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Endosymbiotic Microflora of the Vestimentiferan Tubeworm (Lamellibrachia sp.) from a Bathyal Cold Seep

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Abstract

Gutless vestimentiferan tubeworms are known to harbor endosymbiotic bacteria in a specialized tissue, the trophosome, which consists of lobules. The endosymbionts of vestimentiferans inhabiting sulfide-rich hydrothermal vents are monospecific for their host. In contrast, previous studies suggest that vestimentiferas of methane-rich seeps may host multispecific symbionts. Phylogenetic analysis and dot-blot hybridization of 16S ribosomal RNA genes (16S rDNA) detected 4 operational taxonomic units (OTUs) in the trophosome of the vestimentifera Lamellibrachia species from a bathyal methane-seep. The OTUs were closely related to 16S rDNA of the species belonging to α-Proteobacteria (Sulfitobacter), β-Proteobacteria (Janthinobacterium), and γ-Proteobacteria (Acinetobacter and Pseudomonas). Localizations of the 4 OTUs within the trophosome were confirmed by in situ hybridization (ISH). ISH signals of the α-proteobacterial OTU were observed in the innermost zone of the trophosome lobules. In contrast, ISH signals of the β- and γ-proteobacterial OTUs were observed at the periphery of the lobules; however, whether they occur inside or outside the lobules remains unclear. These results support the possibility that the studied methane-seep tubeworm has a microflora composed of multispecific endosymbionts.

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References

  1. S.F. Altschul W. Gish W. Miller E.W. Myers D.J. Lipman (1990) ArticleTitleBasic local alignment search tool. J Mol Biol 215 403–410 Occurrence Handle10.1006/jmbi.1990.9999 Occurrence Handle1:CAS:528:DyaK3MXitVGmsA%3D%3D Occurrence Handle2231712

    Article  CAS  PubMed  Google Scholar 

  2. R.I. Amann B.J. Binder R.J. Olson S.W. Chisholm R. Devereux D.A. Stahl (1990) ArticleTitleCombination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56 1919–1925 Occurrence Handle1:CAS:528:DyaK3cXkvFCgsrs%3D Occurrence Handle2200342

    CAS  PubMed  Google Scholar 

  3. M. Bright H. Keckeis C.R. Fisher (2000) ArticleTitleAn autoradiographic examination of carbon fixation, transfer and utilization in the Riftia pachyptila symbiosis. Mar Biol 136 621–632 Occurrence Handle10.1007/s002270050722

    Article  Google Scholar 

  4. S.C. Cary W. Warren E. Anderson S.J. Giovannoni (1993) ArticleTitleIdentification and localization of bacterial endosymbionts in hydrothermal vent taxa with symbiont-specific polymerase chain reaction amplification and in situ hybridization techniques. Mol Mar Biol Biotechnol 2 51–82 Occurrence Handle1:CAS:528:DyaK3sXlslCrtbw%3D Occurrence Handle8364689

    CAS  PubMed  Google Scholar 

  5. C.M. Cavanaugh (1985) ArticleTitleSymbiosis of chemoautotrophic bacteria and marine invertebrates from hydrothermal vents and reducing sediments. Bull Biol Soc Wash 6 373–388

    Google Scholar 

  6. C.M. Cavanaugh S.L. Gardiner M.L. Jones H.W. Jannasch J.B. Waterbury (1981) ArticleTitleProkaryotic cells in the hydrothermal vent tube worm, Riftia pachyptila: possible chemoautotrophic symbionts. Science 213 340–342 Occurrence Handle1:CAS:528:DyaL3MXkslOgtr8%3D

    CAS  Google Scholar 

  7. J.B. Corliss R.D. Ballard (1977) ArticleTitleOasis of life in the cold abyss. Nat Geographic Mag 152 440–453

    Google Scholar 

  8. G. Dealtry D. Rickwood (1992) Cell Biology. Labfax Oxford: BIOS Scientific 254

    Google Scholar 

  9. E.F. DeLong (1992) ArticleTitleArchaea in coastal marine environments. Proc Natl Acad Sci U.S.A 89 5685–5689 Occurrence Handle1:CAS:528:DyaK38Xks1Kntrs%3D Occurrence Handle1608980

