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Development of prognostic model for patients at CKD stage 3a and 3b in South Central China using computational intelligence

Abstract

Background

Chronic kidney disease (CKD) stage 3 was divided into two subgroups by eGFR (45 mL/ min 1.73 m2). There is difference in prevalence of CKD, racial differences, economic development, genetic, and environmental backgrounds between China and Western countries.

Methods

We used a computational intelligence model (CKD stage 3 Modeling, CSM) to distinguish CKD stage 3 with CKD stage 3a/3b by data distribution rules, pearson correlation coefficient (PCC), spearman correlation (SCC) analysis, logistic regression (LR), random forest (RF), support vector machine (SVM), and neural network (Nnet) to develop Prognostic Model for patients with CKD stage 3a/3b in South Central China. Furthermore, we used RF to discover risk factors of progression of CKD stage 3a and 3b to CKD stage 5. 1090 cases of CKD stage 3 patients in Xiangya Hospital were collected. Among them, 455 patients progressed to CKD stage 5 in a median follow-up of 4 years (IQR 4.295, 4.489).

Results

We found that the common risk factors for progression of CKD stage 3a/3b to CKD stage 5 included albumin, creatinine, total protein, etc. Proteinuria, direct bilirubin, hemoglobin, etc. accounted for the progression from stage CKD stage 3a to stage 5. The risk factors for CKD stage 3b progression to stage 5 included low-density lipoprotein cholesterol, diabetes, eosinophil percentage, etc.

Conclusions

CSM could be used as a point-of-care test to screen patients at high risk for disease progression, might allowing individualized therapeutic management.

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References

  1. Coresh J, Turin TC, Matsushita K, Sang Y, Ballew SH, Appel LJ, Arima H, Chadban SJ, Cirillo M, Djurdjev O, Green JA, Heine GH, Inker LA, Irie F, Ishani A, Ix JH, Kovesdy CP, Marks A, Ohkubo T, Shalev V, Shankar A, Wen CP, de Jong PE, Iseki K, Stengel B, Gansevoort RT, Levey AS. Decline in estimated glomerular filtration rate and subsequent risk of end-stage renal disease and mortality. JAMA. 2014;25:12–4.

    Google Scholar 

  2. Li L, Chang A, Rostand SG, Hebert L, Appel LJ, Astor BC, Lipkowitz MS, Wright JT, Kendrick C, Wang X, Greene TH. A within-patient analysis for time-varying risk factors of CKD progression. J Am Soc Nephrol. 2014;25(3):606–13.

    CAS  PubMed  Article  Google Scholar 

  3. Zhang L, Wang F, Wang L, Wang W, Liu B, Liu J, Chen M, He Q, Liao Y, Yu X, Chen N, Zhang JE, Hu Z, Liu F, Hong D, Ma L, Liu H, Zhou X, Chen J, Pan L, Chen W, Wang W, Li X, Wang H. Prevalence of chronic kidney disease in China: a cross-sectional survey. Lancet. 2012;379(9818):815–22.

    PubMed  Article  Google Scholar 

  4. Zhang L, Wang H. Chronic kidney disease epidemic: cost and health care implications in China. Semin Nephrol. 2009;29(5):483–6.

    PubMed  Article  Google Scholar 

  5. Levey AS, de Jong PE, Coresh J, El Nahas M, Astor BC, Matsushita K, Gansevoort RT, Kasiske BL, Eckardt KU. The definition, classification, and prognosis of chronic kidney disease: a KDIGO controversies conference report. Kidney Int. 2011;80(1):17–28.

    Article  Google Scholar 

  6. Webster AC, Nagler EV, Morton RL, Masson P. Chronic kidney disease. Lancet. 2017;389(10):1238–52.

    PubMed  Article  Google Scholar 

  7. Mills KT, Xu Y, Zhang W, Bundy JD, Chen CS, Kelly TN, Chen J, He J. A systematic analysis of worldwide population-based data on the global burden of chronic kidney disease in 2010. Kidney Int. 2015;88(5):950–7.

    PubMed  PubMed Central  Article  Google Scholar 

  8. Peng Z, Wang J, Yuan Q, Xiao X, Xu H, Xie Y, Wang W, Huang L, Zhong Y, Ao X, Zhang L, Zhao M, Tao L, Zhou Q. Clinical features and CKD-related quality of life in patients with CKD G3a and CKD G3b in China: results from the Chinese cohort study of chronic kidney disease (C-STRIDE). BMC Nephrol. 2017;18(1):311.

    PubMed  PubMed Central  Article  Google Scholar 

  9. Lin H, Long E, Ding X, Diao H, Chen Z, Liu R, Huang J, Cai J, Xu S, Zhang X, Wang D, Chen K, Yu T, Wu D, Zhao X, Liu Z, Wu X, Jiang Y, Yang X, Cui D, Liu W, Zheng Y, Luo L, Wang H, Chan CC, Morgan IG, He M, Liu Y. Prediction of myopia development among Chinese school-aged children using refraction data from electronic medical records: a retrospective, multicentre machine learning study. PLoS Med. 2018;15(11):100–2674.

