD II (2002) Glutamine and glutamate. Biomed Pharmacother 56:446–457

    Article  PubMed  CAS  Google Scholar 

  40. Toldra F, Aristoy MC, Flores M (2000) Contribution of muscle aminopeptidases to flavor development in dry-cured ham. Food Res Int 33:181–185

    Article  CAS  Google Scholar 

  41. Vuong TV, Vesterinen AH, Foumani M, Juvonen M, Seppälä J, Tenkanen M, Master ER (2013) Xylo- and cello-oligosaccharide oxidation by gluco-oligosaccharide oxidase from Sarocladium strictum and variants with reduced substrate inhibition. Biotechnol Biofuels 6:148–161

    Article  PubMed  CAS  PubMed Central  Google Scholar 

Download references

Acknowledgments

The work conducted at the Durban University of Technology (DUT) was supported by grants from DUT and the National Research Foundation, Republic of South Africa. The work conducted by the Joint BioEnergy Institute was supported by the Office of Science, Office of Biological and Environmental Research, of the US Department of Energy under Contract No. DE-AC02-05CH11231.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to S. Singh.

Electronic supplementary material

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Winger, A.M., Heazlewood, J.L., Chan, L.J.G. et al. Secretome analysis of the thermophilic xylanase hyper-producer Thermomyces lanuginosus SSBP cultivated on corn cobs. J Ind Microbiol Biotechnol 41, 1687–1696 (2014). https://doi.org/10.1007/s10295-014-1509-1

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10295-014-1509-1

Keywords

Navigation