    CAS  PubMed  Google Scholar 

  10. D.L. Distel D.J. Lane G.J. Olsen S.J. Giovannoni B. Pace N.R. Pace D.A. Sttahl F. Felbeck (1988) ArticleTitleSulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences. J Bacteriol 170 2506–2510 Occurrence Handle1:CAS:528:DyaL1cXksFWmsLc%3D Occurrence Handle3286609

    CAS  PubMed  Google Scholar 

  11. D.L. Distel H.W. Lee C.M. Cavanaugh (1995) ArticleTitleIntracellular coexistence of methano- and thioautotrophic bacteria in a hydrothermal vent mussel. Proc Natl Acad Sci USA 92 9598–9602 Occurrence Handle1:CAS:528:DyaK2MXoslCmsr0%3D Occurrence Handle7568180

    CAS  PubMed  Google Scholar 

  12. D.B. Edwards D.C. Nelson (1991) ArticleTitleDNA-DNA solution hybridization studies of the bacterial symbionts of hydrothermal vent tube worms (Riftia pachyptila and Tevnia jerichonana). Appl Environ Microbiol 57 1082–1088

    Google Scholar 

  13. H. Elsaied H. Kimura T. Naganuma (2002) ArticleTitleMolecular characterization and endosymbiotic localization of the gene encoding D-ribulose 1,5-bisphosphate carboxylase-oxygenase (RuBisCO) form II in the deep-sea vestimentiferan trophosome. Microbiology 148 1947–1957 Occurrence Handle1:CAS:528:DC%2BD38XkvVCgtb4%3D Occurrence Handle12055314

    CAS  PubMed  Google Scholar 

  14. K. Endow S. Ohta (1990) ArticleTitleOccurrence of bacteria in the primary oocytes of vesicomid clam Calyptogena soyoae. Mar Ecol Prog Ser 64 309–311

    Google Scholar 

  15. H. Felbeck (1981) ArticleTitleChemoautotrophic potential of the hydrothermal vent tube worm, Riftia pachyptila Jones (Vestimentifera) Science 213 336–338 Occurrence Handle1:CAS:528:DyaL3MXkslOiur4%3D

    CAS  Google Scholar 

  16. R.A. Feldman M.B. Black C.S. Cary R.A. Lutz R.C. Vrijenhoek (1997) ArticleTitleMolecular phylogenetics of bacterial endosymbionts and their vestimentiferan hosts. Mol Mar Biol Biotechnol 6 268–277 Occurrence Handle1:CAS:528:DyaK2sXlvFSjsb0%3D Occurrence Handle9284565

    CAS  PubMed  Google Scholar 

  17. C.R. Fisher (1990) ArticleTitleChemoautotrophic and methanotrophic symbioses in marine invertebrates. Rev Aquat Sci 2 399–436 Occurrence Handle1:CAS:528:DyaK3MXlvFWitA%3D%3D

    CAS  Google Scholar 

  18. C.R. Fisher J.J. Childress (1984) ArticleTitleSubstrate oxidation by trophosome tissue from Riftia pachyptila Jones (Phylum pogonophora) Mar Biol Lett 5 171–183 Occurrence Handle1:CAS:528:DyaL2cXlsVygurk%3D

    CAS  Google Scholar 

  19. Y. Fujiwara C. Kato N. Masui K. Fujikura S. Kojima (2001) ArticleTitleDual symbiosis in the cold-seep thyasirid clam Maorithyas hadalis from the hadal zone in the Japan Trench, western Pacific. Mar Ecol Prog Ser 214 151–159

