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First Haploid Genetic Map Based on Microsatellite Markers in Senegalese Sole (Solea senegalensis, Kaup 1858)

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Abstract

The Senegalese sole (Solea senegalensis, Kaup 1858) is a flatfish species of great value for aquaculture. In this study, we develop the first linkage map in this species based on microsatellite markers characterized from genomic DNA libraries and EST databases of Senegalese sole and from other flatfish species. Three reference gynogenetic families were obtained by chromosome-manipulation techniques: two haploid gynogenetics, used to assign and order microsatellites to linkage groups and another diploid gynogenetic family, used for estimating marker–centromere distances. The consensus map consists of 129 microsatellites distributed in 27 linkage groups (LG), with an average density of 4.7 markers per LG and comprising 1,004 centimorgans (cM). Additionally, 15 markers remained unlinked. Through half-tetrad analysis, we were able to estimate the centromere distance for 81 markers belonging to 24 LG, representing an average of 3 markers per LG. Comparative mapping was performed between flatfish species LG and model fish species chromosomes (stickleback, Tetraodon, medaka, fugu and zebrafish). The usefulness of microsatellite markers and the genetic map as tools for comparative mapping and evolution studies is discussed.

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Acknowledgments

This work has been supported by the Spanish Ministry of Science and Innovation (AGL2009-11872), Pleurogene-Flatfish Genomics and the Consolider-Ingenio AQUAGENOMICS Project (CSD2007-00002).

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Authors and Affiliations

  1. Facultad de Ciencias, Departamento de Genética, Universidad de Granada, 18071, Granada, Spain

    Ma. Jesús Molina-Luzón, Rafael Navajas-Pérez, Francisca Robles, Carmelo Ruiz-Rejón & Roberto de la Herrán

  2. Facultad de Veterinaria, Departamento de Genética, Universidad de Santiago de Compostela, Campus de Lugo, 27002, Lugo, Spain

    Miguel Hermida, Carmen Bouza & Paulino Martínez

  3. IFAPA, Centro Agua del Pino, Consejería de Agricultura y Pesca, Junta de Andalucía, 21450, Cartaya, Huelva, Spain

    José Ignacio Navas

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  1. Ma. Jesús Molina-Luzón
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Correspondence to Roberto de la Herrán.

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Molina-Luzón, M.J., Hermida, M., Navajas-Pérez, R. et al. First Haploid Genetic Map Based on Microsatellite Markers in Senegalese Sole (Solea senegalensis, Kaup 1858). Mar Biotechnol 17, 8–22 (2015). https://doi.org/10.1007/s10126-014-9589-5

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