Skip to main content
Log in

Molecular characterization of a novel bacterial aryl acylamidase belonging to the amidase signature enzyme family

  • Published:
Molecules and Cells

Abstract

In seeking aryl acylamidase (EC 3.5.1.13) acting on an amide bond in p-acetaminophenol (Tylenol™), we identified a novel gene encoding 496 residues of a protein. The gene revealed a conserved amidase signature region with a canonical catalytic triad. The gene was expressed in E. coli and characterized for its biochemical properties. The optimum pH and temperature for the activity on p-acetaminophenol were 10 and 37°C, respectively. The half-life of enzyme activity at 37°C was 192 h and 90% of its activity remained after 3 h incubation at 40°C. Divalent metals was found to inhibit the activity of enzyme. The K m values for various aryl acylamides such as 4-nitroacetanilide, p-acetaminophenol, phenacetin, 4-chloroacetanilide and acetanilide were 0.10, 0.32, 0.83, 1.9 and 19 mM, respectively. The reverse reaction activity (amide synthesis) was also examined using various chain lengths (C1∼C4 and C10) of carboxylic donors and aniline as substrates. These kinetic parameters and substrate specificity in forward and reverse reaction indicated that the aryl acylamidase in this study has a preference for aryl substrate having polar functional groups and hydrophobic carboxylic donors.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Alt, J., Heymann, E., and Krisch, K. (1975). Characterization of an Inducible Amidase from Pseudomonas acidovorans AE 1. Eur. J. Biochem. 53, 357–369.

    Article  CAS  PubMed  Google Scholar 

  • Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403–410.

    CAS  PubMed  Google Scholar 

  • Balasubramanian, A.S., and Bhanumathy, C.D. (1993). Noncholiner-gic functions of cholinesterases. FASEB J. 7, 1354–1358.

    CAS  PubMed  Google Scholar 

  • Boopathy, R., and Layer, P.G. (2004). Aryl acylamidase activity on acetylcholinesterase is high during early chicken brain development. Protein J. 23, 325–333.

    Article  CAS  PubMed  Google Scholar 

  • Chebrou, H., Bigey, F., Arnaud, A., and Galzy, P. (1996). Study of the amidase signature group. Biochim. Biophys. Acta 1298, 285–293.

    CAS  PubMed  Google Scholar 

  • Engelhardt, G., Wallnofer, P.R., and Plapp, R. (1973). Purification and properties of an aryl acylamidase of Bacillus sphaericus, catalyzing the hydrolysis of various phenylamide herbicides and fungicides. Appl. Microbiol. 26, 709–718.

    CAS  PubMed  Google Scholar 

  • Finn, R.D., Tate, J., Mistry, J., Coggill, P.C., Sammut, S.J., Hotz, H.R., Ceric, G., Forslund, K., Eddy, S.R., Sonnhammer, E.L., et al. (2008). The Pfam protein families database. Nucleic Acids Res. 36, D281–288.

    Article  CAS  PubMed  Google Scholar 

  • Fujimoto, D. (1974). Serotonin-sensitive aryl acylamidase in rat brain. Biochem. Biophys. Res. Commun. 61, 72–74.

    Article  CAS  PubMed  Google Scholar 

  • Fukuda, K., Matsumoto, T., Hagiwara, K., Fujimoto, Z., and Mizuno, H. (1997). Crystallization and preliminary X-ray diffraction studies of tulip aryl acylamidase: a key enzyme in plant herbicide detoxification. Acta Crystallogr. D Biol. Crystallogr. 53, 342–344.

    Article  CAS  PubMed  Google Scholar 

  • Gaynor, J.J., and Still, C.C. (1983). Subcellular localization of rice leaf aryl acylamidase activity. Plant Physiol. 72, 80–85.

    Article  CAS  PubMed  Google Scholar 

  • George, S.T., Varghese, M., John, L., and Balasubramanian, A.S. (1985). Aryl acylamidase activity in human erythrocyte, plasma and blood in pesticide (organophosphates and carbamates) poisoning. Clin. Chim. Acta 145, 1–7.

