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Identification of a xylulokinase catalyzing xylulose phosphorylation in the xylose metabolic pathway of Kluyveromyces marxianus NBRC1777

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Journal of Industrial Microbiology & Biotechnology

Abstract

Xylulokinase is one of the key enzymes in xylose metabolism and fermentation, and fine-tuned expression of xylulokinase can improve xylose fermentation in yeast. To improve the efficiency of xylose fermentation in Kluyveromyces marxianus, the gene KmXYL3, which encodes a d-xylulokinase (E.C. 2.7.1.17), was isolated from K. marxianus NBRC1777. KmXYL3 was expressed in Escherichia coli BL21 (DE3) cells, and the specific activity of the resulting recombinant purified xylulokinase was 23.5 mU/mg. Disruption of KmXYL3 resulted in both loss of xylitol utilization and marked decrease in xylose utilization, proving that KmXYL3 encodes a xylulokinase that catalyzes the reaction from xylulose to xylulose 5-phosphate in the xylose metabolic pathway. The slow assimilation of xylose observed in the KmXYL3-disrupted strain indicates that KmXYL3 is critical for xylose and xylitol utilization; however, K. marxianus utilizes a bypass pathway for xylose assimilation, and this pathway does not involve xylitol or xylulose.

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References

  1. Anil J (2002) Biofuel from D-xylose: the second most abundant sugar. Resonance 7:50–58

    Article  Google Scholar 

  2. Antoni D, Zverlov VV, Schwarz WH (2007) Biofuels from microbes. Appl Microbiol Biotechnol 77:23–35

    Article  PubMed  CAS  Google Scholar 

  3. Argueso JL, Carazzolle MF, Mieczkowski PA, Duarte FM, Netto OVC, Missawa SK, Galzerani F, Costa GGL, Vidal RO, Noronha MF, Dominska M, Andrietta MGS, Andrietta SR, Cunha AF, Gomes LH, Tavares FCA, Alcarde AR, Dietrich FS, McCusker JH, Petes TD, Pereira GAG (2009) Genome structure of a S. cerevisiae strain widely used in bioethanol production. Genome Res 19:2258–2270

    Article  PubMed  CAS  Google Scholar 

  4. Banat IM, Marchant R (1995) Characterization and potential industrial applications of 5 novel thermotolerant fermentative yeast strains. World J Microbiol Biotechnol 11:304–306

    Article  Google Scholar 

  5. Banat IM, Singh D, Marchant R (1996) The use of a thermotolerant fermentative K. marxianus IMB3 yeast strain for ethanol production. Acta Biotechnol 16:215–223

    Article  CAS  Google Scholar 

  6. Bork P, Sander C, Valencia A (1992) An ATPase domain common to prokaryotic cell-cycle proteins, sugar kinases, actin, and Hsp70 heat-shock proteins. Proc Natl Acad Sci USA 89:7290–7294

    Article  PubMed  CAS  Google Scholar 

  7. Boyle M, Barron N, McHale AP (1997) Simultaneous saccharification and fermentation of straw to ethanol using the thermotolerant yeast strain K. marxianus IMB3. Biotechnol Lett 19:49–51

    Article  CAS  Google Scholar 

  8. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254

    Article  PubMed  CAS  Google Scholar 

  9. Brodie AF, Lipmann F (1955) Identification of a gluconolactonase. J Biol Chem 212:677–685

    PubMed  CAS  Google Scholar 

  10. Di Luccio E, Petschacher B, Voegtli J, Chou HT, Stahlberg H, Nidetzky B, Wilson DK (2007) Structural and kinetic studies of induced fit in xylulose kinase from E. coli. J Mol Biol 365:783–798

    Article  PubMed  CAS  Google Scholar 

  11. Eliasson A, Christensson C, Wahlbom CF, Hahn-Hagerdal B (2000) Anaerobic xylose fermentation by recombinant S. cerevisiae carrying XYL1, XYL2, and XKS1 in mineral medium chemostat cultures. Appl Environ Microbiol 66:3381–3386

    Article  PubMed  CAS  Google Scholar 

  12. Fonseca GG, Heinzle E, Wittmann C, Gombert AK (2008) The yeast K. marxianus and its biotechnological potential. Appl Microbiol Biotechnol 79:339–354

    Article  PubMed  CAS  Google Scholar 

  13. Guo C, He P, Lu D, Shen A, Jiang N (2006) Cloning and molecular characterization of a gene coding D-xylulokinase (CmXYL3) from C. maltosa. J Appl Microbiol 101:139–150

    Article  PubMed  CAS  Google Scholar 

  14. Hahn-Hagerdal B, Karhumaa K, Jeppsson M, Gorwa-Grauslund MF (2007) Metabolic engineering for pentose utilization in S. cerevisiae. Biofuels 108:147–177

    Article  Google Scholar 

  15. Hiltunen JK, Wenzel B, Beyer A, Erdmann R, Fossa A, Kunau WH (1992) Peroxisomal multifunctional beta-oxidation protein of S. cerevisiae: molecular analysis of the Fox2 gene and gene-product. J Biol Chem 267:6646–6653

    PubMed  CAS  Google Scholar 

  16. Ho NWY, Chen ZD, Brainard AP (1998) Genetically engineered Sacccharomyces yeast capable of effective cofermentation of glucose and xylose. Appl Environ Microbiol 64:1852–1859

    PubMed  CAS  Google Scholar 

  17. Hong J, Tamaki H, Akiba S, Yamamoto K, Kumagai H (2001) Cloning of a gene encoding a highly stable endo-beta-1,4-glucanase from A. niger and its expression in yeast. J Biosci Bioeng 92:434–441

