Leaf rust (Puccinia triticina) mediated RNAi in wheat (Triticum aestivum L.) prompting host susceptibility
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Significance of microRNAs in regulating gene expression in higher eukaryotes as well as in pathogens like fungi to suppress host defense is a well-established phenomenon. The present study focuses on leaf rust fungi Puccinia triticina (Pathotype 77-5) mediated RNAi to make wheat (Triticum aestivum L.) more susceptible. To reach such conclusions, we first confirmed the presence of argonaute (AGO) and dicer-like protein (DCL) family sequences in Puccinia. Bioinformatic tools were applied to retrieve the sequences from Puccinia genome followed by cloning and sequencing from P. triticina pathotype 77-5 cDNA to obtain the specific sequences. Their homologs were searched in other 14 Puccinia races to relate them with pathogenesis. Further, precursor sequences for three miRNA-like RNA molecules (milRs) were cloned from P. triticina cDNA. Their target genes like MAP kinase were successfully predicted and validated through degradome mapping and qRT-PCR. Gradual increase in milR2 (milR and milR*) expression over progressive time point of infection and positive expression for all the milRs within 77-5 urediniospores confirmed a complete host- independent RNAi activity by P. triticina.
KeywordsLeaf rust Puccinia triticina pathotype 77-5 Wheat Triticum aestivum L. RNAi miRNA-like RNA molecules Argonaute Dicer-like protein
This work was supported by Centre of Excellence, Technical Education Quality Improvement Program-II (grant no. NPIU/TEQIP II/FIN/31/158). The authors are thankful to BTISNet SubDIC (BT/BI/04/065/04) for providing bioinformatics facilities. S.D. acknowledges Innovation in Science Pursuit for Inspired Research (INSPIRE), Government of India, Ministry of Science and Technology, New Delhi (IF140725) for providing fellowships. The authors acknowledge Dr. Dhananjay Kumar for preparing sRNA and degradome libraries.
- Cao JY, Xu YP, Li W, Li SS, Rahman H, Cai XZ (2016) Genome-wide identification of dicer-like, Argonaute, and RNA-dependent RNA polymerase gene families in Brassica species and functional analyses of their Arabidopsis homologs in resistance to Sclerotinia sclerotiorum. Front Plant Sci 7:1614PubMedPubMedCentralGoogle Scholar
- Dean R, Van Kan JA, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD, … Foster GD (2012) The top 10 fungal pathogens in molecular plant pathology. Mol Plant Pathol. 13:414–430Google Scholar
- Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, … Salazar GA (2016) The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res. 44:D279–85Google Scholar
- Hasabnis SN, Shinde VK, Ilhe BM (2006) Virulence population of leaf rust of wheat in warmer areas of India during 2000–01. Agric Sci Dig 26:35–38Google Scholar
- Jangid A, Chandel V, Jesse MI, Srivastava A, Rishi N (2017) In-silico interaction of RNA silencing suppressors of velvet bean severe mosaic virus with DICER domains. Arch Phytopathol Plant Protect 18:1–9Google Scholar
- Kiran K, Rawal HC, Dubey H, Jaswal R, Devanna BN, Gupta DK, … Balasubramanian P (2016) Draft genome of the wheat rust pathogen (Puccinia triticina) unravels genome-wide structural variations during evolution. Genome Biol Evol. 8:2702–2721Google Scholar
- Panwar V, Jordan M, McCallum B, Bakkeren G (2017) Host-induced silencing of essential genes in Puccinia triticina through transgenic expression of RNAi sequences reduces severity of leaf rust infection in wheat. Plant Biotechnol J. https://doi.org/10.1111/pbi.12845
- Wang B, Sun Y, Song N, Zhao M, Liu R, Feng H, Wang X, Kang Z (2017) Puccinia striiformis f sp tritici microRNA-like RNA 1 (Pst-milR1), an important pathogenicity factor of Pst, impairs wheat resistance to Pst by suppressing the wheat pathogenesis-related 2 gene. New Phytol 215:338–350CrossRefPubMedGoogle Scholar