    Article  Google Scholar 

  10. Sun J, McNaughton CD, Zhang P, Perer A, Gkoulalas-Divanis A, Denny JC, Kirby J, Lasko T, Saip A, Malin BA. Predicting changes in hypertension control using electronic health records from a chronic disease management program. J Am Med Inform Assoc. 2014;21(2):337–44.

    PubMed  Article  Google Scholar 

  11. Tomašev N, Glorot X, Rae JW, Zielinski M, Askham H, Saraiva A, Mottram A, Meyer C, Ravuri S, Protsyuk I, Connell A, Hughes CO, Karthikesalingam A, Cornebise J, Montgomery H, Rees G, Laing C, Baker CR, Peterson K, Reeves R, Hassabis D, King D, Suleyman M, Back T, Nielson C, Ledsam JR, Mohamed S. A clinically applicable approach to continuous prediction of future acute kidney injury [J]. Nature. 2019;572(7767):116–9.

    PubMed  PubMed Central  Article  Google Scholar 

  12. Li C, Yao Z, Zhu M, Lu B, Xu H. Biopsy-Free Prediction of Pathologic Type of Primary Nephrotic syndrome using a machine learning algorithm [J]. Kidney Blood Press Res. 2017;42(6):1045–52.

    PubMed  Article  Google Scholar 

  13. Li B, Li J, Jiang Y, Lan X. Experience and reflection from China’s Xiangya medical big data project [J]. J Biomed Inform. 2019;93:1–6.

    CAS  Google Scholar 

  14. Inker LA, Astor BC, Fox CH, Isakova T, Lash JP, Peralta CA, Tamura MK, Feldman HI. KDOQI US commentary on the 2012 KDIGO clinical practice guideline for the evaluation and management of CKD. Am J Kidney Dis. 2014;63(5):713–35.

    PubMed  Article  Google Scholar 

  15. O'Hare AM, Choi AI, Bertenthal D, Bacchetti P, Garg AX, Kaufman JS, Walter LC, Mehta KM, Steinman MA, Allon M, McClellan WM, Landefeld CS. Age affects outcomes in chronic kidney disease. J Am Soc Nephrol. 2007;18(10):2758–65.

    PubMed  Article  Google Scholar 

  16. Kirsztajn GM, Suassuna JH, Bastos MG. Dividing stage 3 of chronic kidney disease (CKD): 3A and 3B. Kidney Int. 2009;76(4):462–3.

    PubMed  Article  Google Scholar 

  17. Glassock RJ, El Nahas M, Winearls CG. Chronic kidney disease in Taiwan. Lancet. 2008;372:1949–50.

    PubMed  Article  Google Scholar 

  18. Delanaye P, Cavalier E. Staging chronic kidney disease and estimating glomerular filtration rate: an opinion paper about the new international recommendations. Clin Chem Lab Med. 2013;51(10):1911–7.

    CAS  PubMed  Article  Google Scholar 

  19. Yang W, Lu J, Weng J, Jia W, Ji L, Xiao J, Metabolic G. Prevalence of diabetes among men and women in China. N Engl J Med. 2010;362(12):1090–101.

    CAS  PubMed  Article  Google Scholar 

  20. Xu Y, Wang L, He J, Bi Y, Li M, Wang T, Wang L. Prevalence and control of diabetes in Chinese adults. JAMA. 2013;310(9):948–59.

    CAS  PubMed  Article  Google Scholar 

  21. Hsu CY, Vittinghoff E, Lin F, Shlipak MG. The incidence of end-stage renal disease is increasing faster than the prevalence of chronic renal insufficiency. Ann Intern Med. 2004;141(2):95–101.

    PubMed  Article  Google Scholar 

  22. Wen CP, Cheng TY, Tsai MK, Chang YC, Chan HT, Tsai SP, Chiang PH, Hsu CC, Sung PK, Hsu YH, Wen SF. All-cause mortality attributable to chronic kidney disease: a prospective cohort study based on 462 293 adults in Taiwan. Lancet. 2008;371(9631):2173–82.

    PubMed  Article  Google Scholar 

  23. Wang J, Wang F, Saran R, He Z, Zhao MH, Li Y, Zhang L, Bragg-Gresham J. Mortality risk of chronic kidney disease: a comparison between the adult populations in urban China and the United States. PLoS ONE. 2018;13(3):193–734.

    Google Scholar 

  24. Singh K, Betensky RA, Wright A, Curhan GC, Bates DW, Waikar SS. A concept-wide association study of clinical notes to discover new predictors of kidney failure. Clin J Am Soc Nephrol. 2016;11(12):2150–8.