    Google Scholar 

  20. S.C. Hand (1987) ArticleTitleTrophosome ultrastructure and the characterization of isolated bacteriocytes from invertebrate–sulfur bacteria symbiosis. Biol Bull 173 260–276 Occurrence Handle1:CAS:528:DyaL2sXmtFCksb0%3D

    CAS  Google Scholar 

  21. H.B.J. Heiles E. Genersch C. Kessler R. Neumann H.J. Eggers (1988) ArticleTitle In situ hybridization with dioxigenin-labeled DNA of human papilloma viruses (HPV 16/18) in HeLa and SiHa cells. Biotechniques 6 978–981 Occurrence Handle1:CAS:528:DyaL1MXhtFWjsrc%3D Occurrence Handle2856200

    CAS  PubMed  Google Scholar 

  22. H.J. Hötke R. Seibl J. Burg K. Muhlegger C. Kessler (1990) ArticleTitleNonradioactive labeling and detection of nucleic acids, II: optimization of the digoxigenin system. Biol Chem Hopper Seyler 371 929–938

    Google Scholar 

  23. M.L. Jones (1981) ArticleTitle Riftia pachyptila Jones: observations on the vestimentifiran worm in the Galapagos Rift. Science 213 333–336

    Google Scholar 

  24. M.L. Jones S.L. Gardiner (1988) ArticleTitleEvidence for a transient digestive tract in Vestimentifera. Proc Biol Soc Wash 101 423–433

    Google Scholar 

  25. M.L. Jones S.L. Gardiner (1989) ArticleTitleOn the early development of the vestimentiferan tube worm Ridgeia sp. and observations on the nervous system and trophosome of Ridgeia sp. and Riftia pachyptila. Biol Bull 177 254–276

    Google Scholar 

  26. C. Kato L. Li J. Tamaoka K. Horikoshi (1997) ArticleTitleMolecular analyses of the sediment of the 11000-m deep Mariana Trench. Extremophiles 1 117–123 Occurrence Handle10.1007/s007920050024 Occurrence Handle1:CAS:528:DyaK2sXmt1Whsrk%3D Occurrence Handle9680317

    Article  CAS  PubMed  Google Scholar 

  27. B.E. Laue D.C. Nelson (1997) ArticleTitleSulfur-oxidizing symbionts have not co-evolved with their hydrothermal vent tube worm hosts: an RFLP analysis. Mol Mar Biol Biotechnol 6 180–188 Occurrence Handle1:CAS:528:DyaK2sXlvFSjsLo%3D Occurrence Handle9284558

    CAS  PubMed  Google Scholar 

  28. D.J. Lipman W.R. Person (1985) ArticleTitleRapid and sensitive protein similarity searches. Science 227 1435–1441 Occurrence Handle1:CAS:528:DyaL2MXkt1WrsLg%3D Occurrence Handle2983426

    CAS  PubMed  Google Scholar 

  29. T. Masuzawa N. Handa H. Kitagawa M. Kusakabe (1992) ArticleTitleSulfate reduction using methane in sediments beneath a bathyal “cold-seep” giant clam community off Hatsushima Island, Sagami Bay, Japan. Earth Planet Sci Lett 110 39–50 Occurrence Handle1:CAS:528:DyaK38XkvFCjsL8%3D

    CAS  Google Scholar 

  30. T. Naganuma C. Kato H. Hirayama N. Moriyarna J. Hashimoto K. Horikoshi (1997a) ArticleTitleIntracellular occurrence of ε-Proteobacterial 16S rRNA sequences in the vestimentiferan trophosome. J Oceanogr 53 193–197 Occurrence Handle1:CAS:528:DyaK2sXksFGqtr0%3D

    CAS  Google Scholar 

  31. T. Naganuma J. Naka Y. Okayama A. Minami A. Horikoshi (1997b) ArticleTitleMorphological diversity of the microbial population in vestinentiferan tubeworm. J Mar Biotechnol 5 119–123

