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Using a multiplex polymerase chain reaction for the identification of Beijing strains of Mycobacterium tuberculosis

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Abstract

The genotype of a Beijing strain of Mycobacterium tuberculosis (MTB) is usually determined by spoligotyping. However, this technique requires special equipment and is time-consuming. In this study, we developed a new multiplex polymerase chain reaction (PCR) to differentiate between Beijing and non-Beijing strains of MTB. A total of 323 MTB isolates were genotyped by both spoligotyping and the novel multiplex PCR. By spoligotyping, 169 (52.3%) isolates were determined to be Beijing strains and the remaining 154 (47.7%) isolates were non-Beijing strains. The multiplex PCR method produced results identical to those of spoligotyping in the identification of Beijing strains of MTB. This method is highly sensitive, specific, and fast. It is also cost-effective and suitable for screening large numbers of samples.

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References

  1. van Soolingen D, Qian L, de Haas PE, Douglas JT, Traore H, Portaels F et al (1995) Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia. J Clin Microbiol 33(12):3234–3238

    PubMed  Google Scholar 

  2. Glynn JR (2006) Beijing/W genotype Mycobacterium tuberculosis and drug resistance. Emerg Infect Dis 12(5):736–743

    CAS  Google Scholar 

  3. van Embden JD, Cave MD, Crawford JT, Dale JW, Eisenach KD, Gicquel B et al (1993) Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J Clin Microbiol 31(2):406–409

    PubMed  Google Scholar 

  4. Hillemann D, Warren R, Kubica T, Rüsch-Gerdes S, Niemann S (2006) Rapid detection of Mycobacterium tuberculosis Beijing genotype strains by real-time PCR. J Clin Microbiol 44(2):302–306 doi:10.1128/JCM.44.2.302-306.2006

    Article  PubMed  CAS  Google Scholar 

  5. van Soolingen D, Hermans PW, de Haas PE, Soll DR, van Embden JD (1991) Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J Clin Microbiol 29(11):2578–2586

    PubMed  Google Scholar 

  6. Warren RM, Victor TC, Streicher EM, Richardson M, Beyers N, Gey van Pittius NC et al (2004) Patients with active tuberculosis often have different strains in the same sputum specimen. Am J Respir Crit Care Med 169(5):610–614 doi:10.1164/rccm.200305-714OC

    Article  PubMed  Google Scholar 

  7. Plikaytis BB, Marden JL, Crawford JT, Woodley CL, Butler WR, Shinnick TM (1994) Multiplex PCR assay specific for the multidrug-resistant strain W of Mycobacterium tuberculosis. J Clin Microbiol 32(6):1542–1546

    PubMed  CAS  Google Scholar 

  8. Rao KR, Ahmed N, Srinivas S, Sechi LA, Hasnain SE (2006) Rapid identification of Mycobacterium tuberculosis Beijing genotypes on the basis of the mycobacterial interspersed repetitive unit locus 26 signature. J Clin Microbiol 44(1):274–277 doi:10.1128/JCM.44.1.274-277.2006

    Article  PubMed  CAS  Google Scholar 

  9. Chin PJ, Chiu CC, Jou R (2007) Identification of Beijing lineage Mycobacterium tuberculosis with combined mycobacterial interspersed repetitive unit loci 26, 31, and ETR-A. J Clin Microbiol 45(3):1022–1023 doi:10.1128/JCM.02036-06

    Article  PubMed  CAS  Google Scholar 

  10. Chen J, Tsolaki AG, Shen X, Jiang X, Mei J, Gao Q (2007) Deletion-targeted multiplex PCR (DTM-PCR) for identification of Beijing/W genotypes of Mycobacterium tuberculosis. Tuberculosis (Edinb) 87(5):446–449 doi:10.1016/j.tube.2007.05.014

    Article  CAS  Google Scholar 

  11. Koksalan OK (2006) Use of mycobacterial interspersed repetitive unit locus 26 for rapid identification of Beijing genotype Mycobacterium tuberculosis strains. J Clin Microbiol 44(4):1612; author reply 1612–1613 doi:10.1128/JCM.44.4.1612-1613.2006

    Article  PubMed  CAS  Google Scholar 

  12. Mokrousov I, Jiao WW, Valcheva V, Vyazovaya A, Otten T, Ly HM et al (2006) Rapid detection of the Mycobacterium tuberculosis Beijing genotype and its ancient and modern sublineages by IS6110-based inverse PCR. J Clin Microbiol 44(8):2851–2856 doi:10.1128/JCM.00705-06

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

This study was supported by grants DOH95-DC-1601 from the Department of Health and TSGH-C95-40 from the Tri-Service General Hospital, Taiwan. We thank Dr. Chao-Hung Lee for the assistance with the manuscript.

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Correspondence to J.-J. Lu.

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Sun, JR., Lee, SY., Dou, HY. et al. Using a multiplex polymerase chain reaction for the identification of Beijing strains of Mycobacterium tuberculosis . Eur J Clin Microbiol Infect Dis 28, 105–107 (2009). https://doi.org/10.1007/s10096-008-0590-7

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  • DOI: https://doi.org/10.1007/s10096-008-0590-7

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