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Linkage of cold acclimation and disease resistance through plant–pathogen interaction pathway in Vitis amurensis grapevine

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Abstract

Low temperatures cause severe damage to none cold hardy grapevines. A preliminary survey with Solexa sequencing technology was used to analyze gene expression profiles of cold hardy Vitis amurensis ‘Zuoshan-1’ after cold acclimation at 4 °C for 48 h. A total of 16,750 and 18,068 putative genes were annotated for 4 °C-treated and control library, respectively. Among them, 393 genes were upregulated for at least 20-fold, while 69 genes were downregulated for at least 20-fold under the 4 °C treatment for 48 h. A subset of 101 genes from this survey was investigated further using reverse transcription polymerase chain reaction (RT-PCR). Genes associated with signaling events in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI), including generation of calcium signals (CNGC, CMLs), jasmonic acid signal (JAZ1), oxidative burst (Rboh), and phosphorylation (FLS2, BAK, MEKK1, MKKs) cascades, were upregulated after cold acclimation. Disease resistance genes (RPM1, RPS5, RIN4, PBS1) in the process of effector-triggered immunity (ETI) were also upregulated in the current condition. Defense-related genes (WRKYs, PR1, MIN7) involved in both PTI and ETI processes were abundantly expressed after cold acclimation. Our results indicated that plant–pathogen interaction pathways were linked to the cold acclimation in V. amurensis grapevine. Other biotic- and abiotic-related genes, such as defense (protein phosphatase 2C, U-box domain proteins, NCED1, stilbene synthase), transcription (DREBs, MYBs, ERFs, ZFPs), signal transduction (kinase, calcium, and auxin signaling), transport (ATP-binding cassette (ABC) transporters, auxin:hydrogen symporter), and various metabolism, were also abundantly expressed in the cold acclimation of V. Amurensis ‘Zuoshan-1’ grapevine. This study revealed a series of critical genes and pathways to delineate important biological processes affected by low temperature in ‘Zuoshan-1’.

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Acknowledgments

This work was supported by the Chinese Universities Scientific Fund (Grant No. 2012RC019) and earmarked fund for Modern Agro-industry Technology Research System (CARS-30-yz-2).

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Authors and Affiliations

  1. Viticulture and Enology Program, College of Food Science and Nutritional Engineering, China Agricultural University, Beijing, 100083, China

    Jiao Wu, Yali Zhang, Ling Yin, Junjie Qu & Jiang Lu

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  1. Jiao Wu
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  2. Yali Zhang
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  3. Ling Yin
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  4. Junjie Qu
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  5. Jiang Lu
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Correspondence to Jiang Lu.

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Additional File 1

List of DEGs selected for real-time RT-PCR. (DOCX 35 kb)

Additional File 2

Complete list of transcripts attributed to 4 °C in ‘Zuoshan-1’ grapevine. (XLSX 847 kb)

Additional File 3

List of ‘Zuoshan-1’ transcripts upregulated for at least 20-fold in 4 °C library. (XLSX 85 kb)

Additional File 4

Complete list of involved pathways for DEGs. Pathways with Q value < 0.05 are significantly enriched for DEGs. (DOC 576 kb)

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Wu, J., Zhang, Y., Yin, L. et al. Linkage of cold acclimation and disease resistance through plant–pathogen interaction pathway in Vitis amurensis grapevine. Funct Integr Genomics 14, 741–755 (2014). https://doi.org/10.1007/s10142-014-0392-1

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  • DOI: https://doi.org/10.1007/s10142-014-0392-1

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