    Google Scholar 

  32. R.D.M. Page (1996) ArticleTitleTREEVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12 357–358 Occurrence Handle1:STN:280:ByiD2MfgtlA%3D Occurrence Handle8902363

    CAS  PubMed  Google Scholar 

  33. N. Saitou M. Nei (1987) ArticleTitleThe neighbor-joining method: a new method for reconstructing phylogenetic tree. Mol Biol Evol 4 406–425 Occurrence Handle1:STN:280:BieC1cbgtVY%3D Occurrence Handle3447015

    CAS  PubMed  Google Scholar 

  34. R. Schmaljohann E. Faber M.J. Whiticar P.R. Dando (1990) ArticleTitleCo-existence of methane- and sulphur-based endosymbioses between bacteria and invertebrates at a site in the Skagerrak. Mar Ecol Prog Ser 61 119–124

    Google Scholar 

  35. D.Y. Sorokin (1995) ArticleTitle Sulfitobacter pontiacus gen. nov., sp. nov.—a new heterotrophic bacterium from the Black Sea, specialized on sulfite oxidation. Mikrobiologiya 64 295–305

    Google Scholar 

  36. E.C. Southward (1988) ArticleTitleDevelopment of the gut and segmentation of newly settled stages of Ridgea (Vestimentifera): implications for relationship between Vestimentifera and Pogonophora. J Mar Biol Assoc UK 68 465–487

    Google Scholar 

  37. D.A. Stahl D.J. Lane G.J. Olsen N.R. Pace (1984) ArticleTitleAnalysis of hydrothermal vent–associated symbionts by ribosomal RNA sequences. Science 224 409–411 Occurrence Handle1:CAS:528:DyaL2cXksFSnt7o%3D

    CAS  Google Scholar 

  38. M.T. Suzuki S.J. Giovannoni (1996) ArticleTitleBias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62 625–630 Occurrence Handle1:CAS:528:DyaK28XovVCrug%3D%3D Occurrence Handle8593063

    CAS  PubMed  Google Scholar 

  39. M.T. Suzuki M.S. Rappé S.J. Giovannoni (1998) ArticleTitleKinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl Environ Microbiol 64 4522–4529

    Google Scholar 

  40. J.D. Thompson D.G. Higgins T.J. Gibson (1994) ArticleTitleCLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22 4673–4680 Occurrence Handle7984417

    PubMed  Google Scholar 

  41. G Wallner R. Amann W. Beisker (1993) ArticleTitleOptimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14 136–143 Occurrence Handle1:CAS:528:DyaK3sXisVylsrs%3D Occurrence Handle7679962

    CAS  PubMed  Google Scholar 

  42. C.R. Woese (1987) ArticleTitleBacterial evolution. Microbiol Rev 51 221–271 Occurrence Handle2439888

    PubMed  Google Scholar 

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Acknowledgements

Mr. Masahiro Yoshida, the observer of the submersible Shinkai 2000’s dive no. 722, kindly offered the vestimentiferan and sediment samples. We are obliged to Ms. Terumi Akeno, National Research Institute of Brewery, for her help in DNA sequencing. Our thanks also go to Prof. Y. Yoshimura, Hiroshima University, for his help in the preparation of histologic sections for ISH. This work was partly supported by the Special Coordination Fund “Archaean Park,” Ministry of Education, Culture, Sports, Science and Technology, Japan; the Grant-in-Aid for Scientific Research (14340268) from the Japan Society for the Promotion of Science; and the Electric Technology Research Foundation of Chugoku, Japan.

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Correspondence to Takeshi Naganuma.

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Kimura, H., Higashide, Y. & Naganuma, T. Endosymbiotic Microflora of the Vestimentiferan Tubeworm (Lamellibrachia sp.) from a Bathyal Cold Seep . Mar. Biotechnol. 5, 593–603 (2003). https://doi.org/10.1007/s10126-002-0117-7

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