Reagents
5-Fluorouracil (5-FU) and cisplatin (CDDP) were provided by Nippon Kayaku (Tokyo, Japan). The following antibodies were used for immunoblot analysis; anti-Mcl-1 (Santa Cruz Biotechnology, Santa Cruz, CA), anti-β-actin (Sigma, St. Louis, MO), and anti-cytochrome c (BD Pharmingen, San Diego, CA, USA).
Cells and cell culture
The human gastric cancer cell lines MKN45, MKN1, MKN74, AZ521, NUGC2, FU97, and IM95 were obtained from the Health Science Research Resources Bank (Osaka, Japan). MKN45, MKN1, and MKN74 were grown in RPMI1640 medium supplemented with 10 % fetal bovine serum (FBS). NUGC cells were grown in RPMI1640 medium supplemented with 15 % FBS. AZ521, FU97, and IM95 cells were grown in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10 % FBS. All media contained 100,000 units/l penicillin and 100 mg/l streptomycin (GIBCO, Life Technologies, Carlsbad, UK).
Adenovirus-mediated short hairpin (sh) RNA introduction
We used adenovirus vectors containing Ad5/35 chimeric fiber protein [18] and the vector plasmid pAdHM34 and the shuttle vector plasmid pHMCMV-GFP1, which have been described previously [19]. pHMCMV-GFP1 contains the cytomegalovirus (CMV) promoter, the GFP gene derived from pEGFP-N1 (Clontech, Palo Alto, CA, USA), and the bovine growth hormone (BGH) poly(A) signal. An siRNA expression unit containing human U6 promoter and two BspMI cloning sites was excised from the HIV-U6i-GFP plasmid by EcoRI digestion, then subcloned into the EcoRI site in pHMCMV-GFP1, which was located downstream of the BGH poly(A) signal. This vector was designated pHMCMV-GFP-U6i. The double-stranded (ds) oligonucleotides for the shRNA can be directly subcloned into the two BspMI sites of the pHMCMV-GFP-U6i [20]. Shuttle vector plasmids containing ds-oligonucleotides for Mcl-1; 5′-ACG GGA CTG GCT AGT TAA ACT TCA AGA GAG TTT AAC TAG CCA GTC CCG T-3′ [8], or GL3B (firefly luciferase, control) were constructed. The adenovirus vectors, AdHM34-Mcl-1 p906 and AdHM34-GL3B (control), were constructed by an improved in vitro ligation method as described previously [21]. Both adenovirus vectors were propagated in 293 cells and the viral titers were determined using Adeno-X Rapid Titer Kit (Clontech) according to the manufacturer’s instructions.
Immunoblot analysis
Cells were lysed by incubation on ice for 30 min in lysis buffer containing 20 mM Tris–HCl (pH 7.5), 1 % Triton X-100, 150 mM NaCl, 10 % glycerol, 1 mM Na3VO4, 50 mM NaF, 100 mM phenylmethylsulfonyl fluoride, 1 mM phenylmethylsulfonyl fluoride (PMSF), and a protease inhibitor mixture (Complete Protease Inhibitor Cocktail; Roche Diagnostics Japan, Tokyo, Japan). After centrifugation at 14,000g [8] for 15 min at 4 °C, the supernatants were collected. Samples were resolved by 12.5 % sodium dodecylsulfate polyacrylamide gel electrophoresis (SDS-PAGE), transferred to a nitrocellulose membrane, and blotted with primary antibodies. Horseradish peroxidase-conjugated secondary antibodies (Biosource International, CA) were used at appropriate concentrations. Bound antibodies were visualized using a chemiluminescent substrate (ECL; GE Health Care Sciences, Amersham Place, UK) and exposed to Kodak X-Omat film (Kodak, Rochester, NY).