    Article  PubMed  CAS  Google Scholar 

  18. Hong J, Tamaki H, Kumagai H (2007) Cloning and functional expression of thermostable beta-glucosidase gene from T. aurantiacus. Appl Microbiol Biotechnol 73:1331–1339

    Article  PubMed  CAS  Google Scholar 

  19. Hong J, Wang Y, Kumagai H, Tamaki H (2007) Construction of thermotolerant yeast expressing thermostable cellulose genes. J Biotechnol 130:114–123

    Article  PubMed  CAS  Google Scholar 

  20. Hu YH, Rolfs A, Bhullar B, Murthy TVS, Zhu C, Berger MF, Camargo AA, Kelley F, McCarron S, Jepson D, Richardson A, Raphael J, Moreira D, Taycher E, Zuo DM, Mohr S, Kane MF, Williamson J, Simpson A, Bulyk ML, Harlow E, Marsischky G, Kolodner RD, LaBaer J (2007) Approaching a complete repository of sequence-verified protein-encoding clones for S. cerevisiae. Genome Res 17:536–543

    Article  PubMed  CAS  Google Scholar 

  21. Jin YS, Jones S, Shi NQ, Jeffries TW (2002) Molecular cloning of XYL3 (d-xylulokinase) from P. stipitis and characterization of its physiological function. Appl Environ Microbiol 68:1232–1239

    Article  PubMed  CAS  Google Scholar 

  22. Jin YS, Ni HY, Laplaza JM, Jeffries TW (2003) Optimal growth and ethanol production from xylose by recombinant S. cerevisiae require moderate d-xylulokinase activity. Appl Environ Microbiol 69:495–503

    Article  PubMed  CAS  Google Scholar 

  23. Liu YG, Chen Y (2007) High-efficiency thermal asymmetric interlaced PCR for amplification of unknown flanking sequences. Biotechniques 43:649–656

    Article  PubMed  CAS  Google Scholar 

  24. Margaritis A, Bajpai P (1982) Direct fermentation of d-xylose–ethanol by K. marxianus strains. Appl Environ Microbiol 44:1039–1041

    PubMed  CAS  Google Scholar 

  25. Meijnen JP, de Winde JH, Ruijssenaars HJ (2009) Establishment of oxidative d-xylose metabolism in P. putida S12. Appl Environ Microbiol 75:2784–2791

    Article  PubMed  CAS  Google Scholar 

  26. Nonklang S, Abdel-Banat BMA, Cha-Aim K, Moonjai N, Hoshida H, Limtong S, Yamada M, Akada R (2008) High-temperature ethanol fermentation and transformation with linear DNA in the thermotolerant yeast K. marxianus DMKU3–1042. Appl Environ Microbiol 74:7514–7521

    Article  PubMed  CAS  Google Scholar 

  27. Rodriguez-Pena JM, Cid VJ, Arroyo J, Nombela C (1998) The YGR194c (XKS1) gene encodes the xylulokinase from the budding yeast S. cerevisiae. FEMS Microbiol Lett 162:155–160

    Article  PubMed  CAS  Google Scholar 

  28. Shamanna DK, Sanderson KE (1979) Uptake and catabolism of D-xylose in S. typhimurium LT2. J Bacteriol 139:64–70

    PubMed  CAS  Google Scholar 

  29. Stephens C, Christen B, Fuchs T, Sundaram V, Watanabe K, Jenal U (2007) Genetic analysis of a novel pathway for D-xylose metabolism in C. crescentus. J Bacteriol 189:2181–2185

    Article  PubMed  CAS  Google Scholar 

  30. Stevis PE, Huang JJ, Ho NW (1987) Cloning of the P. tannophilus xylulokinase gene by complementation in E. coli. Appl Environ Microbiol 53:2975–2977

    PubMed  CAS  Google Scholar 

  31. Toivari MH, Aristidou A, Ruohonen L, Penttila M (2001) Conversion of xylose to ethanol by recombinant S. cerevisiae: importance of xylulokinase (XKS1) and oxygen availability. Metab Eng 3:236–249

    Article  PubMed  CAS  Google Scholar 

  32. Van Vleet JH, Jeffries TW (2009) Yeast metabolic engineering for hemicellulosic ethanol production. Curr Opin Biotechnol 20:300–306

    Article  PubMed  Google Scholar 

  33. Wilkins MR, Mueller M, Eichling S, Banat IM (2008) Fermentation of xylose by the thermotolerant yeast strains K. marxianus IMB2, IMB4, and IMB5 under anaerobic conditions. Process Biochem 43:346–350

    Article  CAS  Google Scholar 

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Acknowledgments

We thank Professor Tamaki Hisanori from Kagoshima University and Kumagai Hidehiko from Ishikawa Prefectural University for providing us K. marxianus YHJ010 and plasmid YEGAP. This work was supported by a grant-in-aid from the National Natural Science Foundation of China (grant no. 31070028), and the project was also sponsored by the Scientific Research Foundation for the Returned Overseas Chinese Scholars, State Education Ministry and Specialized Research Fund for the Doctoral Program of Higher Education of China (grant no. 20093402120027) and the Fundamental Research Funds for the Central Universities (grant no. WK2070000007).

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Correspondence to Jiong Hong.

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Wang, R., Zhang, L., Wang, D. et al. Identification of a xylulokinase catalyzing xylulose phosphorylation in the xylose metabolic pathway of Kluyveromyces marxianus NBRC1777. J Ind Microbiol Biotechnol 38, 1739–1746 (2011). https://doi.org/10.1007/s10295-011-0963-2

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  • DOI: https://doi.org/10.1007/s10295-011-0963-2

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