    Article  CAS  PubMed  Google Scholar 

  • Hammond, P.M., Scawen, M.D. and Price, C.P. (1981). Enzyme based paracetamol estimation. Lancet 1, 391–392.

    Article  CAS  PubMed  Google Scholar 

  • Hammond, P.M., Price, C.P., and Scawen, M.D. (1983). Purification and properties of aryl acylamidase from Pseudomonas fluorescens ATCC 39004. Eur. J. Biochem. 132, 651–655.

    Article  CAS  PubMed  Google Scholar 

  • Heumann, S., Eberl, A., Fischer-Colbrie, G., Pobeheim, H., Kaufmann, F., Ribitsch, D., Cavaco-Paulo, A., and Guebitz, G.M. (2009). A novel aryl acylamidase from Nocardia farcinica hydrolyses polyamide. Biotechnol. Bioeng. 102, 1003–1011.

    Article  CAS  PubMed  Google Scholar 

  • Hiramatsu, A., Yasumoto, S., Kodama, O., and Akatsuka, T. (1982). Affinity Chromatography of Swep Hydrolase from Paecilomyces varioti on a Column of Sepharoylaminocaproyl-3-chloroanilide. Agric. Biol. Chem. 46, 6.

    Google Scholar 

  • Hoagland, R.E., and Zablotowicz, R.M. (1995) Rhizobacteria with exceptionally high aryl acylamidase activity. Pestic Biochem. Physiol. 52, 190–200.

    Article  CAS  Google Scholar 

  • Hwang, I.G. (1995). Properties of aryl acylamidase from pseudomonas sp. and production of acetaminophen by resting cells as a biocatalyst. Ph.D. dissertation. Korea University, Seoul.

    Google Scholar 

  • Kim, S.-H., Shin, D.-H., Kim, R., Adams, P., and Chandonia, J.-M. (2008). Structural genomics of minimal organisms: pipeline and results. Methods Mol. Biol. 426, 475–496.

    Article  PubMed  Google Scholar 

  • Kizaki, N., Ito, N., Yasohara, Y., and Nagasawa, T. (2006). Arylacyla-midase gene and method of using the same. EP Application, 1811022.

  • Kwak, J.H., Shin, K., Woo, J.S., Kim, M.K., Kim, S.I., Eom, S.H., and Hong, K.W. (2002). Expression, purification, and crystallization of glutamyl-tRNA(Gln) specific amidotransferase from Bacillus st-earothermophilus. Mol. Cells 14, 374–381.

    CAS  PubMed  Google Scholar 

  • Lineweaver, H., and Burk, D. (1934). The determination of enzyme dissociation constants. J. Am. Chem. Soc. 56, 658–666.

    Article  CAS  Google Scholar 

  • Masson, P., Froment, M.T., Darvesh, S., Schopfer, L.M., and Lockridge, O. (2007). Aryl acylamidase activity of human serum albumin with o-nitrotrifluoroacetanilide as the substrate. J. Enzyme. Inhib. Med. Chem. 22, 463–469.

    Article  CAS  PubMed  Google Scholar 

  • Masson, P., Froment, M.T., Gillon, E., Nachon, F., Lockridge, O., and Schopfer, L.M. (2008). Kinetic analysis of effector modulation of butyrylcholinesterase-catalysed hydrolysis of acetanilides and homologous esters. FEBS J. 275, 2617–2631.

    Article  CAS  PubMed  Google Scholar 

  • McKinney, M.K., and Cravatt, B.F. (2005). Structure and function of fatty acid amide hydrolase. Annu. Rev. Biochem. 74, 411–432.

    Article  CAS  PubMed  Google Scholar 

  • Montenegro, M.F., Moral-Naranjo, M.T., Paez de la Cadena, M., Campoy, F.J., Munoz-Delgado, E., and Vidal, C.J. (2008). The level of aryl acylamidase activity displayed by human butyrylcholinesterase depends on its molecular distribution. Chem. Biol. Interact. 175, 336–339.

