Abstract
To determine the actual state of hybridization between two Japanese medaka species (Oryzias latipes and Oryzias sakaizumii) in their natural environment, we used nuclear DNA markers at 10 loci to analyze 215 individuals from eight wild populations in the middle reaches of the Yura River basin in Japan, where the two species are sympatric. Despite large genetic differentiation between the two species, reproductive isolation between them could not be confirmed. We also discussed the formation of the current distribution patterns of the two species and their hybridization zone in the Yura River basin.
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References
Asai T, Senou H, Hosoya K (2011) Oryzias sakaizumii, a new ricefish from northern Japan (Teleostei: Adrianichthydae). Ichthyol Explor Freshw 22:289–299
Buerkle CA (2005) Maximum-likelihood estimation of a hybrid index based on molecular markers. Mol Ecol Notes 5:684–687
Dobzhansky T (1940) Speciation as a stage in evolutionary divergence. Am Nat 74:312–321
Dowling TE, Broghton RE, DeMarais BD (1997) Significant role for historical effects in the evolution of reproductive isolation: evidence from patterns of introgression between the cyprinid fishes, Luxilus cornutus and Luxilus chrysocephalus. Evolution 51:1574–1583
Fujita J, Nakayama K, Kai Y, Ueno M, Yamashita Y (2011) Geographic distributions of mitochondrial DNA lineages reflect ancient directions of river flow: a case study of the Japanese freshwater shrimp Neocaridina denticulata denticulata (Decapoda: Atyidae). Zool Sci 28:712–718
Gompert Z, Buerkle CA (2009) A powerful regression-based method for admixture mapping of isolation across the genome of hybrids. Mol Ecol 18:1207–1224
Gompert Z, Buerkle CA (2010) INTROGRESS: a software package for mapping components of isolation in hybrids. Mol Ecol Res 10:378–384
Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http://www.unil.ch/izea/softwares/fstat.html
Hewitt GM (1988) Hybrid zones-natural laboratories for evolutionary studies. Trends Ecol Evol 3:158–167
Hosoya K (2000) The circumstances and protection in Japanese ricefish, “Medaka”. J Jpn Soc Water Envir 23:135–139
Jiggins CD, Mallet J (2000) Bimodal hybrid zones and speciation. Trends Ecol Evol 15:250–255
Katoh S, Yamashita T, Danhara T (2006) Correlation of the tephra layers in the middle Pleistocene Fukuchiyama formation in the northern Kinki district, west Japan. Humans and Nature 16:35–42
Kawamura K, Ueda T, Arai R, Nagata Y, Saitoh K, Ohtaka H, Kanoh Y (2001) Genetic introgression by the rose bitterling, Rhodeus ocellatus ocellatus, into the Japanese rose bitterling, R. o. kurumeus (Teleostei: Cyprinidae). Zool Sci 18:1027–1039
Kimizuka Y, Kobayasi H (1983) Geographic distributions of karyological races of Cobitis biwae (Cobitididae). Jpn J Ichthyol 30:308–312
Kimura T, Jindo T, Narita T, Naruse K, Kobayashi D, Shin-I T, Kitagawa T, Sakaguchi T, Mitani H, Shima A, Kohara Y, Takeda H (2004) Large-scale isolation of ESTs from medaka embryos and its application to medaka developmental genetics. Mech Dev 121:915–932
Kotaki A, Furuyama K, Inoue Y (2002) The correlation between the cummingtonite-bearing ash layer in Fukuchiyama-Ayabe district, northern Kyoto prefecture and the lowermost Daisen tephra formation. Earth Science (Chikyu kagaku) 56:35–48
Kume K, Hosoya K (2010) Distribution of southern and northern populations of medaka (Oryzias latipes) in the Yura River drainage of Kyoto, Japan. Biogeography 12:111–117
McKenzie JL, Dhillon RS, Schulte PM (2015) Evidence for a bimodal distribution of hybrid indices in a hybrid zone with high admixture. R Soc Open Sci 2:150285
