Skip to main content

Advertisement

Log in

Dissipative particle dynamics for modeling micro-objects in microfluidics: application to dielectrophoresis

  • Original Paper
  • Published:
Biomechanics and Modeling in Mechanobiology Aims and scope Submit manuscript

Abstract

The dissipative particle dynamics (DPD) technique is employed to model the trajectories of micro-objects in a practical microfluidic device. The simulation approach is first developed using an in-house Fortran code to model Stokes flow at Reynolds number of 0.01. The extremely low Reynolds number is achieved by adjusting the DPD parameters, such as force coefficients, thermal energies of the particles, and time steps. After matching the numerical flow profile with the analytical results, the technique is developed further to simulate the deflection of micro-objects under the effect of a deflecting external force in a rectangular microchannel. A mapping algorithm is introduced to establish the scaling relationship for the deflecting force between the physical device and the DPD domain. Dielectrophoresis is studied as a case study for the deflecting force, and the trajectory of a single red blood cell under the influence of the dielectrophoretic force is simulated. The device is fabricated using standard microfabrication techniques, and the experiments involving a dilute sample of red blood cells are performed at two different cases of the actuation voltage. Good agreement between the numerical and experimental results is achieved.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  • Abu-Nada E (2011) Energy conservative dissipative particle dynamics simulation of natural convection in liquids. J Heat Transf 133:112502

    Google Scholar 

  • Agarwal T, Maiti TK (2019) Dielectrophoresis-based devices for cell patterning. In: Bioelectronics and medical devices. Elsevier, pp 493–511

  • Alazzam A, Stiharu I, Bhat R, Meguerditchian AN (2011) Interdigitated comb-like electrodes for continuous separation of malignant cells from blood using dielectrophoresis. Electrophoresis 32:1327–1336

    Google Scholar 

  • Alazzam A, Mathew B, Khashan S (2017a) Microfluidic platforms for bio-applications. In: Zhang D, Wei B (eds) Advanced mechatronics and MEMS devices II. Microsystems and Nanosystems, Springer, Cham

    Google Scholar 

  • Alazzam A, Mathew B, Alhammadi F (2017b) Novel microfluidic device for the continuous separation of cancer cells using dielectrophoresis. J Sep Sci 40:1193–1200

    Google Scholar 

  • Berthier J, Silberzan P (2010) Microfluidics for biotechnology. Artech House, Boston

    Google Scholar 

  • Boek E, Coveney PV, Lekkerkerker H, van der Schoot P (1997) Simulating the rheology of dense colloidal suspensions using dissipative particle dynamics. Phys Rev E 55:3124

    Google Scholar 

  • Chen S, Doolen GD (1998) Lattice boltzmann method for fluid flows. Annu Rev Fluid Mech 30:329–364

    MathSciNet  MATH  Google Scholar 

  • Chen S, Phan-Thien N, Khoo BC, Fan XJ (2006) Flow around spheres by dissipative particle dynamics. Phys Fluids 18:103605

    MathSciNet  MATH  Google Scholar 

  • Choi S, Song S, Choi C, Park J-K (2007) Continuous blood cell separation by hydrophoretic filtration. Lab Chip 7:1532–1538

    Google Scholar 

  • Destgeer G, Sung HJ (2015) Recent advances in microfluidic actuation and micro-object manipulation via surface acoustic waves. Lab Chip 15:2722–2738

    Google Scholar 

  • Destgeer G, Lee KH, Jung JH, Alazzam A, Sung HJ (2013) Continuous separation of particles in a PDMS microfluidic channel via travelling surface acoustic waves (TSAW). Lab Chip 13:4210–4216

    Google Scholar 

  • Ermak DL, McCammon J (1978) Brownian dynamics with hydrodynamic interactions. J Chem Phys 69:1352–1360

    Google Scholar 

  • Espanol P, Warren P (1995) Statistical mechanics of dissipative particle dynamics. EPL (Europhys Lett) 30:191

    Google Scholar 

  • Fan X, Phan-Thien N, Chen S, Wu X, Yong Ng T (2006) Simulating flow of DNA suspension using dissipative particle dynamics. Phys Fluids 18:063102

    MATH  Google Scholar 

  • Gao C, Zhang P, Marom G, Deng Y, Bluestein D (2017) Reducing the effects of compressibility in DPD-based blood flow simulations through severe stenotic microchannels. J Comput Phys 335:812–827

    MathSciNet  Google Scholar 

  • Groot RD, Warren PB (1997) Dissipative particle dynamics: bridging the gap between atomistic and mesoscopic simulation. J Chem Phys 107:4423–4435