    Article  CAS  PubMed  Google Scholar 

  • Morris, H.C., Overton, P.D., Ramsay, J.R., Campbell, R.S., Hammond, P.M., Atkinson, T., and Price, C.P. (1990). Develop ment and validation of an automated enzyme assay for paracetamol (acetaminophen). Clin. Chim. Acta 187, 95–104.

    Article  CAS  PubMed  Google Scholar 

  • Neumann, S., and Kula, M.R. (2002). Gene cloning, overexpression and biochemical characterization of the peptide amidase from Stenotrophomonas maltophilia. Appl. Microbiol. Biotechnol. 58, 772–780.

    Article  CAS  PubMed  Google Scholar 

  • Retief, J.D. (2000). Phylogenetic analysis using PHYLIP. Methods Mol. Biol. 132, 243–258.

    CAS  PubMed  Google Scholar 

  • Shin, S., Lee, T.H., Ha, N.C., Koo, H.M., Kim, S.Y., Lee, H.S., Kim, Y.S., and Oh, B.H. (2002). Structure of malonamidase E2 reveals a novel Ser-cisSer-Lys catalytic triad in a new serine hydrolase fold that is prevalent in nature. EMBO J. 21, 2509–2516.

    Article  CAS  PubMed  Google Scholar 

  • Studier, F.W. (2005). Protein production by auto-induction in highdensity shaking cultures. Protein Expr. Purif. 41, 207–234.

    Article  CAS  PubMed  Google Scholar 

  • Toogood, H.S., Brown, R.C., Line, K., Keene, P.A., Taylor, S.J.C., McCague, R., and Littlechild, J.A. (2004). The use of a thermostable signature amidase in the resolution of the bicyclic synthon (rac)-gamma-lactam. Tetrahedron 60, 711–716.

    Article  CAS  Google Scholar 

  • Valina, A.L., Mazumder-Shivakumar, D., and Bruice, T.C. (2004). Probing the Ser-Ser-Lys catalytic triad mechanism of peptide amidase: computational studies of the ground state, transition state, and intermediate. Biochemistry 43, 15657–15672.

    Article  CAS  PubMed  Google Scholar 

  • Vaughan, P.A., Hall, G.F., and Best, D.J. (1990). Aryl acylamidase from Rhodococcus erythropolis NCIB 12273. Appl. Microbiol. Biotechnol. 34, 42–46.

    Article  CAS  PubMed  Google Scholar 

  • Villarreal, D.T., Turco, R.F., and Konopka, A. (1994). A structureactivity study with aryl acylamidases. Appl. Environ. Microbiol. 60, 3939–3944.

    CAS  PubMed  Google Scholar 

  • Yasuhira, K., Tanaka, Y., Shibata, H., Kawashima, Y., Ohara, A., Kato, D.-i., Takeo, M., and Negoro, S. (2007). 6-Aminohexanoate oligomer hydrolases from the alkalophilic bacteria Agromyces sp. strain KY5R and Kocuria sp. Strain KY2. Appl. Environ. Microbiol. 73, 7099–7102.

    Article  CAS  PubMed  Google Scholar 

  • Yoshioka, H., Nagasawa, T., and Yamada, H. (1991). Purification and characterization of aryl acylamidase from Nocardia globerula. Eur. J. Biochem. 199, 17–24.

    Article  CAS  PubMed  Google Scholar 

  • Zablotowicz, R.M., Locke, M.A., Hoagland, R.E., Knight, S.S., and Cash, B. (2001). Fluorescent Pseudomonas isolates from Mississippi Delta oxbow lakes: in vitro herbicide biotransformations. Environ. Toxicol. 16, 9–19.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to In-Geol Choi.

About this article

Cite this article

Ko, HJ., Lee, E.W., Bang, WG. et al. Molecular characterization of a novel bacterial aryl acylamidase belonging to the amidase signature enzyme family. Mol Cells 29, 485–492 (2010). https://doi.org/10.1007/s10059-010-0060-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10059-010-0060-9

Keywords

Navigation