    PubMed  PubMed Central  Article  Google Scholar 

  25. Vemulapalli V, Qu J, Garren JM, Rodrigues LO, Kiebish MA, Sarangarajan R, Narain NR, Akmaev VR. Non-obvious correlations to disease management unraveled by Bayesian artificial intelligence analyses of CMS data. Artif Intell Med. 2016;74:1–8.

    PubMed  Article  Google Scholar 

  26. Yu ZG. Artificial Intelligence and Medical [J]. J Med Univer. 2018;39(8):1.

    Google Scholar 

  27. Orchard P, Agakova A, Pinnock H, Burton CD, Sarran C, Agakov F, McKinstry B. Improving prediction of risk of hospital admission in chronic obstructive pulmonary disease: application of machine learning to telemonitoring data. J Med Int Res. 2018;20(9):263.

    Google Scholar 

  28. Kim JS, Kim YJ, Ryoo SM, Sohn CH, Seo DW, Ahn S, Lim KS, Kim WY. One–Year progression and risk factors for the development of chronic kidney disease in septic shock patients with acute kidney injury: a single-centre retrospective cohort study. J Clin Med. 2018;7:12.

    Article  Google Scholar 

  29. Whaley-Connell A, Sowers JR. Obesity and kidney disease: from population to basic science and the search for new therapeutic targets. Kidney Int. 2017;92:313–23.

    CAS  PubMed  Article  Google Scholar 

  30. Ritz E, Wanner C. Lipid changes and statins in chronic renal insufficiency. J Am Soc Nephrol. 2006;17(12 Suppl 3):S226–S23030.

    CAS  PubMed  Article  Google Scholar 

  31. Wen J, Chen Y, Huang Y, Lu Y, Liu X, Zhou H, Yuan H. Association of the TG/HDL-C and Non-HDL-C/HDL-C ratios with chronic kidney disease in an adult chinese population. Kidney Blood Press Res. 2017;42(6):1141–54.

    CAS  PubMed  Article  Google Scholar 

  32. Sakoh T, Nakayama M, Tanaka S, Yoshitomi R, Ura Y, Nishimoto H, Fukui A, Shikuwa Y, Tsuruya K, Kitazono T. Association of serum total bilirubin with renal outcome in Japanese patients with stages 3–5 chronic kidney disease. Metabolism. 2015;64(9):1096–102.

    CAS  PubMed  Article  Google Scholar 

  33. Wang J, Wang B, Liang M, Wang G, Li J, Zhang Y, Huo Y, Cui Y, Xu X, Qin X. Independent and combined effect of bilirubin and smoking on the progression of chronic kidney disease. Clin Epidemiol. 2018;10:121–32.

    PubMed  PubMed Central  Article  Google Scholar 

  34. Tanaka M, Fukui M, Okada H, Senmaru T, Asano M, Akabame S, Yamazaki M, Tomiyasu K, Oda Y, Hasegawa G, Toda H, Nakamura N. Low serum bilirubin concentration is a predictor of chronic kidney disease. Atherosclerosis. 2014;234(2):421–5.

    CAS  PubMed  Article  Google Scholar 

  35. Maruta Y, Hasegawa T, Yamakoshi E, Nishiwaki H, Koiwa F, Imai E, Hishida A. Association between serum Na–Cl level and renal function decline in chronic kidney disease: results from the chronic kidney disease Japan cohort (CKD-JAC) study. Clin Exp Nephrol. 2019;23(2):215–22.

    CAS  PubMed  Article  Google Scholar 

  36. Winnicki E, McCulloch CE, Mitsnefes MM, Furth SL, Warady BA, Ku E. Use of the kidney failure risk equation to determine the risk of progression to end-stage renal disease in children with chronic kidney disease. JAMA Pediatr. 2018;172(2):174–80.

    PubMed  Article  Google Scholar 

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Acknowledgment

This work was supported in part by the Hunan Provincial Natural Science Foundation of China under Grant no. 2018JJ5056 and by the QUALCOMM university-sponsored program and Xiangya Clinical Big Data Project of Central South University. We thank Yidu Cloud (Beijing) Technology Co., Ltd. for technical assistance.

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Correspondence to Song Feng or Xiangcheng Xiao.

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All procedures performed in studies involving human participants were in accordance with the ethical standards of the Ethics Committee (Xiangya Hospital, Central South University, No. 2018121290) and with the 1964 Helsinki declaration and its later amendments or comparable ethical standards.

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Informed consent was obtained from all individual participants included in the study.

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Yuan, Q., Zhang, H., Xie, Y. et al. Development of prognostic model for patients at CKD stage 3a and 3b in South Central China using computational intelligence. Clin Exp Nephrol 24, 865–875 (2020). https://doi.org/10.1007/s10157-020-01909-5

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  • DOI: https://doi.org/10.1007/s10157-020-01909-5

Keywords

  • CKD stage 3 modeling
  • Chronic kidney disease
  • Computational intelligence
  • End-stage renal disease