    Google Scholar 

  • Hartmann D (2010) A multiscale model for red blood cell mechanics. Biomech Model Mechanobiol 9:1–17

    Google Scholar 

  • Hoogerbrugge P, Koelman J (1992) Simulating microscopic hydrodynamic phenomena with dissipative particle dynamics. EPL (Europhys Lett) 19:155

    Google Scholar 

  • Iliescu C, Xu G, Tong WH, Yu F, Bălan CM, Tresset G, Yu H (2015) Cell patterning using a dielectrophoretic–hydrodynamic trap. Microfluid Nanofluid 19:363–373

    Google Scholar 

  • Jerabek-Willemsen M, André T, Wanner R, Roth HM, Duhr S, Baaske P, Breitsprecher D (2014) Microscale thermophoresis: interaction analysis and beyond. J Mol Struct 1077:101–113

    Google Scholar 

  • Khashan SA, Dagher S, Alazzam A, Mathew B, Hilal-Alnaqbi A (2017) Microdevice for continuous flow magnetic separation for bioengineering applications. J Micromech Microeng 27:055016

    Google Scholar 

  • Kleinstreuer C, Zhang Z, Li Z, Roberts WL, Rojas C (2008) A new methodology for targeting drug-aerosols in the human respiratory system. Int J Heat Mass Transf 51:5578–5589

    MATH  Google Scholar 

  • Kumar A, Asako Y, Abu-Nada E, Krafczyk M, Faghri M (2009) From dissipative particle dynamics scales to physical scales: a coarse-graining study for water flow in microchannel. Microfluid Nanofluid 7:467

    Google Scholar 

  • Kurita R, Hayashi K, Fan X, Yamamoto K, Kato T, Niwa O (2002) Microfluidic device integrated with pre-reactor and dual enzyme-modified microelectrodes for monitoring in vivo glucose and lactate. Sens Actuators B Chem 87:296–303

    Google Scholar 

  • Leong FY, Li Q, Lim CT, Chiam K-H (2011) Modeling cell entry into a micro-channel. Biomech Model Mechanobiol 10:755–766

    Google Scholar 

  • Liu M, Liu G (2010) Smoothed particle hydrodynamics (SPH): an overview and recent developments. Arch Comput Methods Eng 17:25–76

    MathSciNet  MATH  Google Scholar 

  • Liu M, Liu G, Zhou L, Chang J (2015) Dissipative particle dynamics (dpd): an overview and recent developments. Arch Comput Methods Eng 22:529–556

    MathSciNet  MATH  Google Scholar 

  • Mai-Duy N, Pan D, Phan-Thien N, Khoo B (2013) Dissipative particle dynamics modeling of low Reynolds number incompressible flows. J Rheol 57:585–604

    Google Scholar 

  • Marsh C, Backx G, Ernst M (1997) Static and dynamic properties of dissipative particle dynamics. Phys Rev E 56:1676

    Google Scholar 

  • Meakin P, Xu Z (2009) Dissipative particle dynamics and other particle methods for multiphase fluid flow in fractured and porous media. Progr Comput Fluid Dyn Int J 9:399–408

    Google Scholar 

  • Neethirajan S, Kobayashi I, Nakajima M, Wu D, Nandagopal S, Lin F (2011) Microfluidics for food, agriculture and biosystems industries. Lab Chip 11:1574–1586

    Google Scholar 

  • Nerguizian V, Stiharu I, Al-Azzam N, Yassine-Diab B, Alazzam A (2019) The effect of dielectrophoresis on living cells: crossover frequencies and deregulation in gene expression. Analyst 144:3853–3860. https://doi.org/10.1039/C9AN00320G

    Article  Google Scholar 

  • Ng K, Sheu T (2017) Refined energy-conserving dissipative particle dynamics model with temperature-dependent properties and its application in solidification problem. Phys Rev E 96:043302

    Google Scholar 

  • Phan-Thien N, Mai-Duy N, Khoo B (2014) A spring model for suspended particles in dissipative particle dynamics. J Rheol 58:839–867

    Google Scholar 

  • Pivkin IV, Karniadakis GE (2005) A new method to impose no-slip boundary conditions in dissipative particle dynamics. J Comput Phys 207:114–128

    MathSciNet  MATH  Google Scholar 

  • Pohl HA (1951) The motion and precipitation of suspensoids in divergent electric fields. J Appl Phys 22:869–871

    Google Scholar 

  • Pol R, Céspedes F, Gabriel D, Baeza M (2017) Microfluidic lab-on-a-chip platforms for environmental monitoring. TrAC Trends Anal Chem 95:62–68

    Google Scholar 

  • Qian C, Huang H, Chen L, Li X, Ge Z, Chen T, Yang Z, Sun L (2014) Dielectrophoresis for bioparticle manipulation. Int J Mol Sci 15:18281–18309

    Google Scholar 

  • Revenga M, Zuniga I, Espanol P (1999) Boundary conditions in dissipative particle dynamics. Comput Phys Commun 121:309–311

    Google Scholar 

  • Rothman DH, Zaleski S (2004) Lattice-gas cellular automata: simple models of complex hydrodynamics, vol 5. Cambridge University Press, Cambridge

    MATH  Google Scholar 

  • Sackmann EK, Fulton AL, Beebe DJ (2014) The present and future role of microfluidics in biomedical research. Nature 507:181

    Google Scholar 

  • Steiner T, Cupelli C, Zengerle R, Santer M (2009) Simulation of advanced microfluidic systems with dissipative particle dynamics. Microfluid Nanofluid 7:307–323

    Google Scholar 

  • Waheed W, Alazzam A, Mathew B, Christoforou N, Abu-Nada E (2018a) Lateral fluid flow fractionation using dielectrophoresis (LFFF-DEP) for size-independent, label-free isolation of circulating tumor cells. J Chromatogr B 1087:133–137

    Google Scholar 

  • Waheed W, Alazzam A, Abu-Nada E, Khashan S, Abutayeh M (2018b) A microfluidics device for 3d switching of microparticles using dielectrophoresis. J Electrostat 94:1–7

    Google Scholar 

  • Waheed W, Alazzam A, Mathew B, Abu-Nada E, Al-Khateeb AN (2018c) In: A scalabale microfluidic device for switching of microparticles using dielectrophoresis, ASME 2018 international mechanical engineering congress and exposition. American Society of Mechanical Engineers, pp V010T013A014–V010T013A014

  • Waheed W, Alazzam A, Al-Khateeb AN, Sung HJ, Abu-Nada E (2019) Investigation of DPD transport properties in modeling bioparticle motion under the effect of external forces: low Reynolds number and high Schmidt scenarios. J Chem Phys 150:054901

    Google Scholar 

  • Wang L, Flanagan LA, Jeon NL, Monuki E, Lee AP (2007) Dielectrophoresis switching with vertical sidewall electrodes for microfluidic flow cytometry. Lab Chip 7:1114–1120

    Google Scholar 

  • Willemsen S, Hoefsloot H, Iedema P (2000) No-slip boundary condition in dissipative particle dynamics. Int J Mod Phys C 11:881–890

    Google Scholar 

  • Wu L, Lanry Yung L-Y, Lim K-M (2012) Dielectrophoretic capture voltage spectrum for measurement of dielectric properties and separation of cancer cells. Biomicrofluidics 6:014113

    Google Scholar 

  • Xiao L, Liu Y, Chen S, Fu B (2016) Numerical simulation of a single cell passing through a narrow slit. Biomech Model Mechanobiol 15:1655–1667

    Google Scholar 

  • Xiong W, Zhang J (2012) Two-dimensional lattice boltzmann study of red blood cell motion through microvascular bifurcation: cell deformability and suspending viscosity effects. Biomech Model Mechanobiol 11:575–583

    Google Scholar 

  • Xu Z, Kleinstreuer C (2018) Direct nanodrug delivery for tumor targeting subject to shear-augmented diffusion in blood flow. Med Biol Eng Comput 56(15):1–10

    Google Scholar 

  • Ye T, Phan-Thien N, Khoo BC, Lim CT (2014) Dissipative particle dynamics simulations of deformation and aggregation of healthy and diseased red blood cells in a tube flow. Phys Fluids 26:111902

    Google Scholar 

  • Ye T, Phan-Thien N, Lim CT (2016) Particle-based simulations of red blood cells—a review. J Biomech 49:2255–2266

    Google Scholar 

Download references

Acknowledgements

This publication is based upon work supported by the Khalifa University of Science and Technology under Award No. [CIRA-2019-014]

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Eiyad Abu-Nada.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (MP4 16747 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Waheed, W., Alazzam, A., Al-Khateeb, A.N. et al. Dissipative particle dynamics for modeling micro-objects in microfluidics: application to dielectrophoresis. Biomech Model Mechanobiol 19, 389–400 (2020). https://doi.org/10.1007/s10237-019-01216-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10237-019-01216-3

Keywords

Navigation