Ministry of Environment Japan (2015) Red Data Book 2014 - Threatened Wildlife of Japan. Gyosei Corporation, Tokyo
Ministry of Land, Infrastructure, Transport and Tourism Kinki Regional Development Bureau (2013) River improvement plan of the Yura River basin. https://www.kkr.mlit.go.jp/fukuchiyama/river/honbun.pdf Accessed 3 February 2018
Miralles L, Machado-Schiaffino G, Garcia-Vazquez E (2014) Genetic markers reveal a gradient of hybridization between cape hakes (Merluccius capensis and Merluccius paradoxus) in their sympatric geographic distribution. J Sea Res 86:69–75
Mizuno N (1977) Report of fish researches in Hikami, Hyogo Prefecture. Hikami 9:87–104
Okada A, Takahashi K (1969) Geomorphic development of the drainage basin of the River Yura, Western Honshu, Japan. J Geography 78:19–37
Nakai K, Nakao R, Fukamachi S, Koyama N, Kitagawa T (2011) Genetic analysis of Medaka (Oryzias latipes) populations in the Yamato River, Nara prefecture, Japan: detection of the b allele responsible for the himedaka phenotype. Jpn J Ichthyol 58:189–193
Nakao R, Iguchi Y, Koyama N, Nakai K, Kitagawa T (2017a) Current status of genetic disturbances in wild medaka populations (Oryzias latipes species complex) in Japan. Ichthyol Res 64:116–119
Nakao R, Iguchi Y, Zhou X, Kamide S, Kitagawa T, Kobayashi M (2017b) Extent of genetic introgression in wild populations of minami-medaka in the Nogawa River, Tokyo, Japan. Jpn J Ichthyol 64:131–138
R Core Team (2017) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria (https://www.R-project.org/)
Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223–225
Rousset F (2008) genepop’007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Res 8:103–106
Sakai H, Yamamoto C, Iwata A (1998) Genetic divergence, variation and zoogeography of a freshwater goby, Odontobutis obscura. Ichthyol Res 45:363–376
Sakaizumi M (1984) Rigid isolation between the Northern Population and the Southern Population of the medaka, Oryzias latipes. Zool Sci 1:795–800
Sakaizumi M, Shimizu Y, Hamaguchi S (1992) Electrophoretic studies of meiotic segregation in inter- and intraspecific hybrids among East Asian species of the genus Oryzias (Pisces: Oryziatidae). J Exp Zool 264:85–92
Setiamarga DHE, Miya M, Yamanoue Y, Azuma Y, Inoue JG, Ishiguro NB, Mabuchi K, Nishida M (2009) Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates. Biol Lett 5:812–816
Takehana Y, Nagai N, Matsuda M, Tsuchiya K, Sakaizumi M (2003) Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zool Sci 20:1279–1291
Takehana Y, Sakai M, Narita T, Sato T, Naruse K, Sakaizumi M (2016) Origin of boundary populations in medaka (Oryzias latipes species complex). Zool Sci 33:125–131
Acknowledgments
We thank Dr. Tomohiko Morimune and Mr. Keisuke Teramura (Kindai University) for their help with sample collections. We are also grateful to Dr. Keisuke Takata, Dr. Mayu Nakano (Shinshu University), Dr. Kazumi Hosoya, Dr. Daisuke Hayasaka, and Mr. Yu Maebara (Kindai University) for their valuable suggestions. We express our gratitude to the two anonymous referees for providing valuable comments. This research was supported by funding from the Kansai Organization for Nature Conservation. This study complies with the current laws of Japan.
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Iguchi, Y., Kume, K. & Kitagawa, T. Natural hybridization between two Japanese medaka species (Oryzias latipes and Oryzias sakaizumii) observed in the Yura River basin, Kyoto, Japan. Ichthyol Res 65, 405–411 (2018). https://doi.org/10.1007/s10228-018-0623-x
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DOI: https://doi.org/10.1007/s10228-018-0623-x