Quantitative real-time reverse transcription polymerase chain reaction (PCR)
Total RNA was isolated using TRIzol reagent (Invitrogen, Life Technologies, Carlsbad, UK) according to the manufacturer’s instructions. The RNA samples were treated with deoxyribonuclease I (Invitrogen) and a reverse transcription PCR (RT-PCR) reaction was performed using Super Script First Strand Synthesis System for RT-PCR (Invitrogen). After agarose gel electrophoresis, the expected base pair PCR products were identified, and the PCR products were eluted using a QIAquick Gel Extraction kit (Qiagen, Qiagen Japan, Tokyo, Japan). The PCR products were prepared as standards for quantitative PCR at the concentrations of 109, 108, 107, 106, 105, and 104 copies/μl. Real-time PCR was performed using an ABI PRISM 7500 fast and SYBR green system (Applied Biosystems, Foster City, CA). PCR primer for 18s RNA was used as an internal control. The PCR primers for Mcl-1 were: forward, 5′-ATG CTT CGG AAA CTG GAC AT-3′; reverse, 5′-TCC TGA TGC CAC CTT CTT CTA GG-3′.
Cell viability assay
Cell viability was evaluated using the CellTiter 96 Aqueous One Solution cell proliferation assay (Promega, Madison, WI). Five thousand cells/well were seeded in 96-well plates and treated with or without either 5-FU or CDDP for 48 h. MTS [3,4-(5-dimethylthiazol-2-yl)-5-(3-carboxy-methoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium salt] was added and the MTS assay was performed according to the manufacturer’s instructions (Promega, Madison, WI).
Quantitation of apoptosis by 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI) nuclear staining
Apoptosis was quantitated by assessing the characteristic nuclear changes of apoptosis (i.e., chromatin condensation and nuclear fragmentation), using the nuclear binding dye DAPI and fluorescence microscopy [22].
Caspase activity assay
Caspase-3 activity was evaluated by using a caspase colorimetric assay kit (Clontech) according to manufacturer’s instructions. In brief, 2 × 106 cells were lysed in 50 μl of lysis buffer. The lysate was mixed with 50 μl of the reaction mix containing 50 μM (final concentration) of acetyl-Asp-Glu-Val-Asp p-nitroanilide (Ac-DEVD-pNA) as a substrate for caspase 3. After 1-h incubation at 37 °C, the increase in absorbance of enzymatically released pNA at 405 nm was measured in a microplate reader.
Mitochondrial cytochrome-c release
Cytosolic extracts for the immunoblot assay of cytochrome c were obtained as described by Leist et al. [23]. Briefly, at the desired time points, the culture medium was exchanged for permeabilization buffer (210 mM d-mannitol, 70 mM sucrose, 10 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), 5 mM succinate, 0.2 mM ethylene glycol tetraacetic acid (EGTA), 0.15 % bovine serum albumin, 80 μg/ml digitonin, pH 7.2). The permeabilization buffer was removed by the centrifuge for 10 min at 13,000g. Supernatants representing the cytosolic extract were employed for the immunoblot analysis.
Flow cytometry
To identify and isolate the CD44-positive fraction and CD44-negative fraction, cells were removed from the culture dish with trypsin and ethylenediamine tetraacetic acid (EDTA), washed, and incubated with allophycocyanin (APC)-labeled anti-human CD44 (mouse IgG2b; BD Pharmingen) for 1 h at 37 °C. After washing, the cells were analyzed by using a FACS Vantage SE fluorescence activated cell sorter (Becton–Dickinson, Franklin Lakes, NJ). To identify and isolate the side population (SP) cell fraction and the main population (MP) cell fraction, cells were removed from the culture dish with trypsin and EDTA, washed, and suspended at 1 × 106/ml in 2 % FBS + HANKS Balanced Salt Solution (GIBCO). Then the cells were labeled with Hoechst 33342 dye (Dojinkagaku, Tokyo, Japan). The labeled cells were incubated for 60 min at 37 °C. After being washed once with the HANKS solution, the cells were counterstained with 1 μg/ml propidium iodide, to label dead cells. The cells were analyzed by using a FACS Vantage SE fluorescence activated cell sorter (Becton–Dickinson). After collecting 105 events, SP cells, which showed no Hoechst 33342 dye fluorescence, and MP cells, which included high Hoechst 33342 fluorescence, were defined as described previously [24].
Statistical analysis
Data are presented as means ± SD. To assess the statistical significance of differences, the t-test was performed. P values of <0.